TCONS_00067629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067629
Unique NameTCONS_00067629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1081

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067629 ID=TCONS_00067629|Name=TCONS_00067629|organism=Clytia hemisphaerica|type=transcript|length=1081bp
agcaaccctgaccctacctaactgttagttaatcaattccaaacaacaaa
acccccggaaaatttaaaatgtcggaatgagcaatagacaaccttctttt
gagaccttgtaattatccttttccCAGATGCACGTATGCAATTATCCTTT
TCCCAGATGCACGTATGCAAAAATTTTGTGCAttctatttcaattttgat
gattGAAATATGACCAATGTAATCCAACTACCAGaaaaattagaattcAG
TACCAAAAATGTTTACTCTGCTTCGTGGATTATGGAAATATCTTTTCCAA
AAAGATGAGTATTGTATTCTCATAGTTGGCCTAGATAATGCtggaaaaac
aacatttttagaaCAGACAAAACGTAAATATGCAACCAAAGCCTACAATG
GGAtaccttttgaaaaaattgggCCCACTGTGGGTATGAACATTGGGAAA
ATAGACTTGAAGAGTGATGTACTGTTACTATGGGATCTTGGTGGACAAGA
GGAACTACAATCACTTtgggataaatattttttagactGCAATGGTGTTA
TATATGTTATAGACTCGTCAGATTCTCCACGTTTGGGTGAGTCTTATGAA
TGTTTTCGGAACCTGCTGACACACTCTGATTTAGAAGGGATACCGCTGTT
AGTGCTAGCTAACAAACAAGACAAACCCAGTTGTATTACTGTTGACGAAG
TCAAAGAGGTATTTAATAAGAGTGCAGCTTTCCTTGGTAAACGTGACTGT
ATGCTACATGGTATTTCAGCTCTGGATGGCACTGGAGTTGATGATGGCTT
ACAATGGATGCTAGAACATGTGAAAAGGAACTATAATAGACCACCTAGAG
AAAAAGATATAAGGTGAAATGTGATTTctgttcatatttttattttaaat
gacGAATAAAGCAAGCTTAGCAATATTTCTCTATGGATTAAATAGATAGA
ATCGGTTTCTCAGAATACTCAATTTGTCATGCTATTTCCTTAGCTCCTTC
AGAAAATGAtcctttttctgaaaactagccatgaaaaaaaaattggtgtg
ATAACTAAATAATATCTTCTCAAAAACCTCA
Run BLAST on NCBI

protein sequence of TCONS_00067629-protein

>TCONS_00067629-protein ID=TCONS_00067629-protein|Name=TCONS_00067629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MFTLLRGLWKYLFQKDEYCILIVGLDNAGKTTFLEQTKRKYATKAYNGIP
FEKIGPTVGMNIGKIDLKSDVLLLWDLGGQEELQSLWDKYFLDCNGVIYV
IDSSDSPRLGESYECFRNLLTHSDLEGIPLLVLANKQDKPSCITVDEVKE
VFNKSAAFLGKRDCMLHGISALDGTGVDDGLQWMLEHVKRNYNRPPREKD
IR
Run BLAST on NCBI

transcript from alignment at scaffold_472:3081..14096+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067629 ID=TCONS_00067629|Name=TCONS_00067629|organism=Clytia hemisphaerica|type=transcript|length=11016bp|location=Sequence derived from alignment at scaffold_472:3081..14096+ (Clytia hemisphaerica)
agcaaccctgaccctacctaactgttagttaatcaattccaaacaacaaa
acccccggaaaatttaaaatgtcggaatgagcaatagacaaccttctttt
gagaccttgtaattatccttttccCAGATGCACGTATGCAATTATCCTTT
TCCCAGATGCACGTATGCAAAAATTTTGTGCAttctatttcaattttgat
gattGAAATATGACCAATGTAATCCAACTACCAGGTAAAATATGTGTTGT
TTTGGGTCTTTTAATTTCTGTCAATTCTCTTCGCTACCACTTTTTTGTGA
AACTAACTaaactattttttgtagctCTCTGTCtgcttttttttgtttct
agcCAGTCTGGTCTTTAGATTTGGTTTGGCACTGCAGGGAGacatattta
gatttttcagtttttgaaggATCAAATCTCAATCAAATATTACTGCAATT
TCAAGATTCGGTTGATAAGAATTGCGTTTGATTGTATGAATTAGCAACAT
