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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=transcript|length=1845bp
TTCAGATTTAGATGAAACAGAATTATTGTTCTTTTAGCTAGTTAAAGTAA
AATTAGGGATTATGCTTGGCTTTATTGAATGGTTGCTAATCTGTTTACCG
CTGGCATTTCATTCTTTCACCCTTCATCATCTTACCTTACTCACAACCTC
TTTTATTTTAACACTATTTGGACGAAGTCAATCAAACTTAAGATGGAACT
ACCAATCGAAGATGGAATTATTGTTTCGTTGTTTCAGCGATGATGGTTTT
GTCTACCCTATTGTTGTCTTCCCAACATTTTTCTGCATCAAAGATTCTTT
GCAAAATCTGCAAGGAGACTCCAATGGTTACTTTTACGCTGTCATGACAT
CAACATTATTTGCAGTATTTGGTTTTTTTGTTTGCTTTGGACCTTTGATG
ACTATATTATTATTTGCTACTGTGTTCATTATTATATCCCCAACAATAAC
AACTGGATGGTTCATTGTCATTTTAGCAACGATTGCagtctattttgcct
tatttttcACCATTGTGAGACATTCGCCAAACAGTTTCACTTTTGGAGAA
GCTGGTTTAATAACTCAAGTTATTGGTTATGTTTTGATGAAATTCACAAA
GAATATATTATATACCCTTCAAAACAGTATTGCAATTTCGAATGACAATA
TACATCTACAGTTTATATTTGTACTCTTTGGGTCAACCTGTTTAACAATA
ATCATTCTATCACCTATTTTGTATTGCAAAAGATACTGGTGTCCTCAATA
TATTGATCAAGTTGTGGCTTCTATTTCCTTTTACATCGGATTGGTTTTGA
ACCTTATTTTCGTTTTTGTTCCAGCTTTTATTTACCTTATGAATGAGGCA
AATATTTTAACGTGGCTGTTACAAGAAATTACAAAAACTCAATTTCGTCT
TGCACTGATGGTATACTGGCTGATTCTAACCATTTCATCCTTTGCTGTAA
CTTGTTGGTTTTTATCTGGAGAGAAACACATAGAAAAGACTGTTatacga
aaaatatttcatggAATAGCGTTTTTGATCTTTTTACCCGCCTACAAAGA
TGTTGAATTTGTTGCTCTTGTGACTGCACTTGTTTTTGTTGCTTTCATTT
TCATCGAATTGGTCAGAGTGAATAATATTGAACCAATTGCAAGAATATTG
ACACAATATTTGGAACCATTCAGAGAACAACAGGACAGTGGTCCATTGAT
TTTGACGCATATTTATTTGTTATCTGGTTTATCTTTTCCATTTTGGTATG
CTTTATCCGAGGAGAATCTAAACAATCCGACAAACCTTACTTTATTCCAA
TTTTTGACAATCAACGCTGGGGTTGTTTCCTTATGTGTTGGTGATACGTT
TGCATCTATTACTGGTAAACTCTTTGGAACTCAGACATGGCCAAACCGAA
GTAAAACCTATAAAGGAACATTGGGTTGTTTCCTTTCAATGTTGATATTT
AGTTTGATTTctatattctattttcaatttcatgtaGATTTATACCAAAT
AATTTTATTAGTATTTTTTTGCGTTTGTGTCAGTTTATTGGAGAGTATTT
CAAACCAGattgataattttttgttaCCGATTTATGCCCTATTATTGTGT
AAAATGTTTCAATGAAGATTTAATTGTGTCTGATATAGTCTGTTTTGTTG
ctacacacgtttttttatgagaacaaactatattaagaacataaggcttc
gatggccaaaatgttaagagcatgttaagaacattttaaggctccgcgga
ctctaaaacacctgatttcttaagaaaaccgacaaaaatactcaaaaaat
agcgaaaataagaacatgttaagaacctttttacgcttaaaactc Run BLAST on NCBI protein sequence of TCONS_00067717-protein >TCONS_00067717-protein ID=TCONS_00067717-protein|Name=TCONS_00067717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MLGFIEWLLICLPLAFHSFTLHHLTLLTTSFILTLFGRSQSNLRWNYQSK
MELLFRCFSDDGFVYPIVVFPTFFCIKDSLQNLQGDSNGYFYAVMTSTLF
AVFGFFVCFGPLMTILLFATVFIIISPTITTGWFIVILATIAVYFALFFT
IVRHSPNSFTFGEAGLITQVIGYVLMKFTKNILYTLQNSIAISNDNIHLQ
FIFVLFGSTCLTIIILSPILYCKRYWCPQYIDQVVASISFYIGLVLNLIF
VFVPAFIYLMNEANILTWLLQEITKTQFRLALMVYWLILTISSFAVTCWF
LSGEKHIEKTVIRKIFHGIAFLIFLPAYKDVEFVALVTALVFVAFIFIEL
VRVNNIEPIARILTQYLEPFREQQDSGPLILTHIYLLSGLSFPFWYALSE
ENLNNPTNLTLFQFLTINAGVVSLCVGDTFASITGKLFGTQTWPNRSKTY
KGTLGCFLSMLIFSLISIFYFQFHVDLYQIILLVFFCVCVSLLESISNQI
