Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00067593-protein ID=TCONS_00067593-protein|Name=TCONS_00067593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1022bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0003677 DNA binding GO:0046872 metal ion binding GO:0003684 damaged DNA binding
Vocabulary: Biological Process
Term Definition
GO:0006281 DNA repair
Vocabulary: Cellular Component
Term Definition
GO:0005634 nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006281 DNA repair
cellular_component
GO:0005634 nucleus
molecular_function
GO:0003684 damaged DNA binding
molecular_function
GO:0003677 DNA binding
molecular_function
GO:0046872 metal ion binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
100 200 300 400 500 600 700 800 900 1000 Expect = 0.0019 / Score = 27.4 Expect = 9.4E-7 / Score = 28.3 Expect = 1.3E-5 / Score = 24.6 Score = 9.107 Expect = 0.0048 / Score = 26.1 Expect = 2.0E-5 / Score = 34.0 Score = 10.97 Expect = 3.68164E-11 / Score = 58.9964 Expect = 7.7E-6 / Score = 25.6 Expect = 9.5E-54 / Score = 181.1 Expect = 8.7E-18 / Score = 63.4 Score = Score = Score = Score = Score = Score = Score = Score = Sequence SM00513 PF02037 G3DSA:1.10.720.30 PS50800 SM00734 SM00184 PS50089 cd00162 PF00097 TIGR00599 G3DSA:3.30.40.10 mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite SSF57850 PS00518
IPR Term IPR Description Source Source Term Source Description Alignment
IPR003034 SAP domain SMART SM00513 sap_9 coord: 278..312 IPR003034 SAP domain PFAM PF02037 SAP coord: 281..311 IPR003034 SAP domain GENE3D 1.10.720.30 coord: 223..343 IPR003034 SAP domain PROSITE PS50800 SAP coord: 278..312 IPR006642 Zinc finger, Rad18-type putative SMART SM00734 c2hc_5 coord: 184..207 IPR001841 Zinc finger, RING-type SMART SM00184 ring_2 coord: 34..72 IPR001841 Zinc finger, RING-type PROSITE PS50089 ZF_RING_2 coord: 34..73 IPR001841 Zinc finger, RING-type CDD cd00162 RING coord: 34..76 IPR018957 Zinc finger, C3HC4 RING-type PFAM PF00097 zf-C3HC4 coord: 34..72 IPR004580 DNA repair protein, Rad18 TIGRFAM TIGR00599 TIGR00599 coord: 8..390 IPR013083 Zinc finger, RING/FYVE/PHD-type GENE3D 3.30.40.10 coord: 11..107 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 814..833 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 394..432 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 529..803 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 465..508 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 901..953 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 217..257 None No IPR available SUPERFAMILY 57850 RING/U-box coord: 26..98 IPR017907 Zinc finger, RING-type, conserved site PROSITE PS00518 ZF_RING_1 coord: 50..59
Blast
BLAST of TCONS_00067593-protein vs. Swiss-Prot (Human)
Match:
RAD18 (E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens GN=RAD18 PE=1 SV=2)
HSP 1 Score: 138.272 bits (347), Expect = 2.135e-34
Identity = 128/429 (29.84%), Postives = 195/429 (45.45%), Query Frame = 0
Query: 16 SDWPKEFENLKKIESLLRCSICFEYFHAAVIAPNCSHNYCSLCIRKHVLYKNNCPSCNKDLDDSSLKPNRVLDELVQYFKIARKQLLD--LVQVAEEHHGNLNTNPASTIKIDLDEKESRVESEDTSD---FEEAANYRLPLL----------ETKAHPSSHQKLQNRSVCMNSTVANHGNKA----------VVQCPNCDKPVL-----EKGINTHLDVCLSGGIAKTRSAAGNKRLHSSGSSENDQPRPKAKRKNESKKSGSTSKMKIETANDIISGRKVNVRKHLPKQCLDVMSDKQLKTKLKEYNLSTKGDKNTLKRRLKDFHTMYNSECDALNPLSAQEIARKL-TLEEEHIKKHGYKPKTLVSTHDRSVTEQHKIDIIH-KHDQTYDDHFKKLEEEAKKRLGIHMTSQKSQQSLTVKTEDNNT 412
S WP +K I+ LLRC ICFEYF+ A+I P CSHNYCSLCIRK + YK CP+C + + LK NR+LDELV+ AR LL L A+ + + N A + + ++S + D E + LL + +A P++ K + RSV +A ++A + Q D PV E IN HLD CLS K+ S +P PK T +++S R +++K L + L + +KQ L +R ++F MYN++CDAL+P SA EI R++ +E+ ++ K V + TE+ +ID IH K+ + + F+ L ++A+K G + SQ+++T+ ED +T
Sbjct: 7 SRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPVASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTK-ETRSV---EEIAPDPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLS---------REEKKESLRSSVHKRKPLPK-------------------TVYNLLSDR--DLKKKLKEHGLSIQGNKQ-----------------QLIKRHQEFVHMYNAQCDALHPKSAAEIVREIENIEKTRMRLEASKLNESVMVFTKDQTEK-EIDEIHSKYRKKHKSEFQLLVDQARK--GYKKIAGMSQKTVTITKEDEST 381
The following BLAST results are available for this feature:
