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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067544 ID=TCONS_00067544|Name=TCONS_00067544|organism=Clytia hemisphaerica|type=transcript|length=3340bp
ttttttttctttggttGGAGTTTGTTACGTTGGATTTTTAGGAgtTCAAT
CACTGAATACAAATGTATCATATTGATTTCAGCCCAAAGCAAAAGTGCAA
AATCAAAACGCAATGAAACAACAACAATCCAAAATGGTTGACAACAAAGT
CACCATCCGACGAAAAGATAAACATGTTCCAATTCCGATCGAGGAATTGA
TCGATTACTACGGCTTCGGTAAACACACCATCAAAATGGTCATTCTTTTG
AGTTGCGTTTGTTTCGCATACGGAGCTCTTACTAACATTCTTGCCAACGT
TATCTTAATCAATTGGGCGTGTGAACCGGGCGATCGGGCGGATGAACCGC
AACTCGTATGGGCAACTTTATGTATTGGTTTGGCCCTTGGATCGTTTTAC
TTTGGCTGGTTGGCGGATCGGTACGGGCGTAAATTAATGATTGCAGTTAC
GACCACACTCAGTTTATATTTCACACTACTTTTATGTGCTTCTGAAAGTC
ATTTCGATGctttattaattttatttttcacagCGTCTGGCTTGAGTGGC
GGAAGAATCATATCAAACTATTCTGCAGAATCGTTCCCTGTCAAACACCG
AGCTAGAATACAAACCGTTTTAGGATTATCATCTAGCCTTGGTTCAGTTG
TTTATTCGTATCTAGCCTATACTCAGAGACTGGGCTGGCGTCATTTCACC
CTTACAGCAAGTGCACcgttgattgtttttattgttatacCGTTTTGGCT
ACCCGAATCTATACCGTATTTACAAATGACCGGAAATGAAGACGAACTAT
ACAGAGTGTTCCAGCATTTAGCAGAAAGTCATGGAAAGAATTTAAAACGA
AGAACTTTATTAACAGCGAGAACCATCAAAAATAGAGGCAATCTCCCGAC
CTTGTTTTCAAAATCTACAATTTGTGGAACTTTGATCGTTATGTTGCTAT
GGGCAACGAGTCGTTTATCCATGAGTGTTTCGACTGTGCTTCATTACAAC
ACTATAGTGTTTAACAAGACAACATGTCCAGAAAACCAAGTAGATATTCT
ACAAAGCTTGTCATTCAAAGAAGTACTCAACTGCAAACACAGTTCAGATG
TCTTTTACGTTTCATTTATTGGCTCTCTTGCAGAATCAATTGGTCTCGCa
atcacttttatttttatcaatcaTGTCAGTCGAAGATTTGCTTTTATATG
CTTGTTACTCATCAATTCGGCGGGATTTATTGCTATGAATATTTGCAGTG
TAGCGACCATTCATACAGCTCTGGTTTTAATAACTATGGCAACAAGTGCT
AGTTTCTTTCAAGTACTTTGTATTTTCACCAACGAATTTTACCATGCTTC
AGTTCGTTGCACTGCAACTGGGATGTTCAATTTTATATCTTTATTAGCCT
TGGTTTTGATCCCGATTTTGATTAGCCTGAGTTTTGCATTGACTCCGATT
GTAGTGACAGTGTTTTTTGTATCCTTTNGATCGTTATGTTGCTATGGGCA
ACGAGTCGTTTATCCATGAGTGTTTCGACTGTGCTTCATTACAACACTAT
AGTGTTTAACAAGACAACATGTCCAGAAAACCAAGTAGATATTCTACAAA
GCTTGTCATTCAAAGAAGTACTCAACTGCAAACACAGTTCAGATGTCTTT
TACGTTTCATTTATTGGCTCTCTTGCAGAATCAATTGGTCTCGCaatcac
ttttatttttatcaatcaTGTCAGTCGAAGATTTGCTTTTATATGCTTGT
TACTCATCAATTCGGCGGGATTTATTGCTATGAATATTTGCAGTGTAGCG
ACCATTCATACAGCTCTGGTTTTAATAACTATGGCAACAAGTGCTAGTTT
