TCONS_00067544-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067544-protein
Unique Name	TCONS_00067544-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	468

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067544-protein ID=TCONS_00067544-protein|Name=TCONS_00067544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MKQQQSKMVDNKVTIRRKDKHVPIPIEELIDYYGFGKHTIKMVILLSCVC
FAYGALTNILANVILINWACEPGDRADEPQLVWATLCIGLALGSFYFGWL
ADRYGRKLMIAVTTTLSLYFTLLLCASESHFDALLILFFTASGLSGGRII
SNYSAESFPVKHRARIQTVLGLSSSLGSVVYSYLAYTQRLGWRHFTLTAS
APLIVFIVIPFWLPESIPYLQMTGNEDELYRVFQHLAESHGKNLKRRTLL
TARTIKNRGNLPTLFSKSTICGTLIVMLLWATSRLSMSVSTVLHYNTIVF
NKTTCPENQVDILQSLSFKEVLNCKHSSDVFYVSFIGSLAESIGLAITFI
FINHVSRRFAFICLLLINSAGFIAMNICSVATIHTALVLITMATSASFFQ
VLCIFTNEFYHASVRCTATGMFNFISLLALVLIPILISLSFALTPIVVTV
FFVSFXSLCCYGQRVVYP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042186	XLOC_042186	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067544	TCONS_00067544	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 35..230 e-value: 6.9E-21 score: 73.9
None	No IPR available	GENE3D	1.20.1250.20		coord: 260..462 e-value: 1.0E-7 score: 30.9
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 48..434 e-value: 5.3E-18 score: 65.0
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 42..468 score: 17.141
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 43..439 e-value: 1.61093E-11 score: 63.1017
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 42..459

Blast

[Close]

BLAST of TCONS_00067544-protein vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.650e-25
Identity = 94/418 (22.49%), Postives = 196/418 (46.89%), Query Frame = 0

Query:   26 IEELIDYYGFGKHTIKMVILLSCVCFAYGALTNILANVILINWACEPGDRADEPQLVWATLCIGLALGSFYFGWLADRYGRKLMIAVTTTLSLYFTLLLCASESHFDALLILFFTASGLSGGRIISNYSAESFPVKHRARIQTVLGLSSSLGSVVYSYLAY--TQRLGWRHFTLTASAPLIVFIVIPFWLPESIPYLQMTGNEDELYRVFQHLAESHGKNLKRRTLLTARTIKNRGNLPTLFSKSTICGTLIVMLLWATSRLSMSVSTVLHYNTIVFNKTTCPENQV----DILQSLSFKEVLNCKHSSDVFYVSFIG-SLAESIGLAITFIFINHVSRRFAFICLLLINSAGFIAMNICSVATIHTALVLITMATSASFFQVLCIFTNEFYHASVRCTATGMFNFISLLALVLIPIL 436
            +E+ ++  GFGK   K+ +L      A  A+  ++ +++     CE    + +  L+ + + +G+   S  +G ++D+YGRK  + ++   +LY+ +L   +  +   L++      G+ G        AE  P+K RA+   ++ +  ++G+V    LA      LGWR   + ++ PL++F V+ FWLPES  Y  ++GN+++     + +A  +G  +    L+ +R  ++RG +  LF+      TL++  +W ++  S       +Y  ++          V       +++  K  L C++ S+  Y+  +  +L+E  G+ +T   I+ + R+       +I S   + + IC    + T L+ I  A  +  FQ   ++T E Y  + R    G  + ++ +  ++ P +
Sbjct:   70 VEDAVEAIGFGKFQWKLSVLTGLAWMA-DAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ-EDRGKMRDLFTPHFRWTTLLLWFIWFSNAFS-------YYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFI 478

The following BLAST results are available for this feature:

BLAST of TCONS_00067544-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067544-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SVOP	1.650e-25	22.49	Synaptic vesicle 2-related protein OS=Homo sapiens...	[more]

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TCONS_00067544-protein (polypeptide) - C. hemisphaerica