GCAGTCAAACACATAccttgacagttacatcaatatgccttcttacctgt
ctttaaaaatataaataaaagtaatcacggaaaaggacgcgtaaataaaa
gacataagtgtgagaacagagtaatcaaactcgttagaaaaagtaccatt
agaagtcataaaaaatagacctgaataaatgcaatcgaaatcccagagNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGAAGATGTTTTCAAA
AGGTTGATCGTCTGTGGTGTGGTGGTGTTTGTACAGTGTGGATTTGTTGC
TGTAGAGCCTGTAAtggaaaaataatgaataatgaaaaatgaaaatatgc
cGCATCTAGTTTCAGGGATGCTGGTGACGCTAAACTGGTATGTTAATTCC
CTCGGCCTTGACctccggattgttcatcgcataatttctacgggaaatcg
aaagtaatttcattcggcttgtgatgtttgagagcttggatgttgggaag
ctgcaagaataaagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNgattgcgttcgacaatcgaattt
caatcggtcgattgcgtttgatttggttcgattggttcgatcgtcgattc
cgttcgattgagatcgtctggacatgtatagccctcaaatgaaaggcccg
gctggtcattaaaatacgaaaataaatcgaaacaaaaatggtagagtaga
gctgcgaGCGGAGCTGCGtatgtgtattttaatgaccagccaggtcattc
atttgagggctacgcatgttagcctccactgatgcaagttaccctttctc
aCGGTACATATATACACGGGACATGAgtcaggaccctgccgacgcaccgg
actgtccggtgacaaaaagtatcctttcgcttcACCGGGCGGGGGGGGCA
ATTAGTccagtgtcagtccggtgttgcatacatgGAATTTTGCACGCCGG
acacatttatgaaacaaaaaattaagaaacaccagACGcaccggtgggaa
aaaatatccttttcaacaccggacatccgacttccttaactcgggtgtag
aaattgtccggtggtaaaaaaaattctcattttacaccggactttcgcat
gtacggtgttcgttaagtccggtgtgtcggcagggtcctcatgAGTCTTG
GTGGTGAGTCCAGAAGTTACTTCGATAAAATCAATTATCGATTATTAAAA
TCGATAGCTATTATCGATTATTAAAATCGATAGCTATCGAAAATTAATCC
ATTGATtagtatcgattaaaaacaaTAATCAATAATTAATTGGCGcctaa
aaaattgtgagtatcgaTTATATTGATCAGATATAAGATATCGATTATCA
TTAGCAATCGTCGATAGGGTTGAGGTATCAATTATATTGATATTACccta
agttggtctaatatcaacatccctcttctagttctgacacccttctttag
agaaaggaataatatgaaagcttgaatcactgattgaaaaaggattattc
ttcTCTGACCACTCCAAAAGCAGGGTACttacccatagccgggtggtggt
tttctatttttacatttcaaaaaagttagtacccggtactactttagggg
tgggggtgtgtatttttcactcttctAGCAAGTACAGGgtactatttggg
tactttttcacagagttttgctcctttttcaataaaaaaagtagtttttt
ctaatattttgacttttttcaaatattatttttttgatttgaattttttt
ttaattgagaaactttttttaactcttttgagaaattctttgatttttgt
gaagacaaaacttccgaaatggtcaagaagtgtgttattaaaatcaaagg
acaaaagccTCTGACTGAATCAATGATAGTTTGtttgaattatctgtcaa
tttcagtcagaaaaactaACATAGTACCCTCTCTTttggtctaatctgta
aaatataagattttagggggtggtgtctctattttttacagcaaaaatga
agtagtacccgaactaaatatgggtgggtggtacaaaaaagaaattgagt
gaaaaatcaagttagtaccctatgggtgagtaccctgcctctgtaccccc
ccccccaggacagtgctgcaaatagggcaatttcagttggccggtaattt
tttgAGTGTAACGGGTCTGGCGGAACCATCTTTGTAGTCTGTTATTACAG
ATTGACTTAAAAACTGTTCCTCTTTTAATTAGAAGCGCTATTAAGTATTA
ATCTAGGCctctaatcttcaaattttaaccggataaaatgaaaaattgag
cttcagaatggccggtagaaactacgaaataaccagtaattaccggtcac
cggccgttatttgcagcactgctgGACCACTAACaactaaacaaagaaaa
acagcctttcttttctatttcttttaacctttctataaatttcagctgat
aaaaaggatGTCTGAATTGgtggaggggtgtcgacattagaccaagttaa