CTTTCAAGTACTTTGTATTTTCACCAACGAATTTTACCATGCTTCAGTTC
GTTGCACTGCAACTGGGATGTTCAATTTTATATCTTTATTAGCCTTGGTT
TTGATCCCGATTTTGATTAGCCTGAGTTTTGCATTGACTCCGATTGTAGT
AACAGTGTTTTTTGTATCCTTTACTGTACTTTGTTGTTTCGGCTTGTGGT
GGACCCGAATCAAAACAACATGAAATTCAACGTGTTTGActtgattttga
aattgtttaGATTTATTCATTGCCATCAAAGACTTAGTTGCCATGTATAA
TTTGTGAAATATTCCaatataaaaaagtttcagtttttatgatattatat
tttaatatactactttaggcgtacaaacttttgtgagcagaaactttcgt
gagTTCAAAAAATCTcgaatttaacgaaaaaatatttttcgcgagcataa
actttcgcgtaTAGTATCCAGATTCCAGACacacagccaattcgattgac
ttccaaatttgccatactcaccaactttgccaaatctacaatctcaatgt
caaaagatcacagcttcatggcaaatttgtacatcgctacGCCGCGATTA
TGATttccgttttgtgatgcttagtcagcagttttctgtcggcgtttgta
aagcgaacgattttttaaccaatcagattgccgatcggcattgttttgct
ttagcattggaaggtcttctatttttcaaaatctttggcaaaagtggcaa
aattggaaaaaagaaaagaaaagaacagaggtctcgtgggaacagtgttt
tgtatggagacgtatggaggtaagttccaaaaatgccaagaatgccagat
tcaccacatcttttttatttggcatttatggcactcaaattttgccacat
ttgccaaatttttgtcaatcgaatgcagaataattggcaatcagggcaaa
aatggcatattttgaagtcaatcgaattggctgacAGTAGATCCCTTGGA
TCTGCTCACCCAGCTCAGACAAAAACGCTCTTAGTTATTCGAatttcagt
tattcgaagcgATTTAATTCCCCTTAGAGCCAATTTTAAGCTAATTCACC
CTcagttattcgaatttttcttattGGGAGATCGTCGAGTGAGaacattg
attttctgtgattaaaaaacttttattcttcaaaaaaatcgTCAAGTTTC
AGAATTCATGGCTATTTACACTCTTCAAGTAATTTGAACATTCTccaaca
ttttctttataacttTCATATTTTAAAACCTGTTAataatttgttcaaat
ttattCTCTCTTCAAAAAAGTAGAAATTCTTTGTCTTTATCACGCTCAAC
TGAACCACAATGCCTCAATTACTTCAGAAAAGTCCATATGGTTAAGTTGG
TCAGTCAGGAagaaagacacttttttattctgctactggcagtttcatgc
cacttgggtgacaatcttcaggcaTATGGTTAGGTTGAAA Run BLAST on NCBI protein sequence of TCONS_00067544-protein >TCONS_00067544-protein ID=TCONS_00067544-protein|Name=TCONS_00067544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MKQQQSKMVDNKVTIRRKDKHVPIPIEELIDYYGFGKHTIKMVILLSCVC
FAYGALTNILANVILINWACEPGDRADEPQLVWATLCIGLALGSFYFGWL
ADRYGRKLMIAVTTTLSLYFTLLLCASESHFDALLILFFTASGLSGGRII
SNYSAESFPVKHRARIQTVLGLSSSLGSVVYSYLAYTQRLGWRHFTLTAS
APLIVFIVIPFWLPESIPYLQMTGNEDELYRVFQHLAESHGKNLKRRTLL
TARTIKNRGNLPTLFSKSTICGTLIVMLLWATSRLSMSVSTVLHYNTIVF
NKTTCPENQVDILQSLSFKEVLNCKHSSDVFYVSFIGSLAESIGLAITFI
FINHVSRRFAFICLLLINSAGFIAMNICSVATIHTALVLITMATSASFFQ
