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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067239 ID=TCONS_00067239|Name=TCONS_00067239|organism=Clytia hemisphaerica|type=transcript|length=1963bp
TTCAGcgataaaaaaagaacagaaaaacaagaaattatttaaaaaaacag
cTACAATGGCCAGCATCAATTGTGACAACATCGTTCCGAACGAAGAGCGA
AATGGAAAATTAGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCAT
TATTAAGACAAAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAA
TGGTATCTAGTCCAATGGATTTCAATAACAACGTAAATAATCTTTTCGAC
GTTGATGTTTGTGCTGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCC
TAAGGATTGGACCAACAAAATTGACTgtTCGGAGTTGGATGATTTACTCT
TAGTTACAAATACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGAA
CATATGAAGACAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATTT
ACTGCAagtttttcatgctgctcaaaAGTATGAATTGACTACATTAATTG
AAACAATTAGATTAAGGTCTCTGCGCATCTTAGATTTGGCTAGAAGCCAA
CGTACATTATACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGA
CCTCTGTATATGAACATGTCAATATCAACAATGATCCGGAGTTGCTTGCA
ATATTTCACCTCTTCAAATTAATTATTCACAAATTTCAAAACCCCGACTT
GGCTTCTAAAACAGATTTCTTAACCCACCAGATTCATGAGCACTTTATTG
ATTATGAGTCAATTTCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTG
GACGTTgagaacaaagaaattcatgTCAGTTCGTATTTACTCATAAACAA
CTCTCCTGTATTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTC
AAAACAGAAGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTAC
TTCCTTCAATTTCTACACACACTTCAAGATATTAAAGATGACACTAATAT
TTGGGCTCTGGCACCTTTGTGTCAAGAATATCAAGTGGATTGGCTCTCCA
ACAAAATAGAGTCCTTCATACGAAATTGTGCTACAAACAGAACAAAGACA
ATTCTCAACTATTTAGTGTTAGCTGAAGATATGCATTTTGGTATTGAAGT
AGAAAggagtttggtttctaaactcTTAAGAGGGTTCCAAAATATCAGTA
TGTGCTTGGAATTTCTCCTACTCAGCCGTCGAATGCAAGTTTGGATTGCA
AGAAGAAAATTAGCTGATTCTTTGAAGAAGTTTCTGATTGATCCGTACTT
TGATACTCTTCCCAGGTATGGCAAGCAAACAACCCGAGAGAAAAAAGAGG
CTGGGATAAAGAAATATAAAGCAGTTGATGCTGACGTTGTTTCCATATTT
CATGATCTAGATCAACCCAAAATGGAGCTTATAAATGCATAATGGCATAC
ATAATCACAATTTTTTGTTTGTGCCAGATTCTATTATATTAACTAAAagt
tctgttttatttaccatgcattgggcttttccagaaaaaaaccgcacacc
ccctgttgaggaggtctatCCCTTtatggctggaaatgctgtaaaccccc
tggaattccaggaaattttagatttaaacCCCTCTGAAATTCTTAaattt
agtaggatttaaaaagctaccacatggaattccagttatttttgacagat
ttttgtatctccctatggaattccaccacatatatcaaaccttaccccct
tggaacgaaagtggacctcctcaacaggggttttttttctggaaaaaccc
atTCTTAAAATGATTCTgtccctttttttgaaaatactttttattAAATC
ATTGtgatcattttttaaataaaaaacttatTGCCTCATTTCTTGccttt
tttggacattttttaaaattgatgtttttgttttttgtccATAACTTCTG
AACTAATAaagca Run BLAST on NCBI transcript from alignment at scaffold_466:478054..481240- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067239 ID=TCONS_00067239|Name=TCONS_00067239|organism=Clytia hemisphaerica|type=transcript|length=3187bp|location=Sequence derived from alignment at scaffold_466:478054..481240- (Clytia hemisphaerica)