gGTAATCGATATTATCAGTTATTAACACTGTAATTGATAATATctgttaa
aaatctatggtgATAATTTTAATTGAGTGCTAAAATATTGTGAgtatcga
ttagctatcgattatcatttttaatcaatattttaaaaatcaatggaATA
ATTATCGATTAGCTATCAATTTTAATTGATAATCGATTAACGTCTTGGTG
AGTGtatactgtatgtGTTTGATTGTGTTTAACTATATTGAATTTGGCTT
ACAACTTTAATATTTGGCAAGAATGTAGAAATTTCCTTCCGAAATGCTAA
AGCTCTTAAGATCTGTCAAATTATCAAATTCCTGAAAGGTTTGGATTACA
GAATTCTGCGTTACTGCGTCACAGACAGAGCTTTACAGTTGCGATCTGTA
ACCACAAGTGTTACGcataagccaaatcgcgtattacgaacaacctctaa
attgttgagtacaggagaaaaaaaatcgaaattcaaaatggcggccaagc
ccacgttgataactatcaaaaatcttcgtttttcaatcagctaattgcag
ctcaataaattaatgaaataatttgaaataaaaagtaaacaaaccttgaa
cctttcatgaatccaaataaacaaaagtattcatctaaagtgaagattac
atttcaaaataaaacgatttccaaaccaacctaaagtcagtgtttgccaa
ctaaaaatttctctgcgcggtcactggcaaggagttacgacttcagactt
tagattccaattcttgtataggctgcaactacactctGCCAAATGGTCTG
TATTTAAaaatacttccaaatgggtccataagttaagaaaatgaaattat
catctagcacgggggttttgtttttaaaaacaaactgcaaaataaaattg
ttaatgaacttgttacttaaaatatcacttacttacataatttatttatg
atataacagcCCTTTCTtgaataaatggcctcttaaagtctttaatgttt
gccgcaagaaaggagaaaaatttaatttgacccccagttttttctctctt
tttctagctatTTCCCGCATGTTAGTGTATACctgtgtagacacaacttt
aatccggggaaataaagcgttttcattggtctaaaatcacggatggtcac
gtgaccagaatttttatccagggaaatgccgtggcggcaatgttttgctt
tagtgagattgaccattttgttgttttgatttgagcgggcgaaatttctg
tacaaaccaaaatattgcttagttgaaacacttgtgtaaCCCGACCCTTG
TTTTAGAGTAGTTGACCCTGACaggcagtatagacctaactcctCATAGt
catacaaaaattatgggaaacgcatatttggacagtatagacttaaaaaA
CTTGtttatcaagattacgggatttcgagtacgatccaattttactttcg
ttttgagtgttttcattttcgatttcaagccaacatcttagcaacggggt
gctcgcccatagttacaggggtttgttcaaaaaaaactaaacgtagaaaa
ttttccaaatcccccattttgaTTAAGGCAAtggaaaatgaaacttttct
atgtttcacttttttgcacctattcttcaaaattagaatatttaagattt
taagttcttcctttattcgatgattttttacggcactttgttgacaatct
aactctcgcatcaaattcccactttcttcagtaaattgaagatgagaaaa
aaactaaactacggatcacggattgaaacaaatatatgaagggtgggatt
ttacagccgcccgtcgtgcaaggcactgaaaggccacaggtgccaaaaaa
gaagggccgtttgaaatgcggcaacctcattaGTGGAAATTTGATAAGCA
GCTGCGAAGGAGCcgtgggaagcaatcagtagaatagaccactttcgttt
ttgttgcagattttgatataaatttctctcagagattacttgtcaatgta
catgtacacatgtgttgtgtcaacttatcaacattgtattgttgtaaaca
gtaaagggaaagataaaagaggtaagactagcctagtttctaatcttgat
ataggagtttaagcttagactgttggactttgtaccctatgctgcacgca
agcacttaagctaaagtcctgcaaaagcaggacaaaaatcagttttttga
aatgaagtttgcaaaaaaacgccacatagaagatctttcaaattcagtat
gtgaatagagccagtaatttttggtttgattattaatgattttcttttct
attatatttataatacacctcaaaaaaaaatcatttttcttgtttatttt
CCATTCACACaataaaatatttatatatctttttaattaaaatacAGACA
GGTCCCATTAGGATTCCACTTATGTCAACTTTACTTTAAATAAAAACCTT
CACTTTTATTACAATCACTATAGCCACAACAAATACTTTTTAACTAAACA
AACAGATCCATGTCAGTTAGTAACAACAAcctatttttaaacttttaaac
