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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067134 ID=TCONS_00067134|Name=TCONS_00067134|organism=Clytia hemisphaerica|type=transcript|length=2796bp
TGGGTCATAAAAAAGGCTATTTAGAATAAAAATAGAGCTCAATACTGTTT
GAAACCGTTTTCTCGATGTCTTTAAATGCATCAGTCTAACTCGTGTTAAG
GAGGGTTATCTATTACTAGACTTTTAAGAAATATAATTCTTGACAGTTTC
TGGTTAATTATTGGTGCTAGTTTTTGCTATAATCGATTGGTTGTTATTAT
AGATAATACAACTAAACCAAATTCGATTGTCCTTGATTTGCAGTACCAGA
CAGAACCAACACAAGATATTGCAATGTTTATGAAATCGtctattttgttg
gttttcacGATTTCTTTCTTCGTGCTACCATGGTTTGAAGTGGAGAGTTT
TCCAACACACTCTGAAAATGACGTGGCTCAAAACGATTGCGAGTTAAAGG
ATTGTTCAATGGAGTACTGGGAACCATGGTGTGGAACGGATGGCAAATCT
TACGGCAGCCGATGCAGTATTGAGAACGCAATATGTGACGAAAATGTGGA
TGTCAAGATTAAACATAAAGGACCTTGCCGACattGCTTCGTATATTGCG
GATGATCCATCAAAACACTTAAGGAATTGAGATGGCACTCGATGAAAGac
aaaaaatacttttatattttattaatgTCATTTATTACATTgcagtaatt
ttttttcaattgtcAGCTTATGTGGCAGCTTAGAAGTTGTCTCAGCTAAA
ATTGTCCATATCAATGATAAGATatacgaaaaatattttcaactctttAA
TTCGGGGTCAAATCATTAATAATTCTCATCCGATCGCTTTCTAAAACTTT
ATTGCTTTCATGGTAGCAAGCGTCtgcttataaaaagttattataaaaag
ttaaaaaagggtGGCTGTGGGAGAGTGGTTTGTAAAGCCAGACTAGTCgt
gtatacaccttttcgaccgtagccgccgattgccgcgcgggcatttcttt
gtccgctttatcctaCTAAAACCGCCCCAGtcctttttttcgcacctata
gacaatagaaaaatgtgtcaaaaaaggattggatcgagtttagggatCCC
CTAATTAAAtgattaagtggcacgcgcctgaccgcgcgactacggtcgaa
aaggcgtATTCAGCGAGGTGTATTCAGTAGTGGAATGCAGTGAAATACAA
CGACGAGATTTTTCCGCGAGACATATCttggaatattttttcaaagaaag
aaaaaaaaaccattCAATTTATAAAAGATAAGTTCTTTTGGATTGATCAT
ATCTCATTTATGGTtgatattgtaaaaaatgtatttCATTGAGAAATTTA
TTAATATAATAGTCACAGGTTTAAGCACAGTCAGAGACTGTTAAAAGTAA
TGATATCTCTTTTACTTATTTTCCTCAGGATAAGCACGTCCACCAAAGTA
TATTATTGATTTCCATACACCATGTGATAGCCTCATTTTCTCTCGTAACA
TCTTCTACACTTGACATCCTTACTTAACATGATGCCCACTCGTTTCACTG
CCCACTATTCAACAGGAATAATTTCCTATCGTCATAAATTTTCTCATGTA
ACAGATCACCATTTTCTTCTTGTGAAGTTCTTTCCATTGAAGTAAATCAG
TCACAATTCTTCTTCAGGAAACTCTACAAAACCGACCTATTGAAGATTTG
GTTATTGCTCAAACAGATGTCAATTCTTTACGTTTCTCCCATGATTTCAT
CATAAATCTTCAAATTCATCTAAAGTTTAAGACTTTAATTTAATCTACAG
TTGACGCcctctaattcgacattctaccATTAGATAccctccattattcg
ataatattgaaagttgCCGTCAACAAAAAAAACTCTCACAAACGACGCTC
TaccattcgatacgctcccttattcaatgaaaatccaatAAGCTTTGAAA
ATCcaataagagagcgtcaactgatTGAACTTTTATAAACCACATCCCGA
GTCATCCATTTTACTGGATTGATGTTACCACCAGTGTTGGCAACGATGAA
GTTCTTCTGATATTGTATCGACTACAGCTCCGGTACTTCATAAACATTTC
CTCGTCTCTACCCACCAAATTACTGACACTAGCAGCTGTGGCGGTTGTTT
GGTAATACCCTGTTAAAGGATCTATTGTTTGTGTGCGTTTTCGAGATGTT
