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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067223 ID=TCONS_00067223|Name=TCONS_00067223|organism=Clytia hemisphaerica|type=transcript|length=3165bpRun BLAST on NCBI protein sequence of TCONS_00067223-protein >TCONS_00067223-protein ID=TCONS_00067223-protein|Name=TCONS_00067223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=616bp MLANDMSCVFGLMQSRQAHNKKEGEIHFEENHLRDVLKRVDELRQAGQLGRun BLAST on NCBI transcript from alignment at scaffold_466:323219..338388- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067223 ID=TCONS_00067223|Name=TCONS_00067223|organism=Clytia hemisphaerica|type=transcript|length=15170bp|location=Sequence derived from alignment at scaffold_466:323219..338388- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_466:323219..338388- >TCONS_00067223 ID=TCONS_00067223|Name=TCONS_00067223|organism=Clytia hemisphaerica|type=CDS|length=11106bp|location=Sequence derived from alignment at scaffold_466:323219..338388- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067223 vs. Swiss-Prot (Human)
Match: KLHL2 (Kelch-like protein 2 OS=Homo sapiens GN=KLHL2 PE=1 SV=2) HSP 1 Score: 378.252 bits (970), Expect = 1.362e-117 Identity = 199/571 (34.85%), Postives = 326/571 (57.09%), Query Frame = 2
Query: 1175 MQSRQAHNKKEGEIHFEENHLRDVLKRVDELRQAGQLGFCDVILRVSSQEFHAHKLILASCSDYFYAMFNGNMKESKERIVDINGVDVEVMKLVLNFIYTGGIPLSNDNVEDILQAANLMLIKSLKDVCCRFLETLLTVNNCLGMQKFAESYSCEGLFESTTNFICDNFGYITESDEFLQLQAVQLVPIISSDELRVLNEEKVYEALIRWTKYSLSERKKYFPELVQHIRLPMLPPDYLVDQVESESLFVEFPKCKELLVEAHHYLLLPNRRGVMAQTARTRPRKYENNNEILIACGGNGESSMNTTIFSYNMAKSSWNELPRLIPERGYHGLATIDGEMYLVGGITTSRAEGREGQTELLDTVKKFDTEQNAWVNLAALHVKRSKMSVIACSGLIFVVGGFDGSQTLNSVECYNPVNNRWKFVAPMLTHRRCTTSVSNGNFVFIIGGHDGA--QILNTIETYDVERDQWSVSDIAPMSDRRSFPCAVTINDDIYVMGGYDGHDTLRTCEIYNMTRNEWTSIEPMNTARSNAGAAHINRKIFVVGGWDG-VSLNSVEYYDLVTHEWVRVTS 2878
+ S+ + +K + H++ K ++ELR L CDV + E AH+++LA+CS YF+AMF G M ES+ + V I VD ++++++++YT I ++ +NV+ +L AA L+ ++ +K CC FLE+ L NCLG++ FA+ ++C L + +F + S+EFL L Q+ +ISSD+L + +EEKV+EA+I W + R+++ L++H+RLP+LP +YLV +VE E+L CK+ L+EA Y LLP + ++ ++ RTR R N ++++ GG ++ ++ Y+ + W+++ L R G+ + G ++ VGG S + TV +D ++ W ++A + +RS + +GL++ VGGFDGS L+SVE YN +N W VAPM T R G ++ +GG+DGA Q L+T+E Y+ ++W+ IA MS RRS +N+ +Y +GG+DG ++ E+Y+ T N W + MN R NAG +N ++VVGG DG +L SVEYY+ T +W V+S
Sbjct: 19 LDSKDDNTEKHCPVTVNPWHMKKAFKVMNELRSQNLL--CDVTIVAEDMEISAHRVVLAACSPYFHAMFTGEMSESRAKRVRIKEVDGWTLRMLIDYVYTAEIQVTEENVQVLLPAAGLLQLQDVKKTCCEFLESQLHPVNCLGIRAFADMHACTDLLNKANTYAEQHFADVVLSEEFLNLGIEQVCSLISSDKLTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHVRLPLLPREYLVQRVEEEALVKNSSACKDYLIEAMKYHLLPTEQRILMKSVRTRLRTPMNLPKLMVVVGGQAPKAIR-SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLR---------VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDGASRQCLSTVECYNATTNEWTY--IAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSS 575 HSP 2 Score: 129.798 bits (325), Expect = 4.638e-31 Identity = 74/193 (38.34%), Postives = 108/193 (55.96%), Query Frame = 2
Query: 2357 LIFVVGGFDGSQTLNSVECYNPVNNRWKFVAPMLTHRRCTTS-VSNGNFVFIIGGHDGAQILNTIETYDVERDQWSVSDIAPMSDRRSFPCAVTINDDIYVMGGYDGHDTLRTCEIYNMTRNEWTSIEPMNTARSNAGAAHINRKIFVVGGWDGVS---LNSVEYYDLVTHEWVRVTSLPRPTTGIRCGILVN 2923
L+ VVGG + + SVECY+ RW VA L RRC V VF +GG +G+ + T+++YD +DQW+ +A M DRRS A +N +Y +GG+DG L + E YN+ NEW + PMNT RS+ G + ++ VGG+DG S L++VE Y+ T+EW + + +G G+L N
Sbjct: 308 LMVVVGG-QAPKAIRSVECYDFKEERWHQVAE-LPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT--SVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDGASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNN 496 The following BLAST results are available for this feature:
BLAST of TCONS_00067223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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