TCONS_00067704-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067704-protein
Unique Name	TCONS_00067704-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	111

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067704-protein ID=TCONS_00067704-protein|Name=TCONS_00067704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MTSLLRNNSIVSNLVKQPRQILTALLYTNTRLSVSDKILEEKTPLGKFSE
AAKATNEQKPTTSSESEKQEPDPYAPFPDATNPETGEIGGPLGPEPTRYG
DWERKGRCSDF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042269	XLOC_042269	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067704	TCONS_00067704	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012875	DUF1674

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012875	Protein of unknown function DUF1674	PFAM	PF07896	DUF1674	coord: 68..111 e-value: 1.7E-19 score: 70.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..111

Blast

[Close]

BLAST of TCONS_00067704-protein vs. Swiss-Prot (Human)
Match: SDHF4 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens GN=SDHAF4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.492e-16
Identity = 31/47 (65.96%), Postives = 32/47 (68.09%), Query Frame = 0

Query:   65 ESEKQEPDPYAPFPDATNPETGEIGGPLGPEPTRYGDWERKGRCSDF 111
            E    E +P   FPD  NP T E GGP GPEPTRYGDWERKGRC DF
Sbjct:   62 EDSHLEKEPLEKFPDDVNPVTKEKGGPRGPEPTRYGDWERKGRCIDF 108

The following BLAST results are available for this feature:

BLAST of TCONS_00067704-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067704-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SDHF4	4.492e-16	65.96	Succinate dehydrogenase assembly factor 4, mitocho...	[more]

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TCONS_00067704-protein (polypeptide) - C. hemisphaerica