TCONS_00067717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067717
Unique NameTCONS_00067717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=transcript|length=1845bp
TTCAGATTTAGATGAAACAGAATTATTGTTCTTTTAGCTAGTTAAAGTAA
AATTAGGGATTATGCTTGGCTTTATTGAATGGTTGCTAATCTGTTTACCG
CTGGCATTTCATTCTTTCACCCTTCATCATCTTACCTTACTCACAACCTC
TTTTATTTTAACACTATTTGGACGAAGTCAATCAAACTTAAGATGGAACT
ACCAATCGAAGATGGAATTATTGTTTCGTTGTTTCAGCGATGATGGTTTT
GTCTACCCTATTGTTGTCTTCCCAACATTTTTCTGCATCAAAGATTCTTT
GCAAAATCTGCAAGGAGACTCCAATGGTTACTTTTACGCTGTCATGACAT
CAACATTATTTGCAGTATTTGGTTTTTTTGTTTGCTTTGGACCTTTGATG
ACTATATTATTATTTGCTACTGTGTTCATTATTATATCCCCAACAATAAC
AACTGGATGGTTCATTGTCATTTTAGCAACGATTGCagtctattttgcct
tatttttcACCATTGTGAGACATTCGCCAAACAGTTTCACTTTTGGAGAA
GCTGGTTTAATAACTCAAGTTATTGGTTATGTTTTGATGAAATTCACAAA
GAATATATTATATACCCTTCAAAACAGTATTGCAATTTCGAATGACAATA
TACATCTACAGTTTATATTTGTACTCTTTGGGTCAACCTGTTTAACAATA
ATCATTCTATCACCTATTTTGTATTGCAAAAGATACTGGTGTCCTCAATA
TATTGATCAAGTTGTGGCTTCTATTTCCTTTTACATCGGATTGGTTTTGA
ACCTTATTTTCGTTTTTGTTCCAGCTTTTATTTACCTTATGAATGAGGCA
AATATTTTAACGTGGCTGTTACAAGAAATTACAAAAACTCAATTTCGTCT
TGCACTGATGGTATACTGGCTGATTCTAACCATTTCATCCTTTGCTGTAA
CTTGTTGGTTTTTATCTGGAGAGAAACACATAGAAAAGACTGTTatacga
aaaatatttcatggAATAGCGTTTTTGATCTTTTTACCCGCCTACAAAGA
TGTTGAATTTGTTGCTCTTGTGACTGCACTTGTTTTTGTTGCTTTCATTT
TCATCGAATTGGTCAGAGTGAATAATATTGAACCAATTGCAAGAATATTG
ACACAATATTTGGAACCATTCAGAGAACAACAGGACAGTGGTCCATTGAT
TTTGACGCATATTTATTTGTTATCTGGTTTATCTTTTCCATTTTGGTATG
CTTTATCCGAGGAGAATCTAAACAATCCGACAAACCTTACTTTATTCCAA
TTTTTGACAATCAACGCTGGGGTTGTTTCCTTATGTGTTGGTGATACGTT
TGCATCTATTACTGGTAAACTCTTTGGAACTCAGACATGGCCAAACCGAA
GTAAAACCTATAAAGGAACATTGGGTTGTTTCCTTTCAATGTTGATATTT
AGTTTGATTTctatattctattttcaatttcatgtaGATTTATACCAAAT
AATTTTATTAGTATTTTTTTGCGTTTGTGTCAGTTTATTGGAGAGTATTT
CAAACCAGattgataattttttgttaCCGATTTATGCCCTATTATTGTGT
AAAATGTTTCAATGAAGATTTAATTGTGTCTGATATAGTCTGTTTTGTTG
ctacacacgtttttttatgagaacaaactatattaagaacataaggcttc
gatggccaaaatgttaagagcatgttaagaacattttaaggctccgcgga
ctctaaaacacctgatttcttaagaaaaccgacaaaaatactcaaaaaat
agcgaaaataagaacatgttaagaacctttttacgcttaaaactc
Run BLAST on NCBI

protein sequence of TCONS_00067717-protein

>TCONS_00067717-protein ID=TCONS_00067717-protein|Name=TCONS_00067717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MLGFIEWLLICLPLAFHSFTLHHLTLLTTSFILTLFGRSQSNLRWNYQSK
MELLFRCFSDDGFVYPIVVFPTFFCIKDSLQNLQGDSNGYFYAVMTSTLF
AVFGFFVCFGPLMTILLFATVFIIISPTITTGWFIVILATIAVYFALFFT
IVRHSPNSFTFGEAGLITQVIGYVLMKFTKNILYTLQNSIAISNDNIHLQ
FIFVLFGSTCLTIIILSPILYCKRYWCPQYIDQVVASISFYIGLVLNLIF
VFVPAFIYLMNEANILTWLLQEITKTQFRLALMVYWLILTISSFAVTCWF
LSGEKHIEKTVIRKIFHGIAFLIFLPAYKDVEFVALVTALVFVAFIFIEL
VRVNNIEPIARILTQYLEPFREQQDSGPLILTHIYLLSGLSFPFWYALSE
ENLNNPTNLTLFQFLTINAGVVSLCVGDTFASITGKLFGTQTWPNRSKTY
KGTLGCFLSMLIFSLISIFYFQFHVDLYQIILLVFFCVCVSLLESISNQI
DNFLLPIYALLLCKMFQ
Run BLAST on NCBI

