TCONS_00067233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067233
Unique NameTCONS_00067233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1017

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067233 ID=TCONS_00067233|Name=TCONS_00067233|organism=Clytia hemisphaerica|type=transcript|length=1017bp
ttagattttaattaaataaaaaactctaaaaattatAATGGAAGACTGGC
GTTGTGAAagtaaagtaaaagaaaaatcaatacctttcgaatttgatgaa
aattattgtgacgtcatcattattaCGAAAGACAGAGAAATCCATTTACC
GTCAAGTTTCTTGGTTTCAAATAATGGGGGTCAAATTTTCAGCACAGGAG
CCGAAACAGAAGAATTTTCATCTGAAGACGTTTTAAGGGCGTTATCGTTT
TACTACCCGAAATATTGGACATCCCACATTGAATGTGACGATTTGGACAA
CCTGCTTTCGATTGCAACTACcttcaaaatgacaaaatttcaagtctttC
TAGAGAAACACATACAATCTGACTACTTGAATACTGTACTGACACTGAGT
TTATCAATGATTCCCTGTTAACAGTAGTATTTATTGCTCAAAACACGGTC
TTGATAGcctttttagaaagattttagCTAAAAAGTTACCTTTAAAGAAT
CTATCTCAATTAAAGCAGTTTTNACACTGAGTTTATCAATGATTCCCTGT
TAACAGTAGTATTTATTGCTCAAAAACACGGTCTTGATAGcctttttaga
aagattttagCTAAAAAGTTACCTTTAAAGAATCTATCTCAATTAAAGCA
GTTTTCTTACAAGNAAAACACGGTCTTGATAGcctttttagaaagatttt
agCTAAAAAGTTACCTTTAAAGAATCTATCTCAATTAAAGCAGTTTTCTT
ACAAGATGTTAACAAAGGATGTGCAATTTGAAATTCTAACGTTTACTGTT
TTAAAAGAAGTATTAAGAATGGACAAAACAAAGCTAATGGAAGCTCAAGT
CATTTGTCATTTTCTTAAATTGGTCCAGAACCATGAATTACGCCTGATTG
ATGTTAATGGTGATGCTGCAAATATGTCTTTTGATGTCAATTTACCGTTG
GAAGTCGTTGATCTAGATTCAATATCATGCAGCAAAGATTCGAAAGATTG
TATCACTTTGGTTATCG
Run BLAST on NCBI

protein sequence of TCONS_00067233-protein

>TCONS_00067233-protein ID=TCONS_00067233-protein|Name=TCONS_00067233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MEDWRCESKVKEKSIPFEFDENYCDVIIITKDREIHLPSSFLVSNNGGQI
FSTGAETEEFSSEDVLRALSFYYPKYWTSHIECDDLDNLLSIATTFKMTK
FQVFLEKHIQSDYLNTVLTLSLSMIPC
Run BLAST on NCBI

transcript from alignment at scaffold_466:451787..453585-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067233 ID=TCONS_00067233|Name=TCONS_00067233|organism=Clytia hemisphaerica|type=transcript|length=1799bp|location=Sequence derived from alignment at scaffold_466:451787..453585- (Clytia hemisphaerica)
TTAGATTTTAATTAAATAAAAAACTCTAAAAATTATAATGGAAGACTGGC
GTTGTGAAAGTAAAGTAAAAGAAAAATCAATACCTTTCGAATTTGATGAA
AATTATTGTGACGTCATCATTATTACGAAAGACAGAGAAATCCATTTACC
GTCAAGTTTCTTGGTTTCAAATAATGGGGGTCAAATTTTCAGCACAGGAG
CCGAAACAGAAGAATTTTCATCTGAAGACGTTTTAAGGGCGTTATCGTTT
TACTACCCGAAATATTGGACATCCCACATTGAATGTATGTACCCTCAATT
AACATACCCCTATCGCTTCTTAAGTTTTTTATTTTCCTTCCACCCCCTTG
ACCTTAGGATCAGTAATGTTTAAAAANTCTCAATTAACATAACATAAGTT
TTTGATTTTCCTTCCACCCCCTTGACCTTAGGATCAGTAATGTTTAAAAA
TGTTTTTAGAGGTCAAAATATAAAAAACTTGTTATAATTGGTCCAAACAA
CCTGATTTTAGTTTACATATTTTACATTATGTAATAGTTATCGGACAGTT
GCGAGTAGAATATGAGAAATATTTTACGAGTTCCGAGATTTTTCCGTTCA
ATAATTCCCGAACCTTCAGGCGAGGAAAATATACGGAAAATCCGGAACGA
GTGAAATATTTCCATATTTTACGAGTGGTGATCCAAAAAATGTACTTTTT
GTGTCGGAAAAAGCGCTGGGCACTTCTGTAGCAAAGTGACATTGAATTGC
TTCTACCGCTAAAATGCAACAACATCTATTCGTCAATTTATATTTTTTAC
ATGTAAAGTACAGGATATATTGTACTCTTTTTAACCAATCAGATTGCAGA
AATTTTTCGGATCGCCCTTGTTCAGCCCTTTTCCCTGACTGGGAGTCCCC
CCTTTGATTAGAGTTTAAAAGATTTTTCCAGTGCCCATACACTTATCAAA
TTTGTGTACTGTACTGTTATTTTTTAAATACCAAGTTTGGTTCAATGACA
CTCATATTTATTCAGCTTAATTTCATATCAAATTTCTTCAATTATTAGCT
GTAAACTTTCTTGTAGGTGACGATTTGGACAACCTGCTTTCGATTGCAAC
TACCTTCAAAATGACAAAATTTCAAGTCTTTCTAGAGAAACACATACAAT
CTGACTACTTGAATACTGTACTGACACTGAGTTTATCAATGATTCCCTGT
TAACAGTAGTATTTATTGCTCAAAACACGGTCTTGATAGCCTTTTTAGAA
AGATTTTAGCTAAAAAGTTACCTTTAAAGAATCTATCTCAATTAAAGCAG
TTTTNACACTGAGTTTATCAATGATTCCCTGTTAACAGTAGTATTTATTG
CTCAAAAACACGGTCTTGATAGCCTTTTTAGAAAGATTTTAGCTAAAAAG
TTACCTTTAAAGAATCTATCTCAATTAAAGCAGTTTTCTTACAAGNAAAA
CACGGTCTTGATAGCCTTTTTAGAAAGATTTTAGCTAAAAAGTTACCTTT
AAAGAATCTATCTCAATTAAAGCAGTTTTCTTACAAGATGTTAACAAAGG
ATGTGCAATTTGAAATTCTAACGTTTACTGTTTTAAAAGAAGTATTAAGA
ATGGACAAAACAAAGCTAATGGAAGCTCAAGTCATTTGTCATTTTCTTAA
ATTGGTCCAGAACCATGAATTACGCCTGATTGATGTTAATGGTGATGCTG
CAAATATGTCTTTTGATGTCAATTTACCGTTGGAAGTCGTTGATCTAGAT
TCAATATCATGCAGCAAAGATTCGAAAGATTGTATCACTTTGGTTATCG

