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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067593 ID=TCONS_00067593|Name=TCONS_00067593|organism=Clytia hemisphaerica|type=transcript|length=3593bpRun BLAST on NCBI protein sequence of TCONS_00067593-protein >TCONS_00067593-protein ID=TCONS_00067593-protein|Name=TCONS_00067593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1022bp IIIETMVENFDIDDPSDWPKEFENLKKIESLLRCSICFEYFHAAVIAPNCRun BLAST on NCBI transcript from alignment at scaffold_471:64203..71539- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067593 ID=TCONS_00067593|Name=TCONS_00067593|organism=Clytia hemisphaerica|type=transcript|length=7337bp|location=Sequence derived from alignment at scaffold_471:64203..71539- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_471:64203..71539- >TCONS_00067593 ID=TCONS_00067593|Name=TCONS_00067593|organism=Clytia hemisphaerica|type=CDS|length=42966bp|location=Sequence derived from alignment at scaffold_471:64203..71539- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067593 vs. Swiss-Prot (Human)
Match: RAD18 (E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens GN=RAD18 PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.385e-33 Identity = 128/429 (29.84%), Postives = 195/429 (45.45%), Query Frame = 2
Query: 47 SDWPKEFENLKKIESLLRCSICFEYFHAAVIAPNCSHNYCSLCIRKHVLYKNNCPSCNKDLDDSSLKPNRVLDELVQYFKIARKQLLD--LVQVAEEHHGNLNTNPASTIKIDLDEKESRVESEDTSD---FEEAANYRLPLL----------ETKAHPSSHQKLQNRSVCMNSTVANHGNKA----------VVQCPNCDKPVL-----EKGINTHLDVCLSGGIAKTRSAAGNKRLHSSGSSENDQPRPKAKRKNESKKSGSTSKMKIETANDIISGRKVNVRKHLPKQCLDVMSDKQLKTKLKEYNLSTKGDKNTLKRRLKDFHTMYNSECDALNPLSAQEIARKL-TLEEEHIKKHGYKPKTLVSTHDRSVTEQHKIDIIH-KHDQTYDDHFKKLEEEAKKRLGIHMTSQKSQQSLTVKTEDNNT 1237
S WP +K I+ LLRC ICFEYF+ A+I P CSHNYCSLCIRK + YK CP+C + + LK NR+LDELV+ AR LL L A+ + + N A + + ++S + D E + LL + +A P++ K + RSV +A ++A + Q D PV E IN HLD CLS K+ S +P PK T +++S R +++K L + L + +KQ L +R ++F MYN++CDAL+P SA EI R++ +E+ ++ K V + TE+ +ID IH K+ + + F+ L ++A+K G + SQ+++T+ ED +T
Sbjct: 7 SRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPVASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTK-ETRSV---EEIAPDPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLS---------REEKKESLRSSVHKRKPLPK-------------------TVYNLLSDR--DLKKKLKEHGLSIQGNKQ-----------------QLIKRHQEFVHMYNAQCDALHPKSAAEIVREIENIEKTRMRLEASKLNESVMVFTKDQTEK-EIDEIHSKYRKKHKSEFQLLVDQARK--GYKKIAGMSQKTVTITKEDEST 381 The following BLAST results are available for this feature:
BLAST of TCONS_00067593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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