agTTGAGAGAGAGCCTGGTTAGGCTCCTCATATTATCCCACTATACACAC
GCACCGCACATATATTACGTTTTAGTAGTACAaaccaaagtattttttta
aaccttatgttatctttttataATAGCCAATAATCTTTTAgtttaaatta
tttatttttatatccaAGCTCTCTTCACAATCTCATACGTACCTCTCtaa
tatttttagataaaacttttttttacatgCTTAGCACTTTTGTTGCTTTA
TactaattcttcttttttttaagcataaaattttttaattctcagTAAGC
TGAATGCAGAAGCCAAGTTGTTAGTAACAAAATCTGTAATGGGCAAAGGT
GGTCTAACAGATCACAACGCCCCCCCCTCTAAAATGGTAGACATAGCTGT
ggcagatcatttcgatggaagttgttggaatgtttacaaggctcttgaca
gaatatcgtttgtttaattgtcaatgatgacagtgccaattattaatttt
gttagatctgacaaatttatgtttgtaagtgcactttatagttttgattc
ccattgaaaacccatattctggttttcatgttattagatgctgttttaga
gctttagagctagcctgtcaAAAGACTTGCAAAGTAAAATTGATATGTAA
GCAAACAATAACacccttatttaaaaacaaaacttttaattttggaCAAG
CCAAATTTTAGAAATGCAGGGCAGCGCCCTATAGCTAGTGAccaaaaagg
aaactttttctttaaataaatcaatccttCCATATCTTCAGTAAAAGATT
AAATAACAGAAGCTGCTTTTggttcaattttgaaatttaattttctaaaC
GTTTCGGCCTCAACAGAGTACCATCATCagtaaaaaattttgttgtaaTG
AAAATTAGCTATCCATAAAATGTACAAGTTTAAAGAAATTCGAAATAAAA
GTGGCTAATTACATCATCAAACCTAAATCAAAAGAATATGattatgattc
ttcaatgggaatcaaaactataaagtgcacttacaaacatcattatgtca
gatctaacaaaattaatagcggcactgtcatcattgacaataaaacaaag
gattttctgtcaagagccttgtaaacattccaacaacttccatcaaaatg
atctatgATCTGCCATAGCTAAGTCAACCATTTTAGCGCAGCccaaggat
tgagccgagaacgcttgcAGAATGCCCGTAGAACGCCCACAAGCCCCTGc
acgggtgaaaaactttaatctgtcaataattttctcaagcaaagcatgag
cgaagcgattctagctttacaatagtgccgcggatcatcagtggatattc
aattatcattattccattattttcattcctagaacttttgcaaaaaaaaa
ggaaaaatagaaaattgtattttactgctctattcacatactgaatttga
tcTTCTatatgtggcatttttttgaaaactaagTACCCACAAAATTAAGT
ACCCGCAAAATTTTGTAACCCGCAGAATTTTGTACCAATTGTAAGGTAAA
GTAttgtttgtgattgatgttgcagagtgctcaatgaaaccagagccaag
taaaatattaaaagatatcacaaaaaaaaaaaataaaaaaaaaaataaaa
tgtagaTTTTTGGTTTGATGTCTGCTGAAATTTATTCAGTGTGTTTACGG
CCAGACAGAAAACTTTGGAAATGGATAGTCTATAAATATATCAATATATA
TTAATCAAacggccaaatccgccaaactttcttcctgccaaaatttcttc
ctttaatgtcgAAGAGTTTTTGCCACCAAATGATGGTggtaaaaaattct
tgaaaatgccTCTGTATATAGCTTAGTTGCAAACAAACTCGGTAAAAACA
TGCTTGCCTTTGCCAAAGACTTTTAGTATTCCAAAGAGTAAAGGCAATGA
TAATACTTTGTTATCAAAGCCAAAAATCAGGCCAACACACAGAAAGTTTG
TGcacaattttttgtaaaaaaatcccttatgaaacaaaggaaaataaTCA
CAGCCAATCAGccattttgaaggaaaacaaaaacagtgaaatttcatttg
tcatGATCCCTGTTGCAGTAATGTTGTCTTATCTGTGTTGTTAGATACTG
AGTTTATGGAAACAAAAATGCCACTGTATAATCAACTGAAAATAATACAA
CATTATTCCCAAGAgcaattaaaaatgacaaactttttctcattgttgtt
ttgattgacagagaAAATACtagaatctgattggatgaaattTGTTCTCT
ATAAGTGTTGTAAAAACCTAAAACTCTGGCTATAAAACCCAATGTCAAGG
tgtaaaattaaaaacaacGAAACACAAAAGCATTAGTAAATGTAAGCTTG
GAcaaatttgtgtgttttgtttGATATAAATAAACTCTTGTGTTCTTTTA
AGGCCACTTGACCGCTGACAATTAGGCTAGGCTAgacatagtgcggaaag
gggtctgaattcccccccttcttggcatccccccaacctttaaaaatgcc
ccaagggttttgggctaaattttttatggtaaaaagggaaaggaaacagt
