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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067800 ID=TCONS_00067800|Name=TCONS_00067800|organism=Clytia hemisphaerica|type=transcript|length=1016bp
AGAAATTCTTGGACACTTCAACCAAACCAATTTACattacaaaattcaaa
ataccATGAAGTTCTGGATGATGTCTTGTCTAAAGTTGCAGAAGAATTAG
ACTACAAACTCGAAAATGTCCAGGTTAAAATCAACAAACTTATGCTGTAT
CAAGAGAGTGATGATAACGATGATAATGATGATgggtttgtttttgaaaa
taacaacgAGACAGATAAAACATGCTTTGCCACACTTCTGATGCAACTGC
CATCTGTCTTCAAAGGTCATAAAGTTATTGTGTATTCTAAGGGAAAGCTC
CAAAGAATATTGATATCAGtgaatcaaaatatgaaataatttACACAGCT
TTCTTCAACAGTTGTCAAAGAAAGATGACATCATTAAAAGAAGGGTATCG
AATTGTTTTGATGTATGATTTGTTATGGATTGGTGATTGTCAACCTCCCA
ATGACCAAATGTTTCAGCAAAGTATCCAGAAGGCCTCCCTTCTTCTTGAA
AAGatTGATGAGGGTATTTTGTGGACGCTTGATGGAAAGTATGATAATGT
ATCACTTTCTGAACAACTTGCTCAAAATTATGGTGAAGATGTTTTGAATG
GCAAAGATCATCAAGTAATTTCTTGTTTGGCAAGAGCTAACGAGTTACTG
AGTACGTAGTATATCAATGTCATGATAGTGTAAAGGTCTTGTTAGACGAT
AACATTCGGtaacatttttgtgtaacattttctaaaaatagcaaatgtTG
TACAAAGTGTTACCGTGTAACATCGATTAACATTCAGAAACATTCAAATG
TTAACGAATGNATGTTGTACAAAATGTTACCGTGTAACATCGATTAACAT
TCAGAAACATTCAAATGTTAACGAATGTTACGCGCAGAtagcaaatcaaa
aaaaaatgatttgctCTACATGGTTAACATTTTGAATCAAAGGATGCCGC
catttaaagggaatttaaaaggATACTTCAAGTGCGCACGTGTTTTTTCG
ccgatttttctctctt Run BLAST on NCBI transcript from alignment at scaffold_476:184492..187613+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067800 ID=TCONS_00067800|Name=TCONS_00067800|organism=Clytia hemisphaerica|type=transcript|length=3122bp|location=Sequence derived from alignment at scaffold_476:184492..187613+ (Clytia hemisphaerica)
AGAAATTCTTGGACACTTCAACCAAACCAATTTACattacaaaattcaaa
ataccATGAAGTTCTGGATGATGTCTTGTCTAAAGTTGCAGAAGAATTAG
ACTACAAACTCGAAAATGTCCAGGCTAAAATCAACAAACTTGNGATTTCT
CTCATCAGAAATTCTTGGACACTTCAACCAAACCAATTTACattacaaaa
ttcaaaataccATGAAGTTCTGGATGATGTCTTGTCTAAAGTTGCAGAAG
AATTAGACTACAAACTCGAAAATGTTCAGGTTAAAATCAACAAACTTATG
CTGTATCAAGAGAGTGATGATAACGATGATAATGATGATgggtttgtttt
tgaaaataacaacgAGACAGATAAAACATGCTTTGCCACACTTCTGATGC
AACTGCCATCTGTCTTCAAAGGTCATAAAGTTATTGTGTATTCTAAGGGA
AAGCTCCAAAGAATATTGATATCAGtgaatcaaaatatgaaataatttAC
ACAGCTTTCTTCAACAGTTGTCAAAGAAAGATGACATCATTAAAAGAAGG
GTATCGAATTGTTTTGATGTATGATTTGTTATGGATTGGTGATTGTCAAC
CTCCCAATGACCAAATGTTTCAGCAAAGTATCCAGAAGGCCTCCCTTCTT
CTTGAAAAGGTACAGTAGCTTAAATGTTACAGCTTTAAAACACNAATGAT
GATgggtttgtttttgaaaataacaacgAGACAGATAAAACATGCTTTGC
CACACTTCTGATGCAACTGCCATCTGTCTTCAAAGGCCATGAAATTATAG
TGTATTCTGAAGGGAAAGCTCCAAAGAAGATACAATTTGATATCAGggaa
tcaaaatatgaaataatttATACAGCTTTCTTCAACAGTTGTCAAAGAAA
GATGGCATCATTAAAAGAAGGGTATCGAATGGTTTTGGTGTATGATTTGT
TATGGATTGGTGATTGTCCACCTCCCAATGACCAAATATTTCAGCAAAGT
ATTAAGAAGGCCTCCTTTCTTCTTGAAAAGGTACGGAAAATGCCTGACCA
TTTGACCTTTTTCTCACTCGggttttttataagtttgtcGCTACTGATAC
AAAGAAAGTTGTGTGTCCGTTCATTTGCTTtgctaaaaaattgaaacaaa
tcgATTGTAAAGATTTAAGTGCTTGAGTCCTGTTATGGAGGGTGTTTGAG
CTAGAATATGtatttctcaacttcagttgagttagaaNgattttttcact
gttccgcgtcgcacccaagactcgttttttcactgttccgcgtcgcaccc
aagactcgtttgttcactgttccgcgtcgcacccaagactagtttgttca
ctgttccgcgtcgcacccaagactcgtttgttaactgttccgcgtcgcac
ccaagaccgattttttcactgttccgcgtcgcacccaagactgatttttt
cactgttccgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
ttttatttttcaaaaattttgatttttggggcctggggacgagttttcgc
