TCONS_00067785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067785
Unique NameTCONS_00067785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067785 ID=TCONS_00067785|Name=TCONS_00067785|organism=Clytia hemisphaerica|type=transcript|length=2194bp
GCTCAAATTAACAAATTTAGAAATCGCATTTCctaatcaaagaaattttc
tttccctAATTTTTCCCTAATTCAAGAAATCTCACTTCCCAATCCAGAAA
TAGATAATAGAATAAAGCGAGAAAGGTACTTTACCCTTTATTTAGCTTGT
AGAGAGTAATCAAGTAAAAAGGTTGTGATTTCCCAACCCATCCATAATCT
ATTCAGAAAAACTTGGGATTTTTAATTTCCCGATGCAATTGTGAATGTGC
AACTAGAAAGTTAAAAATAATTAGTTTTCCACGTGCAGAAATACATTGGT
ATTCCAGAATGGGAAAATAGGTTTCCCTAGTTTCCTTACTTTTCCGAACT
TAAAATTCCAAACTACGTAATGTGATGGAATAATAAACATCCGAAAATTG
ACAATCCCTAGGCTAggaaatcaagatttttttccTATAGGTCTAATAAA
CATTTTATGGCACGTCAAAttattatatgtttttttatcagaaatttcca
aaaagaaagtACATGATTTAATATAACTTTAACCTTTCTTTACACAGATT
CAATATGTCTATTTTTCAATTAAGAAGAATTGGTCTTCCTCCATCAGTTG
AAGATGCTAGAAGTACATACACAATAAAAGGAGATTCTTACATTGGACGT
GGTAAAGATGTTGATATCTTTCTTGATTCAAACATCCGAAAAGGATTGAT
TTCCAGAGCACATTCACACATCTTAAAGCAATCCTCTGAAGATGGAAATG
ATATTTACTCTTTACATGATACAAGTTTGAATGGAACTTATGTGAACGAT
ACTCGAATCAAAGGACCACAAGTGCTGAAAGATGGTGATCGAGTTGTATT
TGGACATTTGAGAGGTGCAATTATTGACCCAGGTGAATATGCACCACAAA
ATGAaactgaatttctttttttgTTTGAAAAGACCATGAAGGAAGAAGAT
GACATTGATGCAGATGTCAAGGAAGAGTCTTCGGTTTTCATGTCACCAAA
CTCATTGAATGCTGATGCTGTTGGTCTACCTGGTCTCTTGTCAACTATAA
ATTATCCAGATAGGAGCTCAAGCACAAGTGAGAGTATTTCGAAGAAGGTT
TTACGAGATAGTGGTTTGTGCAGCAGCAAATCACAAGATGATGAGAGTGA
TGAACTTCATTCCATTATTTCAAATGTAACATCCAAAATATTGAATGATG
ACAAAGCTTGCACCAGTGATTCTTTCAATTTGGATCTCAAGATTACATCC
AATGAAAACAGACCACCACCAAATCATCCACGAAACGGATTACTTTCAAA
TCTTCTCAACCCATCAGACAGTCCAAAATCATTTACTTCAATCACAGATC
CCGACATTAAACGTGACACGTCACTAAACATCACTCACGTTTACGAGCAC
ATTGAACCGAAATATCTAACGGACGCTCTACGTACGAAAGTTCGAAACGT
GTTACGTGAACATGACACGAAACAAACGATAAATAATGAGCTCCACAAAC
GCCACGAAATTGTCATTCCTCTCGATGAGGATGATAAGGAAGATAGAGAA
AGTATTTTCAGCGATAAAAGTGAAGAAATCCTTGACTCAGACTCTGATTC
AGATTTCGTTCCATCAAAATCGGACTCTGAAGCTGAAATGTTTACAGAGC
CAAAACGTACACGTAAAACACCGCAACGGTTTTCGCCTAAAGCAGGGAAA
GCTAAACGtcgaaaaacaattgaaacaaaaactcctaaagttttaaaaac
aaaagtttctgAATCGAAAACTGCAACATCTACTCCACAAACTAGGCGAC
CACTTGGCCGACAGAATGGTACTAAAGTTGGCAATAAATTTGTACATGAT
AAATGTGCGGCTTGGGATTGTATGAGACCTTCGGCTGCTATTAAACAAAT
CACATGGGTAGCTTGTGATGATTGTGATGCGTGGTATCATGTTTCATGCT
CAGGGTTGAGTGCTTCTGATGCTATGAAACCAGACACGAAATATCACTGT
GGTTGTGGTTGATTTCGACTACATTTAAATTCTTCTATCTTTTCGTCAtc
