TCONS_00067804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067804
Unique NameTCONS_00067804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067804 ID=TCONS_00067804|Name=TCONS_00067804|organism=Clytia hemisphaerica|type=transcript|length=2941bp
GTTTATAATCTTCTCCtcttcttttttgtcttttcttttaGTTGTGCTGA
ATTCTAGCTTCGAATCTCTCGCACTAACTAAAAGCTCTCTCATTTCACTC
TAAAGTTAAGACTGGGGTCAGTTAAAAATCGAGCTAGCCTATGTCCTGCT
GTGTCTCATAAAAAGGTTGAAACTTTTGGCAGTTAGAGAGACAGTGCTGT
GTCTCAAAATGGTAGCCAGAGCCTGTAGATAATGATTAATTTCAATATCA
ATCTTTGTTCATAGGAAATATGGATTACACAGAAGATCACATCAAAATCT
TTTCTTCACGTGAATTGTCAACTGGTGaaatgaagtatgatttcaaAAAC
CTTCTCATCCAACCTGAATACCATTTACTTGATTTCGAAGAGAAATTCAA
TGGAAGTTTGAATGAATTTTGGGGACAGTGTGACGATGAGAAAATCAACG
AAGGTGAGCGTGAACACACTGAATCATTTTACGGTGGCATGTATTGGGAT
CCCTATAGATGTGATATGAGAGAACGAAAGCATTATCAAACTTACCGAGA
AAAATACACCAAACGGGtgagaaaatattcaaagtATCTATTGTTTGCTT
TCCCAAAATCTCAAAAAGCTCACATCCTTTCGAAATGTGGAATCAAAGAA
TCATTTAAGTTCCTCGTTGAAGAGTATGAAGCTGGCTCCTCAATGTTCAA
AGAATATTCCAACACCTTTCTAGAGGAAGTTCCCATTGAGGAATTTTTCG
AAAGTTGTGAAACGTTGGAGGAGGTAATTGATGAAAGATTGAATGTTACC
ATGGTTATGCAGTTTCTTTTGAAAGTCGGCGACGTTGAGTTAACAAAATC
TTTTATCGATAAGGTTATGGGAGCTGAAAAATATTCAGGTAAATATTACG
GcatcgaagaagaagaaatgataaaacctttaattaatTTGTTGAAGGCT
TTTCCATGGCAACCCCTTAGTGAGTCGGTTGAGACAGTTATTAGTCATTG
TCCAAAAGAACAGTATGAATTTTGGCTAGATGTGTTTTCATCTACCGGTA
TCACTGAGATTGCACATAAAGTTCTTGCGATCAGTTTGCAGAAAATGATG
GATGATAAAAGATTCCTTCCGTTATGgttgaaaatattcaagcttgtttt
tgaaaacgaagAATTTGGTAATCGTTGGTGGGATAAGATCATCTCCTGTG
AAGATCTTGTCAACAAAGAATTCGATATCATTTCTCATATTTGTTTGAAT
CTACCCATTGAAACAAACCCAGTAAAGTTTCCTTCTCTTTTAACCGCTTT
GGTGACTTCAATGACAACCGAGGACAACCCATATTGTGTTAAGAGGTATG
CGGAAAAGTTACTTGATGTTATCGCCAAAATCAAAGGGAGTGAATTTTTC
GAAAGTGCTCTCACTAATTTAAGTAATCAGCTTGTTTCTGAAGGTCGTAT
CTCAACCTTGATAAAACTAGCAGAACTCTGTGCACCGAAAGATCAACATT
CTCGCCACAATGAAGAAGTTGTTAAACTATTTCTGGAAGGGTGTTTTGAT
TGGTTATCAAAAGCAACTTTCGAAAGGAAACATATACAAAGTGTTGTCGA
TATAGTTGTCCTTTTGAACCAGCACAAACAATTGTATAATGGTCCTATGA
TTGAGAAATACATAGAGTCGTGTCAGAAAATATCCGATCCTGATTTTATT
TGTAATGTTGTCAACAAGTTATTTACCATGTCATGTTCGTTTTACTTTCT
CAAGCCGTTACTTCAATCACTTGCCAATTTGTTAAGCACCAAAACATTCA
CCGATCACAAAGCAATGTCTTCAACTATCAACCACATGTTCATCCAAGGA
CCTGAGTTTGATCATCTATTGACTCTTCTGTTGACTAACGAAAAAATTCT
CTCTTCCATTGATCTTCTCAATGAAATTCTACATTCACTTCTCAGCAAGG
ACGACAACATCGAACAATTGAAAACCAGTATCAATTTCCATGGATTGTTG
ACCAGCTTCGTCTCTCTAATGCAACAACCGAATAACACAAACAAAGAATT
TTCATCTCTCCGTCTGGTTCATGAATTTCTACTCAGCTTAAGCGACGAAT
CTCCTTTACATCAACTGGTTCCTCAAATAATTGACACAAGTTTGCTGAAA
AACGATTTCCCTAAGTGTATACAATATCTATCCAAACTTTCCATCCGTGA