TTCAGCGATAAAAAAAGAACAGAAAAACAAGAAATTATTTAAAAAAACAG
CTACAATGGCCAGCATCAATTGTGACAACATCGTTCCGAACGAAGAGCGA
AATGGAAAATTAGTTCCGTTCGATTTCCATGAAAATGAATGTGACGTCAT
TATTAAGACAAAAGACAAAGAAGTTCAGTTGCCATCCAGTTTCTTAGAAA
TGGTATCTAGTCCAATGGATTTCAATAACAACGTAAATAATCTTTTCGAC
GTTGATGTTTGTGCTGAAAGTGTAACCAAAGCGTTGTCATTTTATCACCC
TAAGGATTGGACCAACAAAATTGACTGTAAGTTTCGACTCTTTTCGCATT
TTGTAAGTATCAATCAAAAGCCATACCGTATTGCTTTGAATAAACGCCCC
GGGTGTGTTTAAAGGTGGCGTTCATCGAAAATCTTTCCTTAAATTAGTAG
CTACAAGATAGGCCGATTCGCGAAATTCTATCCACTCGAAAAATTTTGAT
CTTCGATTCGCGAAAAAAAGTCCACGTGAAAATTAAAGATCAGCGACTTT
AAGGTAGTACCAAGAAGGCTATTTTAGTTTAAAGCTATAGAAGGTGCCAA
GAGATTCTCATATTTTTATTTCTCATACAAATATGTTTTAATACTTTGGA
TTTTTTGTATTTTTAGGTTCGGAGTTGGATGATTTACTCTTAGTTACAAA
TACGCTTAAGCTAAAATCATTCAAATTACATTTAATCGAACATATGAAGA
CAGAATACGTATCAAAGTCAAAGCAATTTGATGAGAATTTACTGCAAGTT
TTTCATGCTGCTCAAAAGTATGAATTGACTACATTAATTGAAACAATTAG
ATTAAGGTCTCTGCGCATCTTAGATTTGGCTAGAAGCCAACGTACATTAT
ACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACCTCTGTATA
TGAACATGTCAATATCAACAATGATCCGGAGTTGCTTGCAATATTTCACC
TCTTCAAATTAATTATTCACAAATTTCAAAACCCCGACTTGGCTTCTAAA
ACAGATTTCTTAACCCACCAGATTCATGAGCACTTTATTGATTATGAGTC
AATTTCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGACGTTGAGA
ACAAAGAAATTCATGTCAGTTCGTATTTACTCATAAACAACTCTCCTGTA
TTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAAACAGAAG
GATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTCCTTCAAT
TTCTACACACACTTCAAGATATTAAAGGTATTTTTGTGTACAATACTCTT
GAAGTAACTTATCGTTTTTTGAACATTTCCCGACCTTTTTTCGACCTTCA
CAAACAAATTACTTCTATAGTGTCTTTTCTAATCATCAATGAATTTAGAT
TTTCAAAATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCTACCCATTT
GTAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAGAATATCA
AGTGGATTGGCTCTCCAACAAAATACAGTCCTTCATACGAAATTGTGCTA
GAAANATACCTCGCTGGAGAAAATATATCGATGTGAAATTTTAGAGACCT
CTGTATATGAACATGTCAATATCAACAATGATCCGGAGTTGCTTGCAATA
TTTCACCTCTTCAAATTAATTATTCACAAATTTCAAAACCCCGACTTGGC
TTCTAAAACAGATTTCTTAACCCACCAGATTCATGAGCACTTTATTGATT
ATGAGTCAATTTCCTACAAAAAGGGTTTTCCAAATTGTGTCGTCTTGGAC
GTTGAGAACAAAGAAATTCATGTCAGTTCGTATTTACTCATAAACAACTC
TCCTGTATTCAAAGCAATGTTGAGTTCGACAAATTTCAAAGAAGGTCAAA
ACAGAAGGATTGAACTTCCTGGCAAGAAATTCAATGAAGTTGTCTACTTC
CTTCAATTTCTACACACACTTCAAGATATTAAAGGTATTTTTGTGTACAA
TACTCTTGAAGTAACTTATCGTTTTTTGAACATTTCCCGACCTTTTTTCG
ACCTTCACAAACAAATTACTTCTATAGTGTCTTTTCTAATCATCAATGAA
TTTAGATTTTCAAAATTTCCTTCTTGTTTTTTACTGTCCGAATTTTCCTA
CCCATTTGTAGATGACACTAATATTTGGGCTCTGGCACCTTTGTGTCAAG