ataatattttttgactttttaatcTGTACATATGGTcataaaatgtaaat
atttgtAAACTGATGTTTTTGTCTTTGGATTTTTTCTCTATTATcttttt
tgtttaaagaaaaaacacATGGTGTTTTTGATACTTTATCTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_475:70385..76072-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067785 ID=TCONS_00067785|Name=TCONS_00067785|organism=Clytia hemisphaerica|type=transcript|length=5688bp|location=Sequence derived from alignment at scaffold_475:70385..76072- (Clytia hemisphaerica)
GCTCAAATTAACAAATTTAGAAATCGCATTTCCTAATCAAAGAAATTTTC
TTTCCCTAATTTTTCCCTAATTCAAGAAATCTCACTTCCCAATCCAGAAA
TAGATAATAGAATAAAGCGAGAAAGGTACTTTACCCTTTATTTAGCTTGT
AGAGAGTAATCAAGTAAAAAGGTTGTGATTTCCCAACCCATCCATAATCT
ATTCAGAAAAACTTGGGATTTTTAATTTCCCGATGCAATTGTGAATGTGC
AACTAGAAAGTTAAAAATAATTAGTTTTCCACGTGCAGAAATACATTGGT
ATTCCAGAATGGGAAAATAGGTTTCCCTAGTTTCCTTACTTTTCCGAACT
TAAAATTCCAAACTACGTAATGTGATGGAATAATAAACATCCGAAAATTG
ACAATCCCTAGGCTAGGAAATCAAGATTTTTTTCCTATAGGTCTAATAAA
CATTTTATGGCACGTCAAATTATTATATGTTTTTTTATCAGAAATTTCCA
AAAAGAAAGTACATGATTTAATATAACTTTAACCTTTCTTTACACAGATT
CAATATGTCTATTTTTCAATTAAGAAGAATTGGTCTTCCTCCATCAGTTG
AAGATGCTAGAAGTACATACACGTGAGTACTGTCTTCTCCCATTTTATTG
AAATATTTGGTACTCTTTTTGTCTTTCTAAACTTATCTCTTTTTAAATAG
AAATTAAAGCTGGCTGTCCACTGAAAAAATACCTGTTTACTAAAAATAAA
TTCTGCTCTTTTGCAAATTAAACAATAGATTTTGAACTCCAAACATATTG
CTGTATTTAGATTCATTTTTGCTTCAAAGTAATGTGTGAAGAACTTCAGT
GGTCTACCAGGTCAGATAGCTAAGTCTCTGTAATGCTGTACTTGATCTTT
CAGAATAAAAGGAGATTCTTACATTGGACGTGGTAAAGATGTTGATATCT
TTCTTGATTCAAACATCCGAAAAGGATTGATTTCCAGAGCACATTCACAC
ATCTTAAAGCAATCCTCTGAAGATGGAAATGATATTTACTCTTTACATGA
TACAAGTTTGAATGGAACTTATGTGAACGATACTCGAATCAAAGGACCAC
AAGTGCTGAAAGATGGTGATCGAGTTGTATTTGGACATTTGAGAGGTGCA
ATTATTGACCCAGGTGAATATGCACCACAAAATGAAACTGAATTTCTTTT
TTTGGTAAGTTTAATCAAATGAGGTTTTTATAGTGCTGACTTTTAGACTC
TTTTTGGTCAATTTTGGGATTTGAAATTTTTGAGGAAACGGGTCCAGGTA
AATTTCCAGGCCTTTTTTGCTACCAGATAACGGTGGCAGAAACTCAATCT
TTGCTTGAATTTTGAAACTCAATCCTAATTTTTGTACATGACCCATGAGA
ATCATGTCAGAAGTTTGATGTCCTAGGCCCTTATTAACAGAAAAAGCCCA
TTCTGAGGTTAATTCTCTGTGTTTTAATAGTTCCTAACTAATTAAACAGG
GTTGATTATTTTGTTCTTCGAAAAATTCAAACTCAATCTTTGAAATAAAA
ACGGTAGCAGCTCAAAACCCTGGAAATTTGCCTGATTCGAGTCTAATATT
TCAAAATCTTGTGGTACTTTTTCCAAGTGGCATTTTGAAATAATATTTTT
ATCCTTTCATTTTCTAGTTTGAAAAGACCATGAAGGAAGAAGATGTATGT
TTACTCTAAAAAGTGTGATACATTTGACGCTCTTCAAATCTAATCGACTT
TTTTCTATCATTCGATACGCTACATTATTCGATAATATTGAAAGTTTCCG