TTAGGTGAATTTTTAGCTGACTTTGATTGTGGTGGAGTGTGCGGTTTATG
GTGGTGATAGTGTGGGCTATCATATCCAGTTATGGTGTGCGAACGGCGAT
CCGAACAGGGAGACCGATGCTTCGGGCTATCGTAGCCAGTTACAGTGTGT
GAGCGGCGCTCTGAGCGTGGTGACTTCCCAGATATGCACTCACTAGATCC
TGTATATCCCTTACGTTCTGATCTTGGTGATCTACCGCTTGTGGAGCCAC
AGTGGTTTATATTGGGTGATGAGCCGCCATGTTTTAATCTTTTCTGTACA
TCGAGTTGCTTCTTTGCTTTACCGTATGCATTTGTTAACGCTAATAACGA
TGCCATCTTCACTAATCTGGTAATTTCTCTTCGGCGGCTTTTCTTCTTGA
TGGCGTCACGGACCCGTGAAATAATTTCTCAAATCTATAGTCtctaaaag
taaaaattaaGAACGTTTAAATGTAAATCTTAAACCCAGTTTCCGAGAAG
GAGATATTGTGTGTATAGCCCAACCACTCTATAAGCCCAAATGAAAGAGA
GACTATACAGATCAATGACTTCGTTACAATCTTGCACTGCACCCAactca
aaacaaacaaatttccTAGTGATCAAATTTTCTCCTGTTGTACCAC Run BLAST on NCBI transcript from alignment at scaffold_464:61134..65653+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067134 ID=TCONS_00067134|Name=TCONS_00067134|organism=Clytia hemisphaerica|type=transcript|length=4520bp|location=Sequence derived from alignment at scaffold_464:61134..65653+ (Clytia hemisphaerica)
TGGGTCATAAAAAAGGCTATTTAGAATAAAAATAGAGCTCAATACTGTTT
GAAACCGTTTTCTCGATGTCTTTAAATGCATCAGTCTAACTCGTGTTAAG
GAGGGTTATCTATTACTAGACTTTTAAGAAATATAATTCTTGACAGTTTC
TGGTTAATTATTGGTGCTAGTTTTTGCTATAATCGATTGGTTGTTATTAT
AGATAATACAACTAAACCAAATTCGATTGTCCTTGATTTGCAGTACCAGA
CAGAACCAACACAAGATATTGCAATGTTTATGAAATCGtctattttgttg
gttttcacGATTTCTTTCTTCGTGCTACCATGGTTTGAAGTGGAGAGTTT
TCCAACACACTCTGAAAATGACGTGGCTCAAAACGGTAAGTCATTTTGTT
CGATTCTGTGATGGAACTTACCACATTcacacacaacgttgttccaacgt
tcatctaacgttaaatggacctTGTTAATATTAAATtgacgttgaaagaa
cgttgtgtgccagctgggtttagACAGTTAACTTTTTGCTCTTTTAGGTT
TGACTAAATCTTCTGTCATTGAAGAAAGAATTCTAACTTGAGTCTTCCCC
ATCCCGGTGTTTTCTTCTAGCGAAAGTTTTCCTCCTGTGTTTAGATAGTG
TAAAAAACTTGTGTATAAACTTAATTAGTCAATCACATATTTGAGATGGT
TCAATCAATTATAAACAACTTTTTACAGCTCTTTGGTGCACTCACCACCT
GTGTGGCTGAAGTTCATCCATTTTTGGAAGTCTAAAAATCGCAAGTCTAC
AGTCTACAGACCTTTTGTCCATGTTTGTATTTCCAAAGTCTATCAAACTG
TTTCTCATATGCAGAATTAATTAGGCCAAATGTTGCTTTGCCTGGCCTCC
AGGTTGAATTGAAATCTCGTGTCGGATGGACATCAAAAATGCTACGAATT
TCCTAACGGAATAATAATTCCTTTAATACTACTAGATTGCGAGTTAAAGG
ATTGTTCAATGGAGTACTGGGAACCATGGTGTGGAACGGATGGCAAATCT
TACGGCAGCCGATGCAGTATTGAGAACGCAATATGTGACGAAAATGTGGA
TGTCAAGATTAAACATAAAGGACCTTGCCGACGTATGTGAAACTCAGATG
ATTTAGTAGCTGCGTTCTATTTTTTtaaacccctgtctcagtgaccctgt
TAGAGTATTACATATAGTCATTGGAGATGAAATGAAGGAACTAAATTCCA
AAGAATGGAAAAATGTCCTGCGCTTAGTTTGTAAGGATTTTCAGAAATCC
AGTGAGAATTTTAAAAGCTTCAGTGTCATTCCCAGGTTGACCAATACACC
