TCONS_00067205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067205
Unique NameTCONS_00067205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067205 ID=TCONS_00067205|Name=TCONS_00067205|organism=Clytia hemisphaerica|type=transcript|length=1984bp
TATAGTCTTATAGGGGATCATAATAAAAATTATTGCGTTTTGAACGTCAT
TGAAGAAAATGGCTTGCATCGAAGGAAGAGTTCTTGGATTGACAAGTTTC
AGAGCAAATTTGGTCGTTGAGTTTGTCGTCGTCGAAAAGACTAACTCATC
AAGGTCAAACGAATCATCCATTCTAATTGACTTTCAAGACTCTAATTGCA
TAAAAGAACGCCCCAGTCGAACACATTCTTTCTTCAAGATACATACCACG
CGAGAAACATTCGAGGACTTGGTTATCCCGAACTTCAATGTTTGGAGAGA
CGTCAGGAAATCACAAAAGAATGTAGAAGAAAAATGCAATCAAACACAAA
TCCAACAGAGaTTTTGGACCCATTTTTGTGGAGATACAAGATCCGAAAGT
GATATTACCTCGATCACCCAAACTAAGAGAGACGTCAACTTCACTTCAAA
TTCTATACTAAACGAGACAACAAATCACAAATGTTTAACCGTGGTCAGAC
AAATCATGGTACCTACTATGAcaatttcatcaattttattgGGAATCTGG
GTTCGATATGGTCTGAAACATTACGCGAAAGATGCATTGTTATAAACTCA
TTCAGTCCAAGCGCTGTCATTGAAGACATCAACTGTCATCTAACCTGGGT
TTTATGAActattgatttttatgtttctgGTCTCTTGCACTTTTGCACAA
AACTTTGCTGATTTCTCCTgacaacaacaaaatttttaattttttttttg
caaaatgatcctttttatGATGTGCAAATTAGACCAATTTTTTCTACCAT
CAGCCAAActgaagttatttaaaaaacaagttttgctggtAATCCTCTCT
TGATATGATAATGTAGTACATTGATTGAATCACGTTTAGCTTAATTTAGT
ACCGATACCCGCTCGAAATCTCAAAAGGAAGGTATCATGATGAAAATCTT
TCTATTGATATGACAACGTAGGTATTACAATTAACATTGCAGCCAAGTTC
ATCTTTTTCCTCCGTCACAGGAACGAAGTTTAGCCCCCAAAACCTCGTTT
ATTTTAGTTCGCCTGCTGCTCGGAATCTCAAAAGGATGGTTTTATTCGAT
GTTATTGTTGATGATACATGTCGACCCATTTATTGTCATATTCTGCTGCT
TTCTATTCGTTCATTTCAACTTGTGTATTTTTCGACCGTTCGAAATGGTA
TTACTATCGATGTGGCTCTTTTTTATCAAGGTTTTCATGTCCCGTGCTCA
CGCTGGTGTGAAGTAACGTGGACCCCACTGTAGGCTTACTGAGCAACAAG
GGACACGAGGGAGAAgagttttgtttgaaaatgaagatattaTCGCTTTC
GTTCTTCTCTTTTCGAGGTTGGATGATGAATAAGAGTAAGGAGAAGTTGA
AGACAAAGACCATTTTGATCACTTTGTCATCCCCGATCAAGAACGATCCC
ATTCCAAATGGTTGAAATTCTTCTTCATCGTCATCCTCCTCGTCATCATC
CAAGTCGCCGACATCTTCACCGTCATCGGAATCGACGTCGAATTCCTCAT
ATTCGTCGTCATCGACTTCATATTCGTCGTCATCGACTTCATATTCGTGG
TCATCGACTTCAGATTCCTCATAATCATAGTCAATAGAGTCAGTATCGAG
TTCAAAACCGTGCACTAAACGGTATAATTCTTCGCACCACATATTTTCGT
CAGGGTCTTCTTCTACGATTGTTGATCGATATTGATATTCAAAGACATTT
TTCGAATACCATTCTTCTTCAGATGTTTGGAAGAATTGGTTAAGTTTATA
ATCTTCCTCGTTCATACGTTCATTTTCGTCACGTGTTCGACGTCGGCGGG
AGATTCTACTAATCTTATCTTTCATTTCCCTGAGTTTTTGAATTAGTACC
TGGTATCCTTCAATCCTGTATTTTTCCTCGAATTTGCGATGATCAGCGAT
TTCCAATTGGTCGTTAACGTGATGAGCGTCGTGC
Run BLAST on NCBI

transcript from alignment at scaffold_466:435691..439369+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067205 ID=TCONS_00067205|Name=TCONS_00067205|organism=Clytia hemisphaerica|type=transcript|length=3679bp|location=Sequence derived from alignment at scaffold_466:435691..439369+ (Clytia hemisphaerica)
TATAGTCTTATAGGGGATCATAATAAAAATTATTGCGTTTTGAACGTCAT
TGAAGAAAATGGCTTGCATCGAAGGAAGAGTTCTTGGATTGACAAGTTTC
AGAGCAAATTTGGTCGTTGAGGTATTGAAACATTTATATTCCCCTGCCCA
ACAGCCCCGATGGAACTTCTTCCCACAATGGAGATGAAAATTACTAtaga
aatcccaatggggatagaaattctattgtttccccagttaaaaaatccag