AACTGAGACATTCAAAACCTTCCTCACAACGACAATTCATGCTTTGGGAA
TCTTCCTCCGCCGATATAATACAATCATCGATGCTGAATACCAACTTATT
TATGACTTCATAAAACTATTGCTTAAGAACGACCACTTCACGCCCTTTGC
TTTACAGCTTGCTTCGTTGAAAGACCTTACCAACAACGATTATAGAAACT
TATATCATAACAATAAAGAAAGGTCCGTTCTGGAAAATCTTCTGGCTGCT
TTCAAAAATCACCGCAACACCGATTTCTTTGCCGCCCTCCAGCTCTCTCG
CTCAAGGAGTTTGCAAATCTTGAAAGATTATGGTCCCCCTAAATTCACCT
GGGAGCAACCTGATGCGAATATCGATCACGCCAAAGTTCAGGAGTTTCTC
CGAAGTAAACGCGAAACAATCATATTGCGAACTTTCCGATCCTATAAAAG
CGCTAATAACCGGATCAAAAAGCATAGTGGATATAACAAAGACGGGAAAT
ACAGTTTTACCGCCCAAATTCGTACCGCCAAAAACGGGTGGAAGAGTTTA
GTGGATGTTAAGAAAGGGCGTCACATTCACGAAGATAGAGAGGAAAGATT
TCAGAATCTTATAAATGAATTGGAAGAAAttcttgaaagtttgaaaatat
caaACGTTGAAAATCCATTAGCTGCGTAATTTGAATCAATTTCTTTAGGG
TTATCTTCATATTCATTTAATCTTTATACTAATAAAACTAG
Run BLAST on NCBI

transcript from alignment at scaffold_476:188242..191182+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067804 ID=TCONS_00067804|Name=TCONS_00067804|organism=Clytia hemisphaerica|type=transcript|length=2941bp|location=Sequence derived from alignment at scaffold_476:188242..191182+ (Clytia hemisphaerica)
GTTTATAATCTTCTCCtcttcttttttgtcttttcttttaGTTGTGCTGA
ATTCTAGCTTCGAATCTCTCGCACTAACTAAAAGCTCTCTCATTTCACTC
TAAAGTTAAGACTGGGGTCAGTTAAAAATCGAGCTAGCCTATGTCCTGCT
GTGTCTCATAAAAAGGTTGAAACTTTTGGCAGTTAGAGAGACAGTGCTGT
GTCTCAAAATGGTAGCCAGAGCCTGTAGATAATGATTAATTTCAATATCA
ATCTTTGTTCATAGGAAATATGGATTACACAGAAGATCACATCAAAATCT
TTTCTTCACGTGAATTGTCAACTGGTGaaatgaagtatgatttcaaAAAC
CTTCTCATCCAACCTGAATACCATTTACTTGATTTCGAAGAGAAATTCAA
TGGAAGTTTGAATGAATTTTGGGGACAGTGTGACGATGAGAAAATCAACG
AAGGTGAGCGTGAACACACTGAATCATTTTACGGTGGCATGTATTGGGAT
CCCTATAGATGTGATATGAGAGAACGAAAGCATTATCAAACTTACCGAGA
AAAATACACCAAACGGGtgagaaaatattcaaagtATCTATTGTTTGCTT
TCCCAAAATCTCAAAAAGCTCACATCCTTTCGAAATGTGGAATCAAAGAA
TCATTTAAGTTCCTCGTTGAAGAGTATGAAGCTGGCTCCTCAATGTTCAA
AGAATATTCCAACACCTTTCTAGAGGAAGTTCCCATTGAGGAATTTTTCG
AAAGTTGTGAAACGTTGGAGGAGGTAATTGATGAAAGATTGAATGTTACC
ATGGTTATGCAGTTTCTTTTGAAAGTCGGCGACGTTGAGTTAACAAAATC
TTTTATCGATAAGGTTATGGGAGCTGAAAAATATTCAGGTAAATATTACG
GcatcgaagaagaagaaatgataaaacctttaattaatTTGTTGAAGGCT
TTTCCATGGCAACCCCTTAGTGAGTCGGTTGAGACAGTTATTAGTCATTG
TCCAAAAGAACAGTATGAATTTTGGCTAGATGTGTTTTCATCTACCGGTA
TCACTGAGATTGCACATAAAGTTCTTGCGATCAGTTTGCAGAAAATGATG
GATGATAAAAGATTCCTTCCGTTATGgttgaaaatattcaagcttgtttt
tgaaaacgaagAATTTGGTAATCGTTGGTGGGATAAGATCATCTCCTGTG
AAGATCTTGTCAACAAAGAATTCGATATCATTTCTCATATTTGTTTGAAT
CTACCCATTGAAACAAACCCAGTAAAGTTTCCTTCTCTTTTAACCGCTTT
GGTGACTTCAATGACAACCGAGGACAACCCATATTGTGTTAAGAGGTATG
CGGAAAAGTTACTTGATGTTATCGCCAAAATCAAAGGGAGTGAATTTTTC