CCTTTGtcacactccaaaaccatcctcactggattttttcagcttggaac
aatataatctctatgaggccccccagtggtttgcgtgatggcgtgattgg
gacttttttggcgtgatggcttgattggagatttttttggcgtgatggcg
tgatcaagattttggcgtgatgcgtgatagggcaaaaatttgaggcgtga
tacgtgatttgggctatttttcgctatttcttgcgtgatgacaaatttta
gcgattttcgtgatgcgtgatgaagaaatttttttcccgtgatggcgtga
ttaggggtgccacTGGGGGGGGCCTCCTCTATCCCCATTCGGattaaaat
ggaaaattttatcCCCGCCGTGGTAAAAAGTTTTACCGGGGCTGTGAGTG
TGAGACAGATGTTTGCCAATGAGTGTGTATTTTCTCACTGTCACAACTCT
TTAGCTGATTTTTCCAGTAGGTAGCGGTCCCATTAGGCCTGTGACACGgg
ggaattttttcaagtacacgcttctttttttataagaatacactttataa
gaatgttcatgatgaaaatggccagaAAACTAAGAATACGCTAAGAATat
taccatcatggaatttggcaactgaagctaagaatgcAATTTTAAGAGcg
ttttcaattataaattataaattatcctCAAGTAcggccattttatgctt
gagacgtatgtactaaatgttaaatctagtatgaattaggatcctaacct
aaaaaTGTACCGTAAGAATATATATTagaatgattttcccaaaaaagtta
agaatatcaatgatgaaatggatttacaccattcttataaaaaaaaagcg
tgtatatttTCTTGGGCATGAATAAAGTCGAAAGtgtcttttcaattttt
ttctagattGCTTCGTATATTGCGGATGATCCATCAAAACACTTAAGGAA
TTGAGATGGCACTCGATGAAAGacaaaaaatacttttatattttattaat
gTCATTTATTACATTgcagtaattttttttcaattgtcAGCTTATGTGGC
AGCTTAGAAGTTGTCTCAGCTAAAATTGTCCATATCAATGATAAGATata
cgaaaaatattttcaactctttAATTCGGGGTCAAATCATTAATAATTCT
CATCCGATCGCTTTCTAAAACTTTATTGCTTTCATGGTAGCAAGCGTCtg
cttataaaaagttattataaaaagttaaaaaagggtGGCTGTGGGAGAGT
GGTTTGTAAAGCCAGACTAGTCgtgtatacaccttttcgaccgtagccgc
cgattgccgcgcgggcatttctttgtccgctttatcctaCTAAAACCGCC
CCAGtcctttttttcgcacctatagacaatagaaaaatgtgtcaaaaaag
gattggatcgagtttagggatCCCCTAATTAAAtgattaagtggcacgcg
cctgaccgcgcgactacggtcgaaaaggcgtATTCAGCGAGGTGTATTCA
GTAGTGGAATGCAGTGAAATACAACGACGAGATTTTTCCGCGAGACATAT
CttggaatattttttcaaagaaagaaaaaaaaaccattCAATTTATAAAA
GATAAGTTCTTTTGGATTGATCATATCTCATTTATGGTtgatattgtaaa
aaatgtatttCATTGAGAAATTTATTAATATAATAGTCACAGGTTTAAGC
ACAGTCAGAGACTGTTAAAAGTAATGATATCTCTTTTACTTATTTTCCTC
AGGATAAGCACGTCCACCAAAGTATATTATTGATTTCCATACACCATGTG
ATAGCCTCATTTTCTCTCGTAACATCTTCTACACTTGACATCCTTACTTA
ACATGATGCCCACTCGTTTCACTGCCCACTATTCAACAGGAATAATTTCC
TATCGTCATAAATTTTCTCATGTAACAGATCACCATTTTCTTCTTGTGAA
GTTCTTTCCATTGAAGTAAATCAGTCACAATTCTTCTTCAGGAAACTCTA
CAAAACCGACCTATTGAAGATTTGGTTATTGCTCAAACAGATGTCAATTC
TTTACGTTTCTCCCATGATTTCATCATAAATCTTCAAATTCATCTAAAGT
TTAAGACTTTAATTTAATCTACAGTTGACGCcctctaattcgacattcta
ccATTAGATAccctccattattcgataatattgaaagttgCCGTCAACAA
AAAAAACTCTCACAAACGACGCTCTaccattcgatacgctcccttattca
atgaaaatccaatAAGCTTTGAAAATCcaataagagagcgtcaactgatT
GAACTTTTATAAACCACATCCCGAGTCATCCATTTTACTGGATTGATGTT