TCAAAAAAAAAACTCATAAACCACGCTCCTCAATTCAATACACTCACTTA
TTCAATGAAAATTCCCTCTAAAATCGAATTGGAAAGCGTCAGCTTTATTA
TCTCTGTCTTTTTTGTCATCTTTATTTTTTGATTAGGTCTAGATTAAATT
CCTTTTTACAATCAACATATGATTTGATGCATAATTTGCGCACTTTCTAA
GTATGGAATACCATCTAAAAATGGGTAGAGCAGAAATAATGCTTGTATCG
CAGTATTTAGTGATCCAGGATTTTTCCATTGTGAATGGAGGTCCTTGTCT
GCTCTCAACTTTATCACAATCGAATCTTAAAAATACAATTTATAGATATT
ATACGCTTATTTGTTCAGGACATTGATGCAGATGTCAAGGAAGAGTCTTC
GGTTTTCATGTCACCAAACTCATTGAATGCTGATGCTGTTGGTCTACCTG
GTCTCTTGTCAACTATAAATTATCCAGATAGGTATAGTTATGCCTTCCAA
AAGGGTCGGTTTCAACTTGCGCGCGCGCTTCGCTCGCACTTTTACGAGTA
AAGCTTCCACGCTATTGGTCAAGAGAAAAATGAAGCAACTCCATCAACGT
GATCTGACGTAACGGTTGAAAAAAAGCCGAAATGTGTTTTTTTCGAGCGC
GTGCTATATTTTTATGACGTAATCTTTTTTCCAAGCAAAAAAAAATGAAG
CCAGAAAGTGTGATCGCAGCGCGCGCAAGTGGAGACCGGACTTAAGACTC
GAAATTTCAAAAAAATGCAATAAGGTCTAGGGATGTTGGATGATGGGAAA
TTTAACCAGGCCCGATATCAAGCACCTCAGAGACTCCAAAAATCTCACCA
AAAATTTGGCATGTTTCATTCCCTTTCATTGGCGATCTACACATTGATGA
TTTTTGAGAAAAAAAAACCTTACAAAGTGTTTTGACGCAGAGTCAACTTT
TTTCGTTAATGCAGGAAATCCGAAAATTTAAAGTGACGTCAAAAATCGAA
TTTTTAGAGCCCGAAAATCTGGGTTCCAAAAACTTTCGATTAAGTCGCAA
AGTGAAATAGACGTTACTACCAAGAAAAAAGCCACAACCTCTACTTAGAT
CAAAGGCAAATGGATTAGCAGAAGAACTTTGCGTTAGGAAAACCAGTCCC
CATCACTTCCCCGATGGGAATGTTTAATTTTTCACTTGCCATTGTACAGT
TTTGCGTGAGATCATACAACTTCGATTTCCCAAATGGGCAAAAAAAACTG
AAAATATTTCCCCAATGGAGCTGCTCTGGGGGACTGATAAGAAGAAAATA
TAAACTTGATCAATCTTCAATAAAGTTTCGGAAAATAATGAGTAATTTTA
TACTCTTTAGGAGCTCAAGCACAAGTGAGAGTATTTCGAAGAAGGTTTTA
CGAGATAGTGGTTTGTGCAGCAGCAAATCACAAGATGATGAGAGTGATGA
ACTTCATTCCATTATTTCAAATGTAACATCCAAAATATTGAATGATGACA
AAGCTTGCACCAGTGATTCTTTCAATTTGGATCTCAAGATTACATCCAAT
GGTAATATTTTCCTGTTTTTATTTCTTGGGAGACACAAAAGGCTTGACTA
AAAGCAAACTGGGAAACAGAATTTTTTATCTTTAAGGGTTTATGATTTAG
CATATCATCCAGAAATCTTCCTGGATTTTTTTTGATTTCCACTTCAAATA
TGGTATTGCTTCGTTACTTTTTCGTTCCTTTTTTTTTCCTTGTTGGACCT
ACCCCGGTGGAGGTCCTATAAATTAACCTCTGCCCGTTCGTCCGTCCGTT
CGTTACCAACTTTTCTCGAGATTGGCTCATTAGTTTCTGATTTTTTGCAC
AAAGATGTGTAACTATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAA
AAAAAAAATTTGGGGGCAAATTTGGGCTAAAAAACGGCTAAAAAAAGGGT
TTTTTGGACTTTGTGAAAAATTGGATCATTGTTTTTTTTCTGACTTTATG
CATGAAAGTAGGGTACCATCACAGGTAAAAAATGGCTCAAGCAGATTTTT
GCAAAAAAAATTTGTTGGCTCAAAAAACGCATGGTTATCTATAAGAATCA
CTATTGATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTTGTA
TGAGATAGATTTTTTTTTTGCTCACGAGGGCTTACTTTTTGAAGGATATT
TGTGTTTAGACATGAAATTTTGCCTGCTTGGCGTGTTTTTATAGAAAACT