GAAAGTGCTCTCACTAATTTAAGTAATCAGCTTGTTTCTGAAGGTCGTAT
CTCAACCTTGATAAAACTAGCAGAACTCTGTGCACCGAAAGATCAACATT
CTCGCCACAATGAAGAAGTTGTTAAACTATTTCTGGAAGGGTGTTTTGAT
TGGTTATCAAAAGCAACTTTCGAAAGGAAACATATACAAAGTGTTGTCGA
TATAGTTGTCCTTTTGAACCAGCACAAACAATTGTATAATGGTCCTATGA
TTGAGAAATACATAGAGTCGTGTCAGAAAATATCCGATCCTGATTTTATT
TGTAATGTTGTCAACAAGTTATTTACCATGTCATGTTCGTTTTACTTTCT
CAAGCCGTTACTTCAATCACTTGCCAATTTGTTAAGCACCAAAACATTCA
CCGATCACAAAGCAATGTCTTCAACTATCAACCACATGTTCATCCAAGGA
CCTGAGTTTGATCATCTATTGACTCTTCTGTTGACTAACGAAAAAATTCT
CTCTTCCATTGATCTTCTCAATGAAATTCTACATTCACTTCTCAGCAAGG
ACGACAACATCGAACAATTGAAAACCAGTATCAATTTCCATGGATTGTTG
ACCAGCTTCGTCTCTCTAATGCAACAACCGAATAACACAAACAAAGAATT
TTCATCTCTCCGTCTGGTTCATGAATTTCTACTCAGCTTAAGCGACGAAT
CTCCTTTACATCAACTGGTTCCTCAAATAATTGACACAAGTTTGCTGAAA
AACGATTTCCCTAAGTGTATACAATATCTATCCAAACTTTCCATCCGTGA
AACTGAGACATTCAAAACCTTCCTCACAACGACAATTCATGCTTTGGGAA
TCTTCCTCCGCCGATATAATACAATCATCGATGCTGAATACCAACTTATT
TATGACTTCATAAAACTATTGCTTAAGAACGACCACTTCACGCCCTTTGC
TTTACAGCTTGCTTCGTTGAAAGACCTTACCAACAACGATTATAGAAACT
TATATCATAACAATAAAGAAAGGTCCGTTCTGGAAAATCTTCTGGCTGCT
TTCAAAAATCACCGCAACACCGATTTCTTTGCCGCCCTCCAGCTCTCTCG
CTCAAGGAGTTTGCAAATCTTGAAAGATTATGGTCCCCCTAAATTCACCT
GGGAGCAACCTGATGCGAATATCGATCACGCCAAAGTTCAGGAGTTTCTC
CGAAGTAAACGCGAAACAATCATATTGCGAACTTTCCGATCCTATAAAAG
CGCTAATAACCGGATCAAAAAGCATAGTGGATATAACAAAGACGGGAAAT
ACAGTTTTACCGCCCAAATTCGTACCGCCAAAAACGGGTGGAAGAGTTTA
GTGGATGTTAAGAAAGGGCGTCACATTCACGAAGATAGAGAGGAAAGATT
TCAGAATCTTATAAATGAATTGGAAGAAAttcttgaaagtttgaaaatat
caaACGTTGAAAATCCATTAGCTGCGTAATTTGAATCAATTTCTTTAGGG
TTATCTTCATATTCATTTAATCTTTATACTAATAAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042346XLOC_042346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067804-exon-scaffold_476-1491911889:188242..191182TCONS_00067804-exon-scaffold_476-1491911889:188242..191182Clytia hemisphaericaexon
TCONS_00067804-exon-scaffold_476-1510915933:188242..191182TCONS_00067804-exon-scaffold_476-1510915933:188242..191182Clytia hemisphaericaexon
TCONS_00067804-exon-scaffold_476-1575043694:188242..191182TCONS_00067804-exon-scaffold_476-1575043694:188242..191182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:188242..191182 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2302	11.4377	6.0198	4.056	1.36875	1.11939	1.31725	1.1539	0.658653	0.894663	1.18274	0.580927	0.46506	0.335501	0.975744	1.02358	1.16143	1.0488	0.735875	0.67893	1.03028	0.484398	3.50972	3.44721	0.482711	0	0.583168	0.988179	3.45483	3.54726
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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