VLCIFTNEFYHASVRCTATGMFNFISLLALVLIPILISLSFALTPIVVTV
FFVSFXSLCCYGQRVVYP Run BLAST on NCBI transcript from alignment at scaffold_471:43764..49927+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067544 ID=TCONS_00067544|Name=TCONS_00067544|organism=Clytia hemisphaerica|type=transcript|length=6164bp|location=Sequence derived from alignment at scaffold_471:43764..49927+ (Clytia hemisphaerica)
ttttttttctttggttGGAGTTTGTTACGTTGGATTTTTAGGAGTAAGTT
CCAGAGGCTAACAAGGAGTTTTTATATACATTTGTTGCTTTTAACTTTTA
AGGTGTTGAATAACCAAAAATCGAATATTATACTGCTTGTATTCAGATTT
CTAGAACCCATTACTGATTACCGGTCTAAATTTTCAATAAGCTCCAGTCA
TTCATGTCTTCCGATAAAGGGGGATATTGCAGACCGGTATGCTAAGCACC
AAAATTTCACTCTTAAATCATTTTCTGAATACATACTGCTTTTGACGAAT
TGATTCAATAAAGaaataccgtgaagtcgggtaacttgcatcagcagtgg
agggaaacttgcatagccataaAAAAGACTGATAAACCTGATAGTAGCTC
TTCGTagttttcttacgcgcacggtaaacctctgaaggcgcttgaaaatt
atacatctgaggaaaatagtcctcccgcggaaaattctacaacaagaatc
ttgttgtgcgccagaaagttaaaaactgatacggcgccctattcataatc
acaatcacgcaactttgtcgtcgttcctagtccttttagacgaacgcggt
ccttacgatttcgagattgcatattcgtcagatttttatgtttttacaca
tccctttagagcttcagcgtggtgtgcagaaaacattcaccatctgatct
caggttaatcAATCAGtcgaccaatcaaagcagcaaattttcaaaacaaa
tgaactacgcagcttcgctcgcagctctactctaccatttttgttttgat
ttaactttgtattttaatgaccagccaggtcattcatttgagggatatgc
atatgttagcctccactgatgcaagttacccgatctcacggtaccaaatc
aatgatccaatgatccatTTTACAATCCTGCCTGTAAACTGGTAGTAGCG
TAGACGGGGTGAAGGAACATTTGCTTACCAGCGGATACCCcattaaaacc
tacaaaaatagAGGTACCCTCTATCTGAAAATTTATGTGGAATTtcaggc
tgaaactttttgtgttgaaagtacaCTGCCAATTGTTTTCTTCCCTAGAA
GCAATGTTTTGTAGAAaacagttttcattttttcacgaaaaagtgaaaaa
atacttttttaactatttaccccttaaaaccttcAAATGGTTTTTCTCGA
ATAACTTTTTTGGTCCCCAATTTGGACAGTCattcactgcaaagttacta
atgttaCGATTAGATCATTGGTaacctaaatattttccaaaatgtACGTT
AAAATCAACTTACACCTTAAATTTGCGATcaatagcacccattctcaggg
attcacttatggatttttagTTGACCTATACCTTAATGTTTCAGGATCCG
TTTGTGACGTAAATAAATAATAATCTAAAAATTAGTTATTAAGGAAAAtg
tgaattatgacgtcatcaaattatgacgtcataaattgtgaaatacctta
tcggccaaaacttagtcggccttaattttagtcggccttaattttagtcg
gccttaattttagtcggccttaattattagtcggccctaattttagtcac
caagccaaaatttagtcacttagggccgactaagttttggccgacaaggt
agctctaactctataagtaccagtggatacccctgttatgcgcagttttg
