Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067204 ID=TCONS_00067204|Name=TCONS_00067204|organism=Clytia hemisphaerica|type=transcript|length=2574bpRun BLAST on NCBI protein sequence of TCONS_00067204-protein >TCONS_00067204-protein ID=TCONS_00067204-protein|Name=TCONS_00067204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp MRRSEEEFKQVVNIEGSANMTMHDADYLPSIEVTDPIVPVSSQPKVHKLERun BLAST on NCBI transcript from alignment at scaffold_466:424821..434325+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067204 ID=TCONS_00067204|Name=TCONS_00067204|organism=Clytia hemisphaerica|type=transcript|length=9505bp|location=Sequence derived from alignment at scaffold_466:424821..434325+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_466:424821..434325+ >TCONS_00067204 ID=TCONS_00067204|Name=TCONS_00067204|organism=Clytia hemisphaerica|type=CDS|length=11184bp|location=Sequence derived from alignment at scaffold_466:424821..434325+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067204 vs. Swiss-Prot (Human)
Match: S38A7 (Putative sodium-coupled neutral amino acid transporter 7 OS=Homo sapiens GN=SLC38A7 PE=1 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 1.086e-52 Identity = 146/390 (37.44%), Postives = 220/390 (56.41%), Query Frame = 2 Query: 446 PEAYKKAGGLQTAITIQLVLLCFIIGAFLIIARACNRYQAPTYQELILGILGPKFFWPLQIIIAIYFFGTAITYMIIIGDQLSPFFQFVT----GESGKWYTNKKVLYTIXXXXXXXXXXXXXXXXXXXYTSXXXXXXXXXXXXXXXYKHFYGGYSNHGPDEYTEVKSDWKSCLGVVPVICFGFQCHVSSVAVYAELKNRSTKRFFICACFAMLVCVLTYSLCGAFGFMTFGRKTKADILQNYDDDDTLVNVARLAVVFILLSSFAIITFCARTVIDDIVVKIRKYNEHDQXXXXXXXXXXXXXXXXXXXXXXXXVVPDIGAAISMIGGLAAFFIFVFPGFCLLKTINLDKIRLTKKD--WALVVVAIMYIAVGIFIFGETTTLAIQTDL 1597 P A+ AGG+ I +Q+ +L FII +I+A TYQE++ + G ++ IA+Y FGT I ++IIIGDQ + G SG WYT++K ++ + LF+LPL +PR + Y SF +G +++T I+I K+ + P + W + +P ICFGFQCHVSSV V+ ++ K + AM++ + Y G GF+TFG D+L +Y +D V VAR ++ +L+S+ I+ FC R V++ + ++ + + + ERRRRV++TL+WF +LLLAL +PDIG IS+IGGLAA FIFVFPG CL++ L ++ K W LV ++ + +G FIFG+TT AI DL Sbjct: 73 PAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTGVLCEVAIAVYTFGTCIAFLIIIGDQQDKIIAVMAKEPEGASGPWYTDRKFTISLTAFLFILPLSIPREIGFQKYASFLSVVGTWYVTAIVIIKYIWPD-KEMTPGNILTRPASWMAVFNAMPTICFGFQCHVSSVPVFNSMQQPEVKTWGGVVTAAMVIALAVYMGTGICGFLTFGAAVDPDVLLSYPSEDMAVAVARAFIILSVLTSYPILHFCGRAVVEGLWLRYQGVPVEEDVGRERRRRVLQTLVWFLLTLLLALFIPDIGKVISVIGGLAACFIFVFPGLCLIQA-KLSEMEEVKPASWWVLVSYGVLLVTLGAFIFGQTTANAIFVDL 460 The following BLAST results are available for this feature:
BLAST of TCONS_00067204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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