tctGCAATTTTTATTTCCATTGAGTTTCGATGGGGACGGAAACAAAGTAA
ATTTTCCAGAGGGtaggggtcccaccgggtcgtGACACAGGGGTTTATTT
ATCATGTTATTCTAGTTTGCCAGCATCCCTCTGAGTTGTTTGGTTATGAC
AATAACTATTCCCAAGACATGCGCGTAGCCGACATATCATTTTATAAAGA
GCGGTTCATCACGAATGAACTTTCCTAACAAAATTTCGATCTAAGTAGGA
ATGAGTACTAAGCTTAATACATATTATTGTATAAGCAACCAGGTATCTAA
CAGTCTAAGCCTCAAATTTGCCGATTTTTTTCACTATCTAGTAAAGTAGT
ACAAAAAATACTAAGCAAGAATAATAATAGGTAGCTAGAAAACTAAGTAA
GCAACTCCGAAAcccaaaaattggaaatcttcaTAAAAAATGTGCAGATG
ATATTTGGTACCTAGGTAAATTGATTTAAATTATCTCACTTTTAACTTCT
ATTTCAGTTTGTCGTCGTCGAAAAGACTAACTCATCAAGGTCAAACGAAT
CATCCATTCTAATTGACTTTCAAGACTCTAATTGCATAAAAGAACGCCCC
AGTCGAACACATTCTTTCTTCAAGGTACGTGAATAGCTGGGGAATAtatt
ctggggaattcgtaaatagtaaactgcatactgatacagtctgctagaca
ttaataaggtaatatttgctcttcatatttgattctttctacagtgatta
gattgacacatgcgcgataaaatttctattattggtcttcagaggttaat
atattctttgaaaacttaacctctgatactcaggatAGGTACGATTCGTT
CCCGAAAAAGGAATTTTCCAACCAAACTCCTCTTCCGTTTTTTAGATACA
TACCACGCGAGAAACATTCGAGGACTTGGTTATCCCGAACTTCAATGTTT
GGAGAGACGTCAGGAAATCACAAAAGAATGTAGAAGAAAAATGCAATCAA
ACACAAATCCAACAGAGGTAAACCTTTTTAAGGCCTTTTAGTCTTTATTG
TGcggaatattttatttttcagagctATGATTACCTTGAAGGATTAAGAA
ACAATTGTaataattttcgttttttagaAACCTTATCACAGACTCGGTGG
GACCCTTCCCCACTATGAAAAGGTTTGTCGAGAAAAACACCCTGAATTCG
GGGGGAAGTGACTGATTTTTTGTGAATCCTCAGAATTTAATATTTCCACC
GGATCACTGAGATAGAAGTGTTTATTATTCCATATAGCACACAAAATCTA
TTTaatattacacccctgtctcacagccccggtgaaacttttccccacag
cggggacaaaaatttctattgaaatctcaatggggatagaaattctattg
ttccaagattaaaaaatccagtggggatggttttggagtgcaatttttaa
gcattgaatttcgaatggggtgaaatcaaagtcaactCCCTAGACTTGTG
AACACGTCTGTTATTACTTTTCGCGCGAGATTTAGAGTTGGGATACTAGT
TAGGTAAAATCttgcctgtaccagacgaccacggctttttcctgGAATTC
TTCGTCCAACTccatgtatggatataaaaagGAATAACCTGATATTCCAT
ATCAATAATAAACCCTCAACAGAGAGGACTCGAACAAGTTGACGCATATA
CATCTATATAGATCTAAAATTGAGACGGTTGGATAACAAATCTTTCCAGA
CATTAAAATAAACGATATGAAGAATATAATATTaccagtttttttcattt
tgtagaTTTTGGACCCATTTTTGTGGAGATACAAGATCCGAAAGTGATAT
TACCTCGATCACCCAAACTAAGAGAGACGTCAACTTCACTTCAAATTCTA
TACTAAACGAGACAACAAATCACAAATGTTTAACCGTGGTCAGACAAATC
ATGGTACCTACTATGAcaatttcatcaattttattgGGAATCTGGGTTCG
ATATGGTCTGAAACATTACGCGAAAGATGCATTGTTATAAACTCATTCAG
TCCAAGCGCTGTCATTGAAGACATCAACTGTCATCTAACCTGGGTTTTAT
GAActattgatttttatgtttctgGTCTCTTGCACTTTTGCACAAAACTT
TGCTGATTTCTCCTgacaacaacaaaatttttaattttttttttgcaaaa
tgatcctttttatGATGTGCAAATTAGACCAATTTTTTCTACCATCAGCC
AAActgaagttatttaaaaaacaagttttgctggtAATCCTCTCTTGATA
TGATAATGTAGTACATTGATTGAATCACGTTTAGCTTAATTTAGTACCGA
TACCCGCTCGAAATCTCAAAAGGAAGGTATCATGATGAAAATCTTTCTAT
TGATATGACAACGTAGGTATTACAATTAACATTGCAGCCAAGTTCATCTT
TTTCCTCCGTCACAGGAACGAAGTTTAGCCCCCAAAACCTCGTTTATTTT
AGTTCGCCTGCTGCTCGGAATCTCAAAAGGATGGTTTTATTCGATGTTAT
TGTTGATGATACATGTCGACCCATTTATTGTCATATTCTGCTGCTTTCTA
TTCGTTCATTTCAACTTGTGTATTTTTCGACCGTTCGAAATGGTATTACT
ATCGATGTGGCTCTTTTTTATCAAGGTTTTCATGTCCCGTGCTCACGCTG
GTGTGAAGTAACGTGGACCCCACTGTAGGCTTACTGAGCAACAAGGGACA
CGAGGGAGAAgagttttgtttgaaaatgaagatattaTCGCTTTCGTTCT