taattttgacaaaaaatcgaccaaattttcctttaaaatagTAGATAAAA
ATcctaaagattttttgtaaCGGAGTTAAATCGAGTTAATCCgagtttta
agttttgaaatgtgGCATAATTAGTTTCAGCGTTCTTGATTACAAAAGga
attaactttttgaaaagtataCGTGATGTGTGACGATTAAGAataattca
tttcaaaattccgAGTTGAAAGAGTTATAACTCGGCATTACGTTTTTGGG
TTTTGTTATTAAATTTATCAACGAAAATGaacattttagccaattttaaa
GTGCTAGGAACCCAAATAAACAAATAAGTCGTGAGCAAGGGGTcgatttt
tgtaggttttaaggtgtaatagtgtaggttttaaggtgtaatttgatttt
aatgtacagttttgaaagtatttaggtaccaatgatctaattgtagcatt
acagtagtaactttgcagtgaatATTGCAGtgactttttataaaaagtta
ttcaagaaaaccattctGTAGGTTTTAGGGGCGAATagctaaaatttcat
tttttcacgAAGCCATAAACCATACCCAGGGAAGGAATTCTAGATAAAAG
TTTCATTCCTTTCTGTTTTCTCTATCAGGATATAGGGGCTACCttttttg
ttgtaggttttaaggggtatccactagTAAAGGAATTCAAAACACTTCAA
ATCTCATAACTGATCTTTTGACTATTGTCAGAGAGCCCTTAGATAAGCTA
AATTGCTTTTTCTTTCGAATAATTTTTGTAATCTCATCGTCGTAATCGCG
TGTTTTGGGTTTTACTATAGAAATCACATTAAATTTGAACTTTtcttatt
aattttttgataCAATATCTAATTCGATGCGACTTTCGTTtagacttttt
aaaattaacaCAGCTTGGATATGATTGAATAATCTTGGGTGAGAGTACGG
GTAGTACACGCTGAGATTCACATTCTAGATAAAAACATGCTTTTTGGTAC
CCGGaacttttagttttagtttttaaagtgttaatttttgttaaaatgtt
TAGGGGAAACTAGATTCTCTCTAAATCAGTAATATAGAAGACAAGGGGAA
GAAAAGTCTCACTTGAAACTTTAcgttgaaagtttgaaaattgatttact
ctttttatatttcacaggtTCAATCACTGAATACAAATGTATCATATTGA
TTTCAGCCCAAAGCAAAAGTGCAAAATCAAAACGCAATGAAACAACAACA
ATCCAAAATGGTTGACAACAAAGTCACCATCCGACGAAAAGATAAACATG
TTCCAATTCCGATCGAGGAATTGATCGATTACTACGGCTTCGGTAAACAC
ACCATCAAAATGGTCATTCTTTTGAGTTGCGTTTGTTTCGCATACGGAGC
TCTTACTAACATTCTTGCCAACGTTATCTTAATCAATTGGGCGTGTGAAC
CGGGCGATCGGGCGGATGAACCGCAACTCGTATGGGCAACTTTATGTATT
GGTTTGGCCCTTGGATCGTTTTACTTTGGCTGGTTGGCGGATCGGTACGG
GCGTAAATTAATGATTGCAGTTACGACCACACTCAGTTTATATTTCACAC
TACTTTTATGTGCTTCTGAAAGTCATTTCGATGctttattaattttattt
ttcacagCGTCTGGCTTGAGTGGCGGAAGAATCATATCAAACTATTCTGC
AGAATCGTTCCCTGTCAAACACCGAGCTAGAATACAAACCGTTTTAGGAT
TATCATCTAGCCTTGGTTCAGTTGTTTATTCGTATCTAGCCTATACTCAG
AGACTGGGCTGGCGTCATTTCACCCTTACAGCAAGTGCACcgttgattgt
ttttattgttatacCGTTTTGGCTACCCGAATCTATACCGTATTTACAAA
TGACCGGAAATGAAGACGAACTATACAGAGTGTTCCAGCATTTAGCAGAA
AGTCATGGAAAGAATTTAAAACGAAGAACTTTATTAACAGCGAGAACCAT
CAAAAATAGAGGCAATCTCCCGACCTTGTTTTCAAAATCTACAATTTGTG
GAACTTTGATCGTTATGTTGCTATGGGCAACGAGTCGTTTATCCATGAGT