AATATCAAGTGGATTGGCTCTCCAACAAAATAGAGTCCTTCATACGAAAT
TGTGCTACAAACAGAACAAAGACAATTCTCAACTATTTAGTGTTAGCTGA
AGATATGCATTTTGGTATTGAAGTAGAAAGGAGTTTGGTTTCTAAACTCT
TAAGAGGGTTCCAAAATATCAGTATGTGCTTGGAATTTCTCCTACTCAGC
CGTCGAATGCAAGTTTGGATTGCAAGAAGAAAATTAGCTGATTCTTTGAA
GAAGTTTCTGATTGATCCGTACTTTGATACTCTTCCCAGGTATGGCAAGC
AAACAACCCGAGAGAAAAAAGAGGCTGGGATAAAGAAATATAAAGCAGTT
GATGCTGACGTTGTTTCCATATTTCATGATCTAGATCAACCCAAAATGGA
GCTTATAAATGCATAATGGCATACATAATCACAATTTTTTGTTTGTGCCA
GATTCTATTATATTAACTAAAAGTTCTGTTTTATTTACCATGCATTGGGC
TTTTCCAGAAAAAAACCGCACACCCCCTGTTGAGGAGGTCTATCCCTTTA
TGGCTGGAAATGCTGTAAACCCCCTGGAATTCCAGGAAATTTTAGATTTA
AACCCCTCTGAAATTCTTAAATTTAGTAGGATTTAAAAAGCTACCACATG
GAATTCCAGTTATTTTTGACAGATTTTTGTATCTCCCTATGGAATTCCAC
CACATATATCAAACCTTACCCCCTTGGAACGAAAGTGGACCTCCTCAACA
GGGGTTTTTTTTCTGGAAAAACCCATTCTTAAAATGATTCTGTCCCTTTT
TTTGAAAATACTTTTTATTAAATCATTGTGATCATTTTTTAAATAAAAAA
CTTATTGCCTCATTTCTTGCCTTTTTTGGACATTTTTTAAAATTGATGTT
TTTGTTTTTTGTCCATAACTTCTGAACTAATAAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067239-exon-scaffold_466-1575043694:480915..481240 | TCONS_00067239-exon-scaffold_466-1575043694:480915..481240 | Clytia hemisphaerica | exon |
| TCONS_00067239-exon-scaffold_466-1575043694:479914..480574 | TCONS_00067239-exon-scaffold_466-1575043694:479914..480574 | Clytia hemisphaerica | exon |
| TCONS_00067239-exon-scaffold_466-1575043694:478054..479029 | TCONS_00067239-exon-scaffold_466-1575043694:478054..479029 | Clytia hemisphaerica | exon |
| TCONS_00067239-exon-scaffold_466-1510915933:480915..481240 | TCONS_00067239-exon-scaffold_466-1510915933:480915..481240 | Clytia hemisphaerica | exon |
| TCONS_00067239-exon-scaffold_466-1510915933:479914..480574 | TCONS_00067239-exon-scaffold_466-1510915933:479914..480574 | Clytia hemisphaerica | exon |
| TCONS_00067239-exon-scaffold_466-1510915933:478054..479029 | TCONS_00067239-exon-scaffold_466-1510915933:478054..479029 | Clytia hemisphaerica | exon |
| TCONS_00067239-exon-scaffold_466-1491911889:480915..481240 | TCONS_00067239-exon-scaffold_466-1491911889:480915..481240 | Clytia hemisphaerica | exon |
| TCONS_00067239-exon-scaffold_466-1491911889:479914..480574 | TCONS_00067239-exon-scaffold_466-1491911889:479914..480574 | Clytia hemisphaerica | exon |
| TCONS_00067239-exon-scaffold_466-1491911889:478054..479029 | TCONS_00067239-exon-scaffold_466-1491911889:478054..479029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:478054..481240 - |
Blast
The following BLAST results are available for this feature:
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