Coding sequence (CDS) from alignment at scaffold_466:451787..453585-

>TCONS_00067233 ID=TCONS_00067233|Name=TCONS_00067233|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_466:451787..453585- (Clytia hemisphaerica)
GTGACGATTTGGACAACCTGCTTTCGATTGCAACTACCTTCAAAATGACA
AAATTTCAAGTCTTTCTAGAGAAACACATACAATCTGACTACTTGAATAC
TGTACTGACACTGAGTTTATCAATGATTCCCTGTTAAATGGAAGACTGGC
GTTGTGAAAGTAAAGTAAAAGAAAAATCAATACCTTTCGAATTTGATGAA
AATTATTGTGACGTCATCATTATTACGAAAGACAGAGAAATCCATTTACC
GTCAAGTTTCTTGGTTTCAAATAATGGGGGTCAAATTTTCAGCACAGGAG
CCGAAACAGAAGAATTTTCATCTGAAGACGTTTTAAGGGCGTTATCGTTT
TACTACCCGAAATATTGGACATCCCACATTGAATGTGACGATTTGGACAA
CCTGCTTTCGATTGCAACTACCTTCAAAATGACAAAATTTCAAGTCTTTC
TAGAGAAACACATACAATCTGACTACTTGAATACTGTACTGACACTGAGT
TTATCAATGATTCCCTGTTAAATGGAAGACTGGCGTTGTGAAAGTAAAGT
AAAAGAAAAATCAATACCTTTCGAATTTGATGAAAATTATTGTGACGTCA
TCATTATTACGAAAGACAGAGAAATCCATTTACCGTCAAGTTTCTTGGTT
TCAAATAATGGGGGTCAAATTTTCAGCACAGGAGCCGAAACAGAAGAATT
TTCATCTGAAGACGTTTTAAGGGCGTTATCGTTTTACTACCCGAAATATT
GGACATCCCACATTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042001XLOC_042001Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067233-proteinTCONS_00067233-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067233-exon-scaffold_466-1575043694:453302..453585TCONS_00067233-exon-scaffold_466-1575043694:453302..453585Clytia hemisphaericaexon
TCONS_00067233-exon-scaffold_466-1575043694:451787..452519TCONS_00067233-exon-scaffold_466-1575043694:451787..452519Clytia hemisphaericaexon
TCONS_00067233-exon-scaffold_466-1510915933:453302..453585TCONS_00067233-exon-scaffold_466-1510915933:453302..453585Clytia hemisphaericaexon
TCONS_00067233-exon-scaffold_466-1510915933:451787..452519TCONS_00067233-exon-scaffold_466-1510915933:451787..452519Clytia hemisphaericaexon
TCONS_00067233-exon-scaffold_466-1491911889:453302..453585TCONS_00067233-exon-scaffold_466-1491911889:453302..453585Clytia hemisphaericaexon
TCONS_00067233-exon-scaffold_466-1491911889:451787..452519TCONS_00067233-exon-scaffold_466-1491911889:451787..452519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:451787..453585 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.395173	0.299721	0.348005	0.437745	4.38173	2.90101	2.87899	2.27249	1.03601	0.870791	1.06763	0.614094	0.46723	0.42457	0.997299	1.60538	0.692194	1.18246	0.0933506	0.537265	0.764151	0.496968	1.76205	1.32733	0.42428	0.841465	0.662274	0.257017	1.21836	1.24132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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