GTTTCGACTGTGCTTCATTACAACACTATAGTGTTTAACAAGACAACATG
TCCAGAAAACCAAGTAGATATTCTACAAAGCTTGTCATTCAAAGAAGTAC
TCAACTGCAAACACAGTTCAGATGTCTTTTACGTTTCATTTATTGGCTCT
CTTGCAGAATCAATTGGTCTCGCaatcacttttatttttatcaatcaTGT
CAGTCGAAGATTTGCTTTTATATGCTTGTTACTCATCAATTCGGCGGGAT
TTATTGCTATGAATATTTGCAGTGTAGCGACCATTCATACAGCTCTGGTT
TTAATAACTATGGCAACAAGTGCTAGTTTCTTTCAAGTACTTTGTATTTT
CACCAACGAATTTTACCATGCTTCAGTTCGTTGCACTGCAACTGGGATGT
TCAATTTTATATCTTTATTAGCCTTGGTTTTGATCCCGATTTTGATTAGC
CTGAGTTTTGCATTGACTCCGATTGTAGTGACAGTGTTTTTTGTATCCTT
TNGATCGTTATGTTGCTATGGGCAACGAGTCGTTTATCCATGAGTGTTTC
GACTGTGCTTCATTACAACACTATAGTGTTTAACAAGACAACATGTCCAG
AAAACCAAGTAGATATTCTACAAAGCTTGTCATTCAAAGAAGTACTCAAC
TGCAAACACAGTTCAGATGTCTTTTACGTTTCATTTATTGGCTCTCTTGC
AGAATCAATTGGTCTCGCaatcacttttatttttatcaatcaTGTCAGTC
GAAGATTTGCTTTTATATGCTTGTTACTCATCAATTCGGCGGGATTTATT
GCTATGAATATTTGCAGTGTAGCGACCATTCATACAGCTCTGGTTTTAAT
AACTATGGCAACAAGTGCTAGTTTCTTTCAAGTACTTTGTATTTTCACCA
ACGAATTTTACCATGCTTCAGTTCGTTGCACTGCAACTGGGATGTTCAAT
TTTATATCTTTATTAGCCTTGGTTTTGATCCCGATTTTGATTAGCCTGAG
TTTTGCATTGACTCCGATTGTAGTAACAGTGTTTTTTGTATCCTTTACTG
TACTTTGTTGTTTCGGCTTGTGGTGGACCCGAATCAAAACAACATGAAAT
TCAACGTGTTTGActtgattttgaaattgtttaGATTTATTCATTGCCAT
CAAAGACTTAGTTGCCATGTATAATTTGTGAAATATTCCaatataaaaaa
gtttcagtttttatgatattatattttaatatactactttaggcgtacaa
acttttgtgagcagaaactttcgtgagTTCAAAAAATCTcgaatttaacg
aaaaaatatttttcgcgagcataaactttcgcgtaTAGTATCCAGATTCC
AGACacacagccaattcgattgacttccaaatttgccatactcaccaact
ttgccaaatctacaatctcaatgtcaaaagatcacagcttcatggcaaat
ttgtacatcgctacGCCGCGATTATGATttccgttttgtgatgcttagtc
agcagttttctgtcggcgtttgtaaagcgaacgattttttaaccaatcag
attgccgatcggcattgttttgctttagcattggaaggtcttctattttt
caaaatctttggcaaaagtggcaaaattggaaaaaagaaaagaaaagaac
agaggtctcgtgggaacagtgttttgtatggagacgtatggaggtaagtt
ccaaaaatgccaagaatgccagattcaccacatcttttttatttggcatt
tatggcactcaaattttgccacatttgccaaatttttgtcaatcgaatgc
agaataattggcaatcagggcaaaaatggcatattttgaagtcaatcgaa
ttggctgacAGTAGATCCCTTGGATCTGCTCACCCAGCTCAGACAAAAAC
GCTCTTAGTTATTCGAatttcagttattcgaagcgATTTAATTCCCCTTA
GAGCCAATTTTAAGCTAATTCACCCTcagttattcgaatttttcttattG
GGAGATCGTCGAGTGAGaacattgattttctgtgattaaaaaacttttat