aaagaaaaattaagtctggcaaatataataccactttttagtgaaaataa
agaacttcctttcatgcagaccaaatttcataacagtgctggaaaatNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggg
gggtccgaactatGGCTAGACTTACCTCTTTTCTATTTGATCTTTGATTG
GTTTCTATTGTTGATTGCTTGTGTCATCAATGACTCACAACACAAGTTTT
TCACTTGAAATGGAAACACACAATTTGTCAAAGCTGACTGTGTGTACTGA
ATATTTTCTCTCATCACTATTTGGATGCAGGAGTCAGTGAGGTTTTTAAT
TGACATTGTGTCCTACAAAAGTTAGGACAGTCCAGTTTTTTGAAGCTGTT
GCTTTAAGATCTGCTTAATGAAAATACTGACATCTGATTCGCCATGTGCA
AATCCCCTCGCCTCCCAAATTTTAAGTTGTCTCGGAGATTCCTTTACAAA
TAAAGATCAGGGCATTTTTTCAGGCTCCTACCAATCAGGCTGAGGACCCA
AGAAATTGTAGCCATTGCAACATTAAATTGGGCCAAATGGGACAAATATC
CTTATTAAAAgaatcaaaacatgaaaaataggaTACTCGTCAGAAAGTTT
TGAGATGTGTTTACGCTGAATCCATTGGtagcctcagatatttgattttt
cgaaaaaaccgtgagtaaagggggacccttgataagctctatcgattaac
taaaaatcgattcactcgaaaactgcaggagattcgaagggcaatttttt
ttgtcaattctacaccctattagaagcaaaatatcaaaaatttgccctga
ttttaggggtgccctacgaaaaccatttttaaggcccTTTCTGAATCTCT
GACGCTGGTCTATAcaggttattttttcaattgattAAAATCATAATATA
AATGTTATGATTTAGCAAGTTTAAGTACTTTATTATATATATACTTTATa
tattaaaatgtcattttagaaaaattagaattcAGTACCAAAAATGTTTA
CTCTGCTTCGTGGATTATGGAAATATCTTTTCCAAAAAGATGAGTATTGT
ATTCTCATAGTTGGCCTAGATAATGCtggaaaaacaacatttttagaaCA
GACAAAACGTAAATATGCAACCAAAGCCTACAATGGGAtaccttttgaaa
aaattgggCCCACTGTGGGTATGAACATTGGGAAAATAGACTTGAAGAGT
GATGTACTGTTACTATGGGATCTTGGTGGACAAGAGGAACTACAATCACT
TtgggataaatattttttagactGCAATGGTGTTATATATGTTATAGACT
CGTCAGATTCTCCACGTTTGGGTGAGTCTTATGAATGTTTTCGGAACCTG
CTGACACACTCTGATTTAGAAGGGATACCGCTGTTAGTGCTAGCTAACAA
ACAAGACAAACCCAGTTGTATTACTGTTGACGAAGTCAAAGAGGTATTTA
ATAAGAGTGCAGCTTTCCTTGGTAAACGTGACTGTATGCTACATGGTATT
TCAGCTCTGGATGGCACTGGAGTTGATGATGGCTTACAATGGATGCTAGA
ACATGTGAAAAGGAACTATAATAGACCACCTAGAGAAAAAGATATAAGGT
GAAATGTGATTTctgttcatatttttattttaaatgacGAATAAAGCAAG
CTTAGCAATATTTCTCTATGGATTAAATAGATAGAATCGGTTTCTCAGAA
TACTCAATTTGTCATGCTATTTCCTTAGCTCCTTCAGAAAATGAtccttt
ttctgaaaactagccatgaaaaaaaaattggtgtgATAACTAAATAATAT
CTTCTCAAAAACCTCA

Coding sequence (CDS) from alignment at scaffold_472:3081..14096+

>TCONS_00067629 ID=TCONS_00067629|Name=TCONS_00067629|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_472:3081..14096+ (Clytia hemisphaerica)
ATGTTTACTCTGCTTCGTGGATTATGGAAATATCTTTTCCAAAAAGATGA
GTATTGTATTCTCATAGTTGGCCTAGATAATGCtggaaaaacaacatttt
tagaaCAGACAAAACGTAAATATGCAACCAAAGCCTACAATGGGAtacct
tttgaaaaaattgggCCCACTGTGGGTATGAACATTGGGAAAATAGACTT
GAAGAGTGATGTACTGTTACTATGGGATCTTGGTGGACAAGAGGAACTAC
AATCACTTtgggataaatattttttagactGCAATGGTGTTATATATGTT
ATAGACTCGTCAGATTCTCCACGTTTGGGTGAGTCTTATGAATGTTTTCG
GAACCTGCTGACACACTCTGATTTAGAAGGGATACCGCTGTTAGTGCTAG
CTAACAAACAAGACAAACCCAGTTGTATTACTGTTGACGAAGTCAAAGAG