DNFLLPIYALLLCKMFQ Run BLAST on NCBI transcript from alignment at scaffold_472:404492..406336 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=transcript|length=1845bp|location=Sequence derived from alignment at scaffold_472:404492..406336 (Clytia hemisphaerica)
gagttttaagcgtaaaaaggttcttaacatgttcttattttcgctatttt
ttgagtatttttgtcggttttcttaagaaatcaggtgttttagagtccgc
ggagccttaaaatgttcttaacatgctcttaacattttggccatcgaagc
cttatgttcttaatatagtttgttctcataaaaaaacgtgtgtagCAACA
AAACAGACTATATCAGACACAATTAAATCTTCATTGAAACATTTTACACA
ATAATAGGGCATAAATCGGtaacaaaaaattatcaatCTGGTTTGAAATA
CTCTCCAATAAACTGACACAAACGCAAAAAAATACTAATAAAATTATTTG
GTATAAATCtacatgaaattgaaaatagaatatagAAATCAAACTAAATA
TCAACATTGAAAGGAAACAACCCAATGTTCCTTTATAGGTTTTACTTCGG
TTTGGCCATGTCTGAGTTCCAAAGAGTTTACCAGTAATAGATGCAAACGT
ATCACCAACACATAAGGAAACAACCCCAGCGTTGATTGTCAAAAATTGGA
ATAAAGTAAGGTTTGTCGGATTGTTTAGATTCTCCTCGGATAAAGCATAC
CAAAATGGAAAAGATAAACCAGATAACAAATAAATATGCGTCAAAATCAA
TGGACCACTGTCCTGTTGTTCTCTGAATGGTTCCAAATATTGTGTCAATA
TTCTTGCAATTGGTTCAATATTATTCACTCTGACCAATTCGATGAAAATG
AAAGCAACAAAAACAAGTGCAGTCACAAGAGCAACAAATTCAACATCTTT
GTAGGCGGGTAAAAAGATCAAAAACGCTATTccatgaaatatttttcgta
tAACAGTCTTTTCTATGTGTTTCTCTCCAGATAAAAACCAACAAGTTACA
GCAAAGGATGAAATGGTTAGAATCAGCCAGTATACCATCAGTGCAAGACG
AAATTGAGTTTTTGTAATTTCTTGTAACAGCCACGTTAAAATATTTGCCT
CATTCATAAGGTAAATAAAAGCTGGAACAAAAACGAAAATAAGGTTCAAA
ACCAATCCGATGTAAAAGGAAATAGAAGCCACAACTTGATCAATATATTG
AGGACACCAGTATCTTTTGCAATACAAAATAGGTGATAGAATGATTATTG
TTAAACAGGTTGACCCAAAGAGTACAAATATAAACTGTAGATGTATATTG
TCATTCGAAATTGCAATACTGTTTTGAAGGGTATATAATATATTCTTTGT
GAATTTCATCAAAACATAACCAATAACTTGAGTTATTAAACCAGCTTCTC
CAAAAGTGAAACTGTTTGGCGAATGTCTCACAATGGTgaaaaataaggca
aaatagactGCAATCGTTGCTAAAATGACAATGAACCATCCAGTTGTTAT
TGTTGGGGATATAATAATGAACACAGTAGCAAATAATAATATAGTCATCA
AAGGTCCAAAGCAAACAAAAAAACCAAATACTGCAAATAATGTTGATGTC
ATGACAGCGTAAAAGTAACCATTGGAGTCTCCTTGCAGATTTTGCAAAGA
ATCTTTGATGCAGAAAAATGTTGGGAAGACAACAATAGGGTAGACAAAAC
CATCATCGCTGAAACAACGAAACAATAATTCCATCTTCGATTGGTAGTTC
CATCTTAAGTTTGATTGACTTCGTCCAAATAGTGTTAAAATAAAAGAGGT
TGTGAGTAAGGTAAGATGATGAAGGGTGAAAGAATGAAATGCCAGCGGTA
AACAGATTAGCAACCATTCAATAAAGCCAAGCATAATCCCTAATTTTACT
TTAACTAGCTAAAAGAACAATAATTCTGTTTCATCTAAATCTGAA Coding sequence (CDS) from alignment at scaffold_472:404492..406336 >TCONS_00067717 ID=TCONS_00067717|Name=TCONS_00067717|organism=Clytia hemisphaerica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_472:404492..406336 (Clytia hemisphaerica)
TCATTGAAACATTTTACACAATAATAGGGCATAAATCGGtaacaaaaaat
tatcaatCTGGTTTGAAATACTCTCCAATAAACTGACACAAACGCAAAAA
AATACTAATAAAATTATTTGGTATAAATCtacatgaaattgaaaatagaa
tatagAAATCAAACTAAATATCAACATTGAAAGGAAACAACCCAATGTTC
CTTTATAGGTTTTACTTCGGTTTGGCCATGTCTGAGTTCCAAAGAGTTTA
CCAGTAATAGATGCAAACGTATCACCAACACATAAGGAAACAACCCCAGC
GTTGATTGTCAAAAATTGGAATAAAGTAAGGTTTGTCGGATTGTTTAGAT
TCTCCTCGGATAAAGCATACCAAAATGGAAAAGATAAACCAGATAACAAA