tcttcaaaaaaatcgTCAAGTTTCAGAATTCATGGCTATTTACACTCTTC
AAGTAATTTGAACATTCTccaacattttctttataacttTCATATTTTAA
AACCTGTTAataatttgttcaaatttattCTCTCTTCAAAAAAGTAGAAA
TTCTTTGTCTTTATCACGCTCAACTGAACCACAATGCCTCAATTACTTCA
GAAAAGTCCATATGGTTAAGTTGGTCAGTCAGGAagaaagacactttttt
attctgctactggcagtttcatgccacttgggtgacaatcttcaggcaTA
TGGTTAGGTTGAAA Coding sequence (CDS) from alignment at scaffold_471:43764..49927+ >TCONS_00067544 ID=TCONS_00067544|Name=TCONS_00067544|organism=Clytia hemisphaerica|type=CDS|length=1407bp|location=Sequence derived from alignment at scaffold_471:43764..49927+ (Clytia hemisphaerica)
ATGAAACAACAACAATCCAAAATGGTTGACAACAAAGTCACCATCCGACG
AAAAGATAAACATGTTCCAATTCCGATCGAGGAATTGATCGATTACTACG
GCTTCGGTAAACACACCATCAAAATGGTCATTCTTTTGAGTTGCGTTTGT
TTCGCATACGGAGCTCTTACTAACATTCTTGCCAACGTTATCTTAATCAA
TTGGGCGTGTGAACCGGGCGATCGGGCGGATGAACCGCAACTCGTATGGG
CAACTTTATGTATTGGTTTGGCCCTTGGATCGTTTTACTTTGGCTGGTTG
GCGGATCGGTACGGGCGTAAATTAATGATTGCAGTTACGACCACACTCAG
TTTATATTTCACACTACTTTTATGTGCTTCTGAAAGTCATTTCGATGctt
tattaattttatttttcacagCGTCTGGCTTGAGTGGCGGAAGAATCATA
TCAAACTATTCTGCAGAATCGTTCCCTGTCAAACACCGAGCTAGAATACA
AACCGTTTTAGGATTATCATCTAGCCTTGGTTCAGTTGTTTATTCGTATC
TAGCCTATACTCAGAGACTGGGCTGGCGTCATTTCACCCTTACAGCAAGT
GCACcgttgattgtttttattgttatacCGTTTTGGCTACCCGAATCTAT
ACCGTATTTACAAATGACCGGAAATGAAGACGAACTATACAGAGTGTTCC
AGCATTTAGCAGAAAGTCATGGAAAGAATTTAAAACGAAGAACTTTATTA
ACAGCGAGAACCATCAAAAATAGAGGCAATCTCCCGACCTTGTTTTCAAA
ATCTACAATTTGTGGAACTTTGATCGTTATGTTGCTATGGGCAACGAGTC
GTTTATCCATGAGTGTTTCGACTGTGCTTCATTACAACACTATAGTGTTT
AACAAGACAACATGTCCAGAAAACCAAGTAGATATTCTACAAAGCTTGTC
ATTCAAAGAAGTACTCAACTGCAAACACAGTTCAGATGTCTTTTACGTTT
CATTTATTGGCTCTCTTGCAGAATCAATTGGTCTCGCaatcacttttatt
tttatcaatcaTGTCAGTCGAAGATTTGCTTTTATATGCTTGTTACTCAT
CAATTCGGCGGGATTTATTGCTATGAATATTTGCAGTGTAGCGACCATTC
ATACAGCTCTGGTTTTAATAACTATGGCAACAAGTGCTAGTTTCTTTCAA
GTACTTTGTATTTTCACCAACGAATTTTACCATGCTTCAGTTCGTTGCAC
TGCAACTGGGATGTTCAATTTTATATCTTTATTAGCCTTGGTTTTGATCC
CGATTTTGATTAGCCTGAGTTTTGCATTGACTCCGATTGTAGTGACAGTG
TTTTTTGTATCCTTTNGATCGTTATGTTGCTATGGGCAACGAGTCGTTTA
TCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067544-exon-scaffold_471-1491911889:43764..43806 | TCONS_00067544-exon-scaffold_471-1491911889:43764..43806 | Clytia hemisphaerica | exon |