GTATTTAATAAGAGTGCAGCTTTCCTTGGTAAACGTGACTGTATGCTACA
TGGTATTTCAGCTCTGGATGGCACTGGAGTTGATGATGGCTTACAATGGA
TGCTAGAACATGTGAAAAGGAACTATAATAGACCACCTAGAGAAAAAGAT
ATAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042238XLOC_042238Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067629-proteinTCONS_00067629-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067629-exon-scaffold_472-1491911889:3081..3314TCONS_00067629-exon-scaffold_472-1491911889:3081..3314Clytia hemisphaericaexon
TCONS_00067629-exon-scaffold_472-1510915933:3081..3314TCONS_00067629-exon-scaffold_472-1510915933:3081..3314Clytia hemisphaericaexon
TCONS_00067629-exon-scaffold_472-1575043694:3081..3314TCONS_00067629-exon-scaffold_472-1575043694:3081..3314Clytia hemisphaericaexon
TCONS_00067629-exon-scaffold_472-1491911889:13250..14096TCONS_00067629-exon-scaffold_472-1491911889:13250..14096Clytia hemisphaericaexon
TCONS_00067629-exon-scaffold_472-1510915933:13250..14096TCONS_00067629-exon-scaffold_472-1510915933:13250..14096Clytia hemisphaericaexon
TCONS_00067629-exon-scaffold_472-1575043694:13250..14096TCONS_00067629-exon-scaffold_472-1575043694:13250..14096Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:3081..14096 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.1184	38.919	11.4531	6.6131	20.5536	16.4604	14.3273	14.7214	8.85758	8.55694	6.88503	3.92807	4.28484	3.97847	5.10112	4.95643	9.96567	7.00953	3.86291	3.99376	7.03557	5.72893	43.808	40.625	6.48168	7.92486	5.6291	5.29068	18.5711	22.8594
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR006689Small_GTPase_ARF/SAR
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00067629 vs. Swiss-Prot (Human)
Match: ARFRP (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 3.308e-81
Identity = 113/201 (56.22%), Postives = 153/201 (76.12%), Query Frame = 1 
Query:  259 MFTLLRGLWKYLFQKDEYCILIVGLDNAGKTTFLEQTKRKYATKAYNGIPFEKIGPTVGMNIGKIDLKSDVLLLWDLGGQEELQSLWDKYFLDCNGVIYVIDSSDSPRLGESYECFRNLLTHSDLEGIPLLVLANKQDKPSCITVDEVKEVFNKSAAFLGKRDCMLHGISALDGTGVDDGLQWMLEHVKRNYNRPPREKDI 861
            M+TLL GL+KY+FQKDEYCILI+GLDNAGKTTFLEQ+K ++  K Y G+   KI  TVG+NIG +D+    L+ WDLGGQEELQSLWDKY+ +C+GVIYVIDS+D  RL ES + F  ++T   L G+P+LVLANKQD  +C+++ ++K  F+   + +G+RDC+    SAL G GV +G++WM++ V RN +RPPR++DI
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRF-NKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGIEWMVKCVVRNVHRPPRQRDI 200
The following BLAST results are available for this feature:
BLAST of TCONS_00067629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARFRP3.308e-8156.22ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
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