transcript from alignment at scaffold_472:404492..406336

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=transcript|length=1845bp|location=Sequence derived from alignment at scaffold_472:404492..406336 (Clytia hemisphaerica)
gagttttaagcgtaaaaaggttcttaacatgttcttattttcgctatttt ttgagtatttttgtcggttttcttaagaaatcaggtgttttagagtccgc ggagccttaaaatgttcttaacatgctcttaacattttggccatcgaagc cttatgttcttaatatagtttgttctcataaaaaaacgtgtgtagCAACA AAACAGACTATATCAGACACAATTAAATCTTCATTGAAACATTTTACACA ATAATAGGGCATAAATCGGtaacaaaaaattatcaatCTGGTTTGAAATA CTCTCCAATAAACTGACACAAACGCAAAAAAATACTAATAAAATTATTTG GTATAAATCtacatgaaattgaaaatagaatatagAAATCAAACTAAATA TCAACATTGAAAGGAAACAACCCAATGTTCCTTTATAGGTTTTACTTCGG TTTGGCCATGTCTGAGTTCCAAAGAGTTTACCAGTAATAGATGCAAACGT ATCACCAACACATAAGGAAACAACCCCAGCGTTGATTGTCAAAAATTGGA ATAAAGTAAGGTTTGTCGGATTGTTTAGATTCTCCTCGGATAAAGCATAC CAAAATGGAAAAGATAAACCAGATAACAAATAAATATGCGTCAAAATCAA TGGACCACTGTCCTGTTGTTCTCTGAATGGTTCCAAATATTGTGTCAATA TTCTTGCAATTGGTTCAATATTATTCACTCTGACCAATTCGATGAAAATG AAAGCAACAAAAACAAGTGCAGTCACAAGAGCAACAAATTCAACATCTTT GTAGGCGGGTAAAAAGATCAAAAACGCTATTccatgaaatatttttcgta tAACAGTCTTTTCTATGTGTTTCTCTCCAGATAAAAACCAACAAGTTACA GCAAAGGATGAAATGGTTAGAATCAGCCAGTATACCATCAGTGCAAGACG AAATTGAGTTTTTGTAATTTCTTGTAACAGCCACGTTAAAATATTTGCCT CATTCATAAGGTAAATAAAAGCTGGAACAAAAACGAAAATAAGGTTCAAA ACCAATCCGATGTAAAAGGAAATAGAAGCCACAACTTGATCAATATATTG AGGACACCAGTATCTTTTGCAATACAAAATAGGTGATAGAATGATTATTG TTAAACAGGTTGACCCAAAGAGTACAAATATAAACTGTAGATGTATATTG TCATTCGAAATTGCAATACTGTTTTGAAGGGTATATAATATATTCTTTGT GAATTTCATCAAAACATAACCAATAACTTGAGTTATTAAACCAGCTTCTC CAAAAGTGAAACTGTTTGGCGAATGTCTCACAATGGTgaaaaataaggca aaatagactGCAATCGTTGCTAAAATGACAATGAACCATCCAGTTGTTAT TGTTGGGGATATAATAATGAACACAGTAGCAAATAATAATATAGTCATCA AAGGTCCAAAGCAAACAAAAAAACCAAATACTGCAAATAATGTTGATGTC ATGACAGCGTAAAAGTAACCATTGGAGTCTCCTTGCAGATTTTGCAAAGA ATCTTTGATGCAGAAAAATGTTGGGAAGACAACAATAGGGTAGACAAAAC CATCATCGCTGAAACAACGAAACAATAATTCCATCTTCGATTGGTAGTTC CATCTTAAGTTTGATTGACTTCGTCCAAATAGTGTTAAAATAAAAGAGGT TGTGAGTAAGGTAAGATGATGAAGGGTGAAAGAATGAAATGCCAGCGGTA AACAGATTAGCAACCATTCAATAAAGCCAAGCATAATCCCTAATTTTACT TTAACTAGCTAAAAGAACAATAATTCTGTTTCATCTAAATCTGAA