| TCONS_00067544-exon-scaffold_471-1510915933:43764..43806 | TCONS_00067544-exon-scaffold_471-1510915933:43764..43806 | Clytia hemisphaerica | exon |
| TCONS_00067544-exon-scaffold_471-1575043694:43764..43806 | TCONS_00067544-exon-scaffold_471-1575043694:43764..43806 | Clytia hemisphaerica | exon |
| TCONS_00067544-exon-scaffold_471-1491911889:46631..49927 | TCONS_00067544-exon-scaffold_471-1491911889:46631..49927 | Clytia hemisphaerica | exon |
| TCONS_00067544-exon-scaffold_471-1510915933:46631..49927 | TCONS_00067544-exon-scaffold_471-1510915933:46631..49927 | Clytia hemisphaerica | exon |
| TCONS_00067544-exon-scaffold_471-1575043694:46631..49927 | TCONS_00067544-exon-scaffold_471-1575043694:46631..49927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:43764..49927 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00067544 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 7.441e-19 Identity = 100/430 (23.26%), Postives = 201/430 (46.74%), Query Frame = 2
Query: 188 IEELIDYYGFGKHTIKMVILLSCVCFAYGALTNILANVILINWACEPGDRADEPQLVWATLCIGLALGSFYFGWLADRYGRKLMIAVXXXXXXXXXXXXCASESHFDALLILFFTASGLSGGRIISNYSAESFPVKHRARIQTXXXXXXXXXXXXXXXXAY--TQRLGWRHFTLTASAPLIVFIVIPFWLPESIPYLQMTGNEDELYRVFQHLAESHGKNLKRRTLLTARTIKNRGNLPTLFSKSTICGTLIVMLLWATSRLSMSVSTVLHYNTIVFNKTTCPENQVDILQS----LSFKEVLNCKHSSDVFYVSFI-GSLAESIGLAITFIFINHVSRRFAFICLLLINSAGFIAMNICSVATIHTALVLITMATSASFFQVLCIFTNEFYHASVRC----TATGMFNFISLLALVLIPILISLSFALT 1444
+E+ ++ GFGK K+ +L A A+ ++ +++ CE + + L+ + + +G+ S +G ++D+YGRK + ++ +LY+ +L + + L++ G+ G AE P+K RA+ ++ + ++G+V LA LGWR + ++ PL++F V+ FWLPES Y ++GN+++ + +A +G + L+ +R ++RG + LF+ TL++ +W ++ S +Y ++ V + S + K L C++ S+ Y+ + +L+E G+ +T I+ + R+ +I S + + IC + T L+ I A + FQ ++T E Y + R T +GM +L+ + +++ S LT
Sbjct: 70 VEDAVEAIGFGKFQWKLSVLTGLAWMA-DAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ-EDRGKMRDLFTPHFRWTTLLLWFIWFSNAFS-------YYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT 490
The following BLAST results are available for this feature:
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