TAAATATGCGTCAAAATCAATGGACCACTGTCCTGTTGTTCTCTGAATGG
TTCCAAATATTGTGTCAATATTCTTGCAATTGGTTCAATATTATTCACTC
TGACCAATTCGATGAAAATGAAAGCAACAAAAACAAGTGCAGTCACAAGA
GCAACAAATTCAACATCTTTGTAGGCGGGTAAAAAGATCAAAAACGCTAT
TccatgaaatatttttcgtatAACAGTCTTTTCTATGTGTTTCTCTCCAG
ATAAAAACCAACAAGTTACAGCAAAGGATGAAATGGTTAGAATCAGCCAG
TATACCATCAGTGCAAGACGAAATTGAGTTTTTGTAATTTCTTGTAACAG
CCACGTTAAAATATTTGCCTCATTCATAAGGTAAATAAAAGCTGGAACAA
AAACGAAAATAAGGTTCAAAACCAATCCGATGTAAAAGGAAATAGAAGCC
ACAACTTGATCAATATATTGAGGACACCAGTATCTTTTGCAATACAAAAT
AGGTGATAGAATGATTATTGTTAAACAGGTTGACCCAAAGAGTACAAATA
TAAACTGTAGATGTATATTGTCATTCGAAATTGCAATACTGTTTTGAAGG
GTATATAATATATTCTTTGTGAATTTCATCAAAACATAACCAATAACTTG
AGTTATTAAACCAGCTTCTCCAAAAGTGAAACTGTTTGGCGAATGTCTCA
CAATGGTgaaaaataaggcaaaatagactGCAATCGTTGCTAAAATGACA
ATGAACCATCCAGTTGTTATTGTTGGGGATATAATAATGAACACAGTAGC
AAATAATAATATAGTCATCAAAGGTCCAAAGCAAACAAAAAAACCAAATA
CTGCAAATAATGTTGATGTCATGACAGCGTAAAAGTAACCATTGGAGTCT
CCTTGCAGATTTTGCAAAGAATCTTTGATGCAGAAAAATGTTGGGAAGAC
AACAATAGGGTAGACAAAACCATCATCGCTGAAACAACGAAACAATAATT
CCATCTTCGATTGGTAGTTCCATCTTAAGTTTGATTGACTTCGTCCAAAT
AGTGTTAAAATAAAAGAGGTTGTGAGTAAGGTAAGATGATGAAGGGTGAA
AGAATGAAATGCCAGCGGTAAACAGATTAGCAACCATTCAATAAAGCCAA
GCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067717-exon-scaffold_472-1491911889:404492..406336 | TCONS_00067717-exon-scaffold_472-1491911889:404492..406336 | Clytia hemisphaerica | exon |
| TCONS_00067717-exon-scaffold_472-1510915933:404492..406336 | TCONS_00067717-exon-scaffold_472-1510915933:404492..406336 | Clytia hemisphaerica | exon |
| TCONS_00067717-exon-scaffold_472-1575043694:404492..406336 | TCONS_00067717-exon-scaffold_472-1575043694:404492..406336 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:404492..406336 . |
Blast
BLAST of TCONS_00067717 vs. Swiss-Prot (Human)
Match: DOLK (Dolichol kinase OS=Homo sapiens GN=DOLK PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.850e-21 Identity = 83/235 (35.32%), Postives = 118/235 (50.21%), Query Frame = 2
Query: 887 TQFRLALMVYWLILTISSFAVTCW------FLSGEKHIEKTVIRKIFHGIAFLIFLPAYK-DVEXXXXXXXXXXXXXXXXELVRVNNIEPIARILTQYLEPFREQQDSGPLILTHIYLLSGLSFPFWYALSEEXXXXXXXXXXXXXXXINAGVVSLCVGDTFASITGKLFGTQTWPNRSKTYKGTLGCFLSMLIFSLISIFYFQFHVDL-YQIIXXXXXXXXXXXXESISNQIDN 1567
T R+ L+ YW +L + V + +KH T+ RK FH I ++P D + + + FIF+E VR I+P+ L +L F +++DSGPLILTHIYLL G+S P W L +L + L AGV+++ VGDT ASI G G WP KT++GT+ + +I S+ I F VDL Y ++ VSLLE+ + QIDN
Sbjct: 294 TDTRIYLLAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDRPLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMSLPIW--LIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSIFAQII-SVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDN 525
The following BLAST results are available for this feature:
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