TCTCTTTTCGAGGTTGGATGATGAATAAGAGTAAGGAGAAGTTGAAGACA
AAGACCATTTTGATCACTTTGTCATCCCCGATCAAGAACGATCCCATTCC
AAATGGTTGAAATTCTTCTTCATCGTCATCCTCCTCGTCATCATCCAAGT
CGCCGACATCTTCACCGTCATCGGAATCGACGTCGAATTCCTCATATTCG
TCGTCATCGACTTCATATTCGTCGTCATCGACTTCATATTCGTGGTCATC
GACTTCAGATTCCTCATAATCATAGTCAATAGAGTCAGTATCGAGTTCAA
AACCGTGCACTAAACGGTATAATTCTTCGCACCACATATTTTCGTCAGGG
TCTTCTTCTACGATTGTTGATCGATATTGATATTCAAAGACATTTTTCGA
ATACCATTCTTCTTCAGATGTTTGGAAGAATTGGTTAAGTTTATAATCTT
CCTCGTTCATACGTTCATTTTCGTCACGTGTTCGACGTCGGCGGGAGATT
CTACTAATCTTATCTTTCATTTCCCTGAGTTTTTGAATTAGTACCTGGTA
TCCTTCAATCCTGTATTTTTCCTCGAATTTGCGATGATCAGCGATTTCCA
ATTGGTCGTTAACGTGATGAGCGTCGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041984XLOC_041984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067205-exon-scaffold_466-1491911889:435691..435811TCONS_00067205-exon-scaffold_466-1491911889:435691..435811Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1510915933:435691..435811TCONS_00067205-exon-scaffold_466-1510915933:435691..435811Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1575043694:435691..435811TCONS_00067205-exon-scaffold_466-1575043694:435691..435811Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1491911889:436448..436564TCONS_00067205-exon-scaffold_466-1491911889:436448..436564Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1510915933:436448..436564TCONS_00067205-exon-scaffold_466-1510915933:436448..436564Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1575043694:436448..436564TCONS_00067205-exon-scaffold_466-1575043694:436448..436564Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1491911889:436836..436957TCONS_00067205-exon-scaffold_466-1491911889:436836..436957Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1510915933:436836..436957TCONS_00067205-exon-scaffold_466-1510915933:436836..436957Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1575043694:436836..436957TCONS_00067205-exon-scaffold_466-1575043694:436836..436957Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1491911889:437746..439369TCONS_00067205-exon-scaffold_466-1491911889:437746..439369Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1510915933:437746..439369TCONS_00067205-exon-scaffold_466-1510915933:437746..439369Clytia hemisphaericaexon
TCONS_00067205-exon-scaffold_466-1575043694:437746..439369TCONS_00067205-exon-scaffold_466-1575043694:437746..439369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:435691..439369 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.01702	3.92213	3.55732	4.47495	1.2938	0.788084	0.278091	0.286873	0.303175	0.113652	0.10125	0.0777236	3.07069	3.32699	0.643638	0.953367	2.92588	3.90924	9.89054	11.0501	6.01008	5.76875	5.22961	7.27289	7.59824	8.03244	0.438508	0.321742	0.518117	0.858896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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