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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=transcript|length=1845bp TTCAGATTTAGATGAAACAGAATTATTGTTCTTTTAGCTAGTTAAAGTAA AATTAGGGATTATGCTTGGCTTTATTGAATGGTTGCTAATCTGTTTACCG CTGGCATTTCATTCTTTCACCCTTCATCATCTTACCTTACTCACAACCTC TTTTATTTTAACACTATTTGGACGAAGTCAATCAAACTTAAGATGGAACT ACCAATCGAAGATGGAATTATTGTTTCGTTGTTTCAGCGATGATGGTTTT GTCTACCCTATTGTTGTCTTCCCAACATTTTTCTGCATCAAAGATTCTTT GCAAAATCTGCAAGGAGACTCCAATGGTTACTTTTACGCTGTCATGACAT CAACATTATTTGCAGTATTTGGTTTTTTTGTTTGCTTTGGACCTTTGATG ACTATATTATTATTTGCTACTGTGTTCATTATTATATCCCCAACAATAAC AACTGGATGGTTCATTGTCATTTTAGCAACGATTGCagtctattttgcct tatttttcACCATTGTGAGACATTCGCCAAACAGTTTCACTTTTGGAGAA GCTGGTTTAATAACTCAAGTTATTGGTTATGTTTTGATGAAATTCACAAA GAATATATTATATACCCTTCAAAACAGTATTGCAATTTCGAATGACAATA TACATCTACAGTTTATATTTGTACTCTTTGGGTCAACCTGTTTAACAATA ATCATTCTATCACCTATTTTGTATTGCAAAAGATACTGGTGTCCTCAATA TATTGATCAAGTTGTGGCTTCTATTTCCTTTTACATCGGATTGGTTTTGA ACCTTATTTTCGTTTTTGTTCCAGCTTTTATTTACCTTATGAATGAGGCA AATATTTTAACGTGGCTGTTACAAGAAATTACAAAAACTCAATTTCGTCT TGCACTGATGGTATACTGGCTGATTCTAACCATTTCATCCTTTGCTGTAA CTTGTTGGTTTTTATCTGGAGAGAAACACATAGAAAAGACTGTTatacga aaaatatttcatggAATAGCGTTTTTGATCTTTTTACCCGCCTACAAAGA TGTTGAATTTGTTGCTCTTGTGACTGCACTTGTTTTTGTTGCTTTCATTT TCATCGAATTGGTCAGAGTGAATAATATTGAACCAATTGCAAGAATATTG ACACAATATTTGGAACCATTCAGAGAACAACAGGACAGTGGTCCATTGAT TTTGACGCATATTTATTTGTTATCTGGTTTATCTTTTCCATTTTGGTATG CTTTATCCGAGGAGAATCTAAACAATCCGACAAACCTTACTTTATTCCAA TTTTTGACAATCAACGCTGGGGTTGTTTCCTTATGTGTTGGTGATACGTT TGCATCTATTACTGGTAAACTCTTTGGAACTCAGACATGGCCAAACCGAA GTAAAACCTATAAAGGAACATTGGGTTGTTTCCTTTCAATGTTGATATTT AGTTTGATTTctatattctattttcaatttcatgtaGATTTATACCAAAT AATTTTATTAGTATTTTTTTGCGTTTGTGTCAGTTTATTGGAGAGTATTT CAAACCAGattgataattttttgttaCCGATTTATGCCCTATTATTGTGT AAAATGTTTCAATGAAGATTTAATTGTGTCTGATATAGTCTGTTTTGTTG ctacacacgtttttttatgagaacaaactatattaagaacataaggcttc gatggccaaaatgttaagagcatgttaagaacattttaaggctccgcgga ctctaaaacacctgatttcttaagaaaaccgacaaaaatactcaaaaaat agcgaaaataagaacatgttaagaacctttttacgcttaaaactc Run BLAST on NCBI protein sequence of TCONS_00067717-protein >TCONS_00067717-protein ID=TCONS_00067717-protein|Name=TCONS_00067717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MLGFIEWLLICLPLAFHSFTLHHLTLLTTSFILTLFGRSQSNLRWNYQSK MELLFRCFSDDGFVYPIVVFPTFFCIKDSLQNLQGDSNGYFYAVMTSTLF AVFGFFVCFGPLMTILLFATVFIIISPTITTGWFIVILATIAVYFALFFT IVRHSPNSFTFGEAGLITQVIGYVLMKFTKNILYTLQNSIAISNDNIHLQ FIFVLFGSTCLTIIILSPILYCKRYWCPQYIDQVVASISFYIGLVLNLIF VFVPAFIYLMNEANILTWLLQEITKTQFRLALMVYWLILTISSFAVTCWF LSGEKHIEKTVIRKIFHGIAFLIFLPAYKDVEFVALVTALVFVAFIFIEL VRVNNIEPIARILTQYLEPFREQQDSGPLILTHIYLLSGLSFPFWYALSE ENLNNPTNLTLFQFLTINAGVVSLCVGDTFASITGKLFGTQTWPNRSKTY KGTLGCFLSMLIFSLISIFYFQFHVDLYQIILLVFFCVCVSLLESISNQI DNFLLPIYALLLCKMFQ Run BLAST on NCBI transcript from alignment at scaffold_472:404492..406336 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=transcript|length=1845bp|location=Sequence derived from alignment at scaffold_472:404492..406336 (Clytia hemisphaerica) gagttttaagcgtaaaaaggttcttaacatgttcttattttcgctatttt
