TCONS_00067704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067704
Unique NameTCONS_00067704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067704 ID=TCONS_00067704|Name=TCONS_00067704|organism=Clytia hemisphaerica|type=transcript|length=821bp
taattttcaatatttctctttctttttgctTATTATAtataatgtacaaa
aaaattaattacaaatatatttactgaaaataaaacttcaaccaggccat
attttagaaaggcaaggcagcgtccgttggtggccaaaaagggcactttt
atacttatgtttttccactaaaaaggctgtttttatcaaaattttagtaa
tttcaagaggggcagcgtccgataaccAGAAAAATGGCCTGTCAACAAAA
TGAGGTTTGATTTAAGGATCCAGCCCTCATGGTTACGGAAATCGATATCT
TAAAGAAAGATTCATCAAagcattttttttgaaacaaacaAATTTTGTAG
AAAGTCTAGATATGCATTTACAAAGCCATCATCCAATCAAACACATATAC
ATTGTGCCTGAAAAGTGTGAAAAATACGCAAAGAACtgcaaagaaaaaca
ttcttCTCAAAAATCTGAGCATCTTCCTTTCCTTTCCCAGTCACCATACC
GTGTTGGTTCAGGACCAAGAGGACCACCTATTTCGCCAGTTTCAGGGTTT
GTTGCATCTGGGAAGGGTGCATAAGGATCTGGTTCCTGCTTTTCACTCTC
TGAGGAAGTCGTTGGTTTTTGTTCATTTGTTGCTTTTGCGGCTTCACTAA
ATTTACCCAATGGTGTTTTCTCTTCCAGGATTTTGTCAGATACTGACAGT
CTTGTATTTGTATACAATAATGCTGTTAAAATTTGCCTTGGTTGCTTTAC
AAGGTTACTCACAATTGAATTATTCCTCAGTAATGATGTCATAGTTTTTG
ACTGTATTTATAATTCTAAAT
Run BLAST on NCBI

protein sequence of TCONS_00067704-protein

>TCONS_00067704-protein ID=TCONS_00067704-protein|Name=TCONS_00067704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MTSLLRNNSIVSNLVKQPRQILTALLYTNTRLSVSDKILEEKTPLGKFSE
AAKATNEQKPTTSSESEKQEPDPYAPFPDATNPETGEIGGPLGPEPTRYG
DWERKGRCSDF
Run BLAST on NCBI

transcript from alignment at scaffold_472:90603..91423

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067704 ID=TCONS_00067704|Name=TCONS_00067704|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at scaffold_472:90603..91423 (Clytia hemisphaerica)
ATTTAGAATTATAAATACAGTCAAAAACTATGACATCATTACTGAGGAAT
AATTCAATTGTGAGTAACCTTGTAAAGCAACCAAGGCAAATTTTAACAGC
ATTATTGTATACAAATACAAGACTGTCAGTATCTGACAAAATCCTGGAAG
AGAAAACACCATTGGGTAAATTTAGTGAAGCCGCAAAAGCAACAAATGAA
CAAAAACCAACGACTTCCTCAGAGAGTGAAAAGCAGGAACCAGATCCTTA
TGCACCCTTCCCAGATGCAACAAACCCTGAAACTGGCGAAATAGGTGGTC
CTCTTGGTCCTGAACCAACACGGTATGGTGACTGGGAAAGGAAAGGAAGA
TGCTCAGATTTTTGAGaagaatgtttttctttgcaGTTCTTTGCGTATTT
TTCACACTTTTCAGGCACAATGTATATGTGTTTGATTGGATGATGGCTTT
GTAAATGCATATCTAGACTTTCTACAAAATTtgtttgtttcaaaaaaaat
gctTTGATGAATCTTTCTTTAAGATATCGATTTCCGTAACCATGAGGGCT
GGATCCTTAAATCAAACCTCATTTTGTTGACAGGCCATTTTTCTggttat
cggacgctgcccctcttgaaattactaaaattttgataaaaacagccttt
ttagtggaaaaacataagtataaaagtgccctttttggccaccaacggac
gctgccttgcctttctaaaatatggcctggttgaagttttattttcagta
aatatatttgtaattaatttttttgtacattataTATAATAagcaaaaag
aaagagaaatattgaaaatta

Coding sequence (CDS) from alignment at scaffold_472:90603..91423

>TCONS_00067704 ID=TCONS_00067704|Name=TCONS_00067704|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_472:90603..91423 (Clytia hemisphaerica)
ATGACATCATTACTGAGGAATAATTCAATTGTGAGTAACCTTGTAAAGCA
ACCAAGGCAAATTTTAACAGCATTATTGTATACAAATACAAGACTGTCAG
TATCTGACAAAATCCTGGAAGAGAAAACACCATTGGGTAAATTTAGTGAA
GCCGCAAAAGCAACAAATGAACAAAAACCAACGACTTCCTCAGAGAGTGA
AAAGCAGGAACCAGATCCTTATGCACCCTTCCCAGATGCAACAAACCCTG
AAACTGGCGAAATAGGTGGTCCTCTTGGTCCTGAACCAACACGGTATGGT
GACTGGGAAAGGAAAGGAAGATGCTCAGATTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042269XLOC_042269Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067704-proteinTCONS_00067704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067704-exon-scaffold_472-1491911889:90603..91423TCONS_00067704-exon-scaffold_472-1491911889:90603..91423Clytia hemisphaericaexon
TCONS_00067704-exon-scaffold_472-1510915933:90603..91423TCONS_00067704-exon-scaffold_472-1510915933:90603..91423Clytia hemisphaericaexon
TCONS_00067704-exon-scaffold_472-1575043694:90603..91423TCONS_00067704-exon-scaffold_472-1575043694:90603..91423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:90603..91423 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
160.264	159.499	119.632	104.961	29.041	20.1989	29.8865	26.7572	34.015	26.675	28.8898	26.6333	25.5546	23.0898	19.1383	20.6428	53.0776	48.3509	21.2842	24.4917	51.2746	49.2702	77.1687	68.3985	39.4602	39.7722	39.319	30.165	39.8101	37.8251
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012875DUF1674
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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