GGCCATATTCGATATTTTTTAATAAGCACATTATCAATTACTTAGGTATT
AGCTTTTCTCGTGATTGGCTCTTTCATTCTTTATGATTTTTTGCACAAAG
ATGCATAACTAAAATTTTTTGTAAAAAACGAATTTTTAAGCTCAAAAAAC
GCATCTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTT
AGCCAAATTACTCAATTTTTTGATGAGATAGATGTTTTTTTTGCTCACGA
ATATTTCAAGAGCATGAAATTTTGGTTTCTAAACGTTTTTTCATAAGAAA
CAAACNATTGGATCGTTGTTTTTTTCTGATTTTTTGCATGAAAGTAGGAA
AAAGATGGCTCAAACAGATTTTTGTAAAAAACGAGTTTTTCAGCTCAAAA
AACGCATTTTTATCTATAAGAATCACTATTAATACAATAATGACCGGTTA
GTGAGGGCTGNGTGTTCTGAATGATTGTTTAATGGTCACGCTCACGTAGA
TATCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTA
TCATTTGTTGGATTTGGTCTAAAACGTTGATTAAAGGTGTCTAAATTGTT
CTGATTCATCGCGATTTTGTATTAAGGTTGACTGCTAGGTTAGTCAAATG
TCAAAATATTTTACTCATTCTTACTAACATTGGTTTTATTCTCTTCAGAA
AACAGACCACCACCAAATCATCCACGAAACGGATTACTTTCAAATCTTCT
CAACCCATCAGACAGTCCAAAATCATTTACTTCAATCACAGATCCCGACA
TTAAACGTGACACGTCACTAAACATCACTCACGTTTACGAGCACATTGAA
CCGAAATATCTAACGGACGCTCTACGTACGAAAGTTCGAAACGTGTTACG
TGAACATGACACGAAACAAACGATAAATAATGAGCTCCACAAACGCCACG
AAATTGTCATTCCTCTCGATGAGGATGATAAGGAAGATAGAGAAAGTATT
TTCAGCGATAAAAGTGAAGAAATCCTTGACTCAGACTCTGATTCAGATTT
CGTTCCATCAAAATCGGACTCTGAAGCTGAAATGTTTACAGAGCCAAAAC
GTACACGTAAAACACCGCAACGGTTTTCGCCTAAAGCAGGGAAAGCTAAA
CGTCGAAAAACAATTGAAACAAAAACTCCTAAAGTTTTAAAAACAAAAGT
TTCTGAATCGAAAACTGCAACATCTACTCCACAAACTAGGCGACCACTTG
GCCGACAGAATGGTACTAAAGTTGGCAATAAATTTGTACATGATAAATGT
GCGGCTTGGGATTGTATGAGACCTTCGGCTGCTATTAAACAAATCACATG
GGTAGCTTGTGATGATTGTGATGCGTGGTATCATGTTTCATGCTCAGGGT
TGAGTGCTTCTGATGCTATGAAACCAGACACGAAATATCACTGTGGTTGT
GGTTGATTTCGACTACATTTAAATTCTTCTATCTTTTCGTCATCATAATA
TTTTTTGACTTTTTAATCTGTACATATGGTCATAAAATGTAAATATTTGT
AAACTGATGTTTTTGTCTTTGGATTTTTTCTCTATTATCTTTTTTGTTTA
AAGAAAAAACACATGGTGTTTTTGATACTTTATCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042334XLOC_042334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067785-exon-scaffold_475-1575043694:75451..76072TCONS_00067785-exon-scaffold_475-1575043694:75451..76072Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1575043694:74869..75169TCONS_00067785-exon-scaffold_475-1575043694:74869..75169Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1575043694:74379..74405TCONS_00067785-exon-scaffold_475-1575043694:74379..74405Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1575043694:73792..73904TCONS_00067785-exon-scaffold_475-1575043694:73792..73904Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1575043694:72722..72912TCONS_00067785-exon-scaffold_475-1575043694:72722..72912Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1575043694:70385..71324TCONS_00067785-exon-scaffold_475-1575043694:70385..71324Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1510915933:75451..76072TCONS_00067785-exon-scaffold_475-1510915933:75451..76072Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1510915933:74869..75169TCONS_00067785-exon-scaffold_475-1510915933:74869..75169Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1510915933:74379..74405TCONS_00067785-exon-scaffold_475-1510915933:74379..74405Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1510915933:73792..73904TCONS_00067785-exon-scaffold_475-1510915933:73792..73904Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1510915933:72722..72912TCONS_00067785-exon-scaffold_475-1510915933:72722..72912Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1510915933:70385..71324TCONS_00067785-exon-scaffold_475-1510915933:70385..71324Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1491911889:75451..76072TCONS_00067785-exon-scaffold_475-1491911889:75451..76072Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1491911889:74869..75169TCONS_00067785-exon-scaffold_475-1491911889:74869..75169Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1491911889:74379..74405TCONS_00067785-exon-scaffold_475-1491911889:74379..74405Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1491911889:73792..73904TCONS_00067785-exon-scaffold_475-1491911889:73792..73904Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1491911889:72722..72912TCONS_00067785-exon-scaffold_475-1491911889:72722..72912Clytia hemisphaericaexon
TCONS_00067785-exon-scaffold_475-1491911889:70385..71324TCONS_00067785-exon-scaffold_475-1491911889:70385..71324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_475supercontigscaffold_475:70385..76072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.64261	1.95627	2.33472	1.07958	3.16843	1.41896	0.805514	0.848371	0.496472	1.1651	1.46671	0.62437	0.347871	0.883521	0.638349	0.402865	1.16336	0.291891	1.32078	0.824534	1.63822	2.6888	1.97095	2.06949	1.7658	2.0262	0.905575	0.687726	1.67233	0.893466
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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