ttgagtatttttgtcggttttcttaagaaatcaggtgttttagagtccgc
ggagccttaaaatgttcttaacatgctcttaacattttggccatcgaagc
cttatgttcttaatatagtttgttctcataaaaaaacgtgtgtagCAACA
AAACAGACTATATCAGACACAATTAAATCTTCATTGAAACATTTTACACA
ATAATAGGGCATAAATCGGtaacaaaaaattatcaatCTGGTTTGAAATA
CTCTCCAATAAACTGACACAAACGCAAAAAAATACTAATAAAATTATTTG
GTATAAATCtacatgaaattgaaaatagaatatagAAATCAAACTAAATA
TCAACATTGAAAGGAAACAACCCAATGTTCCTTTATAGGTTTTACTTCGG
TTTGGCCATGTCTGAGTTCCAAAGAGTTTACCAGTAATAGATGCAAACGT
ATCACCAACACATAAGGAAACAACCCCAGCGTTGATTGTCAAAAATTGGA
ATAAAGTAAGGTTTGTCGGATTGTTTAGATTCTCCTCGGATAAAGCATAC
CAAAATGGAAAAGATAAACCAGATAACAAATAAATATGCGTCAAAATCAA
TGGACCACTGTCCTGTTGTTCTCTGAATGGTTCCAAATATTGTGTCAATA
TTCTTGCAATTGGTTCAATATTATTCACTCTGACCAATTCGATGAAAATG
AAAGCAACAAAAACAAGTGCAGTCACAAGAGCAACAAATTCAACATCTTT
GTAGGCGGGTAAAAAGATCAAAAACGCTATTccatgaaatatttttcgta
tAACAGTCTTTTCTATGTGTTTCTCTCCAGATAAAAACCAACAAGTTACA
GCAAAGGATGAAATGGTTAGAATCAGCCAGTATACCATCAGTGCAAGACG
AAATTGAGTTTTTGTAATTTCTTGTAACAGCCACGTTAAAATATTTGCCT
CATTCATAAGGTAAATAAAAGCTGGAACAAAAACGAAAATAAGGTTCAAA
ACCAATCCGATGTAAAAGGAAATAGAAGCCACAACTTGATCAATATATTG
AGGACACCAGTATCTTTTGCAATACAAAATAGGTGATAGAATGATTATTG
TTAAACAGGTTGACCCAAAGAGTACAAATATAAACTGTAGATGTATATTG
TCATTCGAAATTGCAATACTGTTTTGAAGGGTATATAATATATTCTTTGT
GAATTTCATCAAAACATAACCAATAACTTGAGTTATTAAACCAGCTTCTC
CAAAAGTGAAACTGTTTGGCGAATGTCTCACAATGGTgaaaaataaggca
aaatagactGCAATCGTTGCTAAAATGACAATGAACCATCCAGTTGTTAT
TGTTGGGGATATAATAATGAACACAGTAGCAAATAATAATATAGTCATCA
AAGGTCCAAAGCAAACAAAAAAACCAAATACTGCAAATAATGTTGATGTC
ATGACAGCGTAAAAGTAACCATTGGAGTCTCCTTGCAGATTTTGCAAAGA
ATCTTTGATGCAGAAAAATGTTGGGAAGACAACAATAGGGTAGACAAAAC
CATCATCGCTGAAACAACGAAACAATAATTCCATCTTCGATTGGTAGTTC
CATCTTAAGTTTGATTGACTTCGTCCAAATAGTGTTAAAATAAAAGAGGT
TGTGAGTAAGGTAAGATGATGAAGGGTGAAAGAATGAAATGCCAGCGGTA
AACAGATTAGCAACCATTCAATAAAGCCAAGCATAATCCCTAATTTTACT
TTAACTAGCTAAAAGAACAATAATTCTGTTTCATCTAAATCTGAA Coding sequence (CDS) from alignment at scaffold_472:404492..406336 >TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_472:404492..406336 (Clytia hemisphaerica) TCATTGAAACATTTTACACAATAATAGGGCATAAATCGGtaacaaaaaat tatcaatCTGGTTTGAAATACTCTCCAATAAACTGACACAAACGCAAAAA AATACTAATAAAATTATTTGGTATAAATCtacatgaaattgaaaatagaa tatagAAATCAAACTAAATATCAACATTGAAAGGAAACAACCCAATGTTC CTTTATAGGTTTTACTTCGGTTTGGCCATGTCTGAGTTCCAAAGAGTTTA CCAGTAATAGATGCAAACGTATCACCAACACATAAGGAAACAACCCCAGC GTTGATTGTCAAAAATTGGAATAAAGTAAGGTTTGTCGGATTGTTTAGAT TCTCCTCGGATAAAGCATACCAAAATGGAAAAGATAAACCAGATAACAAA