ACCACCAGTGTTGGCAACGATGAAGTTCTTCTGATATTGTATCGACTACA
GCTCCGGTACTTCATAAACATTTCCTCGTCTCTACCCACCAAATTACTGA
CACTAGCAGCTGTGGCGGTTGTTTGGTAATACCCTGTTAAAGGATCTATT
GTTTGTGTGCGTTTTCGAGATGTTTTAGGTGAATTTTTAGCTGACTTTGA
TTGTGGTGGAGTGTGCGGTTTATGGTGGTGATAGTGTGGGCTATCATATC
CAGTTATGGTGTGCGAACGGCGATCCGAACAGGGAGACCGATGCTTCGGG
CTATCGTAGCCAGTTACAGTGTGTGAGCGGCGCTCTGAGCGTGGTGACTT
CCCAGATATGCACTCACTAGATCCTGTATATCCCTTACGTTCTGATCTTG
GTGATCTACCGCTTGTGGAGCCACAGTGGTTTATATTGGGTGATGAGCCG
CCATGTTTTAATCTTTTCTGTACATCGAGTTGCTTCTTTGCTTTACCGTA
TGCATTTGTTAACGCTAATAACGATGCCATCTTCACTAATCTGGTAATTT
CTCTTCGGCGGCTTTTCTTCTTGATGGCGTCACGGACCCGTGAAATAATT
TCTCAAATCTATAGTCtctaaaagtaaaaattaaGAACGTTTAAATGTAA
ATCTTAAACCCAGTTTCCGAGAAGGAGATATTGTGTGTATAGCCCAACCA
CTCTATAAGCCCAAATGAAAGAGAGACTATACAGATCAATGACTTCGTTA
CAATCTTGCACTGCACCCAactcaaaacaaacaaatttccTAGTGATCAA
ATTTTCTCCTGTTGTACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067134-exon-scaffold_464-1491911889:61134..61518 | TCONS_00067134-exon-scaffold_464-1491911889:61134..61518 | Clytia hemisphaerica | exon |
| TCONS_00067134-exon-scaffold_464-1510915933:61134..61518 | TCONS_00067134-exon-scaffold_464-1510915933:61134..61518 | Clytia hemisphaerica | exon |
| TCONS_00067134-exon-scaffold_464-1575043694:61134..61518 | TCONS_00067134-exon-scaffold_464-1575043694:61134..61518 | Clytia hemisphaerica | exon |
| TCONS_00067134-exon-scaffold_464-1491911889:62119..62265 | TCONS_00067134-exon-scaffold_464-1491911889:62119..62265 | Clytia hemisphaerica | exon |
| TCONS_00067134-exon-scaffold_464-1510915933:62119..62265 | TCONS_00067134-exon-scaffold_464-1510915933:62119..62265 | Clytia hemisphaerica | exon |
| TCONS_00067134-exon-scaffold_464-1575043694:62119..62265 | TCONS_00067134-exon-scaffold_464-1575043694:62119..62265 | Clytia hemisphaerica | exon |
| TCONS_00067134-exon-scaffold_464-1491911889:63390..65653 | TCONS_00067134-exon-scaffold_464-1491911889:63390..65653 | Clytia hemisphaerica | exon |
| TCONS_00067134-exon-scaffold_464-1510915933:63390..65653 | TCONS_00067134-exon-scaffold_464-1510915933:63390..65653 | Clytia hemisphaerica | exon |
| TCONS_00067134-exon-scaffold_464-1575043694:63390..65653 | TCONS_00067134-exon-scaffold_464-1575043694:63390..65653 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_464 | supercontig | scaffold_464:61134..65653 + |
Blast
The following BLAST results are available for this feature:
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