Coding sequence (CDS) from alignment at scaffold_472:404492..406336

>TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_472:404492..406336 (Clytia hemisphaerica)
TCATTGAAACATTTTACACAATAATAGGGCATAAATCGGtaacaaaaaat
tatcaatCTGGTTTGAAATACTCTCCAATAAACTGACACAAACGCAAAAA
AATACTAATAAAATTATTTGGTATAAATCtacatgaaattgaaaatagaa
tatagAAATCAAACTAAATATCAACATTGAAAGGAAACAACCCAATGTTC
CTTTATAGGTTTTACTTCGGTTTGGCCATGTCTGAGTTCCAAAGAGTTTA
CCAGTAATAGATGCAAACGTATCACCAACACATAAGGAAACAACCCCAGC
GTTGATTGTCAAAAATTGGAATAAAGTAAGGTTTGTCGGATTGTTTAGAT
TCTCCTCGGATAAAGCATACCAAAATGGAAAAGATAAACCAGATAACAAA
TAAATATGCGTCAAAATCAATGGACCACTGTCCTGTTGTTCTCTGAATGG
TTCCAAATATTGTGTCAATATTCTTGCAATTGGTTCAATATTATTCACTC
TGACCAATTCGATGAAAATGAAAGCAACAAAAACAAGTGCAGTCACAAGA
GCAACAAATTCAACATCTTTGTAGGCGGGTAAAAAGATCAAAAACGCTAT
TccatgaaatatttttcgtatAACAGTCTTTTCTATGTGTTTCTCTCCAG
ATAAAAACCAACAAGTTACAGCAAAGGATGAAATGGTTAGAATCAGCCAG
TATACCATCAGTGCAAGACGAAATTGAGTTTTTGTAATTTCTTGTAACAG
CCACGTTAAAATATTTGCCTCATTCATAAGGTAAATAAAAGCTGGAACAA
AAACGAAAATAAGGTTCAAAACCAATCCGATGTAAAAGGAAATAGAAGCC
ACAACTTGATCAATATATTGAGGACACCAGTATCTTTTGCAATACAAAAT
AGGTGATAGAATGATTATTGTTAAACAGGTTGACCCAAAGAGTACAAATA
TAAACTGTAGATGTATATTGTCATTCGAAATTGCAATACTGTTTTGAAGG
GTATATAATATATTCTTTGTGAATTTCATCAAAACATAACCAATAACTTG
AGTTATTAAACCAGCTTCTCCAAAAGTGAAACTGTTTGGCGAATGTCTCA
CAATGGTgaaaaataaggcaaaatagactGCAATCGTTGCTAAAATGACA
ATGAACCATCCAGTTGTTATTGTTGGGGATATAATAATGAACACAGTAGC
AAATAATAATATAGTCATCAAAGGTCCAAAGCAAACAAAAAAACCAAATA
CTGCAAATAATGTTGATGTCATGACAGCGTAAAAGTAACCATTGGAGTCT
CCTTGCAGATTTTGCAAAGAATCTTTGATGCAGAAAAATGTTGGGAAGAC
AACAATAGGGTAGACAAAACCATCATCGCTGAAACAACGAAACAATAATT
CCATCTTCGATTGGTAGTTCCATCTTAAGTTTGATTGACTTCGTCCAAAT
AGTGTTAAAATAAAAGAGGTTGTGAGTAAGGTAAGATGATGAAGGGTGAA
AGAATGAAATGCCAGCGGTAAACAGATTAGCAACCATTCAATAAAGCCAA
GCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042282XLOC_042282Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067717-proteinTCONS_00067717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067717-exon-scaffold_472-1491911889:404492..406336TCONS_00067717-exon-scaffold_472-1491911889:404492..406336Clytia hemisphaericaexon
TCONS_00067717-exon-scaffold_472-1510915933:404492..406336TCONS_00067717-exon-scaffold_472-1510915933:404492..406336Clytia hemisphaericaexon
TCONS_00067717-exon-scaffold_472-1575043694:404492..406336TCONS_00067717-exon-scaffold_472-1575043694:404492..406336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:404492..406336 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.3794 13.6645 4.81274 3.82047 4.85045 3.59933 3.1537 3.40918 2.15374 3.20346 3.41276 2.06325 3.14246 2.34456 3.27201 3.80861 2.36082 2.2649 1.45327 1.76985 3.21511 2.94864 12.4168 12.6422 1.21144 2.78936 4.51064 2.79262 11.0403 9.05732
Blast
BLAST of TCONS_00067717 vs. Swiss-Prot (Human)
Match: DOLK (Dolichol kinase OS=Homo sapiens GN=DOLK PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.850e-21
Identity = 83/235 (35.32%), Postives = 118/235 (50.21%), Query Frame = 2
Query:  887 TQFRLALMVYWLILTISSFAVTCW------FLSGEKHIEKTVIRKIFHGIAFLIFLPAYK-DVEXXXXXXXXXXXXXXXXELVRVNNIEPIARILTQYLEPFREQQDSGPLILTHIYLLSGLSFPFWYALSEEXXXXXXXXXXXXXXXINAGVVSLCVGDTFASITGKLFGTQTWPNRSKTYKGTLGCFLSMLIFSLISIFYFQFHVDL-YQIIXXXXXXXXXXXXESISNQIDN 1567
            T  R+ L+ YW +L   +  V  +          +KH   T+ RK FH I    ++P    D   + +   +    FIF+E VR   I+P+   L  +L  F +++DSGPLILTHIYLL G+S P W  L         +L   + L   AGV+++ VGDT ASI G   G   WP   KT++GT+    + +I S+  I  F   VDL Y    ++     VSLLE+ + QIDN
Sbjct:  294 TDTRIYLLAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW--LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSIFAQII-SVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDN 525          
The following BLAST results are available for this feature:
BLAST of TCONS_00067717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DOLK1.850e-2135.32Dolichol kinase OS=Homo sapiens GN=DOLK PE=1 SV=1[more]
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