caaaacgaggctaaaactttggggcagcctggagacttcaaagattgttc
gatttggctgaaattttgcacacttgttccttgggtgaatatctgggggt
gtttttttcattttttttNTGTTCCGCGTCatacccaagaccgatttttt
cactgttccgcgtcgcacccaagactgttttattcactgttccgcgtcgc
acccaagactggtTTTTTCACTATTCcgcttcgcacccaagactgatttt
ttcactgttccgcgtcgcacccaagactgatttttttacTGTTCCACGTC
GTActcaagactcgtttgttcactgttccacgtcgcacccaagacttgtt
tgttcactgttccgcgttgcacccaagaccaattttttcactgttccgcg
tcgcacccaagactgattttttcactgttccgcgtcgcacccaagactcg
ttttttcactgttccNaaaacgaggctaaaactttggggcagcctggaga
cttcaaaaattgttcgatttggctgaaattttgcacacttgttccttggg
tgaatatctgggtgtggttttttgcatttttcagaaattttgttttttgg
ggcatggggacgagttttttgccaaaacgaggctaaaactttggagcagc
ctacaggcctccaaattggtcggatttggttgaaatttggcacatttgtt
cattgggtgaatatctgggtgtggttttttgcatttttcagaaatttttt
tttccggtggaaaaatgcctgaaatatgccggaaaaactggttttttggc
attttctcgagattttatcattagttttttctgattttttactcAAAGAT
GCGTGTTAACAATGCcctaaacatggccgagtccgatttttcagaaattt
ttttttccggtggaaaaatgcctgaaatatgccggaaatcgccttTTTTC
GNggtgaatatctgggggtctacaattgggcctatgaataatttgaagcc
actgaagttgagcccagtgcgttgcgcacgttcgactattttgttttttt
cttcattagatTGATGAGGGTATTTTGTGGACGCTTGATGGAAAGTATGA
TAATGTATCACTTTCTGAACAACTTGCTCAAAATTATGGTGAAGATGTTT
TGAATGGCAAAGATCATCAAGTAATTTCTTGTTTGGCAAGAGCTAACGAG
TTACTGAGTACGTAGTATATCAATGTCATGATAGTGTAAAGGTCTTGTTA
GACGATAACATTCGGtaacatttttgtgtaacattttctaaaaatagcaa
atgtTGTACAAAGTGTTACCGTGTAACATCGATTAACATTCAGAAACATT
CAAATGTTAACGAATGNATGTTGTACAAAATGTTACCGTGTAACATCGAT
TAACATTCAGAAACATTCAAATGTTAACGAATGTTACGCGCAGAtagcaa
atcaaaaaaaaatgatttgctCTACATGGTTAACATTTTGAATCAAAGGA
TGCCGCcatttaaagggaatttaaaaggATACTTCAAGTGCGCACGTGTT
TTTTCGccgatttttctctctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067800-exon-scaffold_476-1491911889:184492..184614 | TCONS_00067800-exon-scaffold_476-1491911889:184492..184614 | Clytia hemisphaerica | exon |
| TCONS_00067800-exon-scaffold_476-1510915933:184492..184614 | TCONS_00067800-exon-scaffold_476-1510915933:184492..184614 | Clytia hemisphaerica | exon |
| TCONS_00067800-exon-scaffold_476-1575043694:184492..184614 | TCONS_00067800-exon-scaffold_476-1575043694:184492..184614 | Clytia hemisphaerica | exon |
| TCONS_00067800-exon-scaffold_476-1491911889:184771..185150 | TCONS_00067800-exon-scaffold_476-1491911889:184771..185150 | Clytia hemisphaerica | exon |
| TCONS_00067800-exon-scaffold_476-1510915933:184771..185150 | TCONS_00067800-exon-scaffold_476-1510915933:184771..185150 | Clytia hemisphaerica | exon |
| TCONS_00067800-exon-scaffold_476-1575043694:184771..185150 | TCONS_00067800-exon-scaffold_476-1575043694:184771..185150 | Clytia hemisphaerica | exon |
| TCONS_00067800-exon-scaffold_476-1491911889:187101..187613 | TCONS_00067800-exon-scaffold_476-1491911889:187101..187613 | Clytia hemisphaerica | exon |
| TCONS_00067800-exon-scaffold_476-1510915933:187101..187613 | TCONS_00067800-exon-scaffold_476-1510915933:187101..187613 | Clytia hemisphaerica | exon |
| TCONS_00067800-exon-scaffold_476-1575043694:187101..187613 | TCONS_00067800-exon-scaffold_476-1575043694:187101..187613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:184492..187613 + |
Blast
The following BLAST results are available for this feature:
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