TAAATATGCGTCAAAATCAATGGACCACTGTCCTGTTGTTCTCTGAATGG TTCCAAATATTGTGTCAATATTCTTGCAATTGGTTCAATATTATTCACTC TGACCAATTCGATGAAAATGAAAGCAACAAAAACAAGTGCAGTCACAAGA GCAACAAATTCAACATCTTTGTAGGCGGGTAAAAAGATCAAAAACGCTAT TccatgaaatatttttcgtatAACAGTCTTTTCTATGTGTTTCTCTCCAG ATAAAAACCAACAAGTTACAGCAAAGGATGAAATGGTTAGAATCAGCCAG TATACCATCAGTGCAAGACGAAATTGAGTTTTTGTAATTTCTTGTAACAG CCACGTTAAAATATTTGCCTCATTCATAAGGTAAATAAAAGCTGGAACAA AAACGAAAATAAGGTTCAAAACCAATCCGATGTAAAAGGAAATAGAAGCC ACAACTTGATCAATATATTGAGGACACCAGTATCTTTTGCAATACAAAAT AGGTGATAGAATGATTATTGTTAAACAGGTTGACCCAAAGAGTACAAATA TAAACTGTAGATGTATATTGTCATTCGAAATTGCAATACTGTTTTGAAGG GTATATAATATATTCTTTGTGAATTTCATCAAAACATAACCAATAACTTG AGTTATTAAACCAGCTTCTCCAAAAGTGAAACTGTTTGGCGAATGTCTCA CAATGGTgaaaaataaggcaaaatagactGCAATCGTTGCTAAAATGACA ATGAACCATCCAGTTGTTATTGTTGGGGATATAATAATGAACACAGTAGC AAATAATAATATAGTCATCAAAGGTCCAAAGCAAACAAAAAAACCAAATA CTGCAAATAATGTTGATGTCATGACAGCGTAAAAGTAACCATTGGAGTCT CCTTGCAGATTTTGCAAAGAATCTTTGATGCAGAAAAATGTTGGGAAGAC AACAATAGGGTAGACAAAACCATCATCGCTGAAACAACGAAACAATAATT CCATCTTCGATTGGTAGTTCCATCTTAAGTTTGATTGACTTCGTCCAAAT AGTGTTAAAATAAAAGAGGTTGTGAGTAAGGTAAGATGATGAAGGGTGAA AGAATGAAATGCCAGCGGTAAACAGATTAGCAACCATTCAATAAAGCCAA GCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067717-exon-scaffold_472-1491911889:404492..406336 | TCONS_00067717-exon-scaffold_472-1491911889:404492..406336 | Clytia hemisphaerica | exon |
TCONS_00067717-exon-scaffold_472-1510915933:404492..406336 | TCONS_00067717-exon-scaffold_472-1510915933:404492..406336 | Clytia hemisphaerica | exon |
TCONS_00067717-exon-scaffold_472-1575043694:404492..406336 | TCONS_00067717-exon-scaffold_472-1575043694:404492..406336 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_472 | supercontig | scaffold_472:404492..406336 . |
Blast
BLAST of TCONS_00067717 vs. Swiss-Prot (Human)
Match: DOLK (Dolichol kinase OS=Homo sapiens GN=DOLK PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.850e-21 Identity = 83/235 (35.32%), Postives = 118/235 (50.21%), Query Frame = 2
Query: 887 TQFRLALMVYWLILTISSFAVTCW------FLSGEKHIEKTVIRKIFHGIAFLIFLPAYK-DVEXXXXXXXXXXXXXXXXELVRVNNIEPIARILTQYLEPFREQQDSGPLILTHIYLLSGLSFPFWYALSEEXXXXXXXXXXXXXXXINAGVVSLCVGDTFASITGKLFGTQTWPNRSKTYKGTLGCFLSMLIFSLISIFYFQFHVDL-YQIIXXXXXXXXXXXXESISNQIDN 1567
T R+ L+ YW +L + V + +KH T+ RK FH I ++P D + + + FIF+E VR I+P+ L +L F +++DSGPLILTHIYLL G+S P W L +L + L AGV+++ VGDT ASI G G WP KT++GT+ + +I S+ I F VDL Y ++ VSLLE+ + QIDN
Sbjct: 294 TDTRIYLLAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW--LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSIFAQII-SVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDN 525
The following BLAST results are available for this feature:
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