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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067094 ID=TCONS_00067094|Name=TCONS_00067094|organism=Clytia hemisphaerica|type=transcript|length=3622bpRun BLAST on NCBI protein sequence of TCONS_00067094-protein >TCONS_00067094-protein ID=TCONS_00067094-protein|Name=TCONS_00067094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=788bp MPDGKVCPDQFRGFLWKWTNYIKGYQKRWCVLSNGLLSYYRNPAEMNHTCRun BLAST on NCBI transcript from alignment at scaffold_463:22891..44926- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067094 ID=TCONS_00067094|Name=TCONS_00067094|organism=Clytia hemisphaerica|type=transcript|length=22036bp|location=Sequence derived from alignment at scaffold_463:22891..44926- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_463:22891..44926- >TCONS_00067094 ID=TCONS_00067094|Name=TCONS_00067094|organism=Clytia hemisphaerica|type=CDS|length=26037bp|location=Sequence derived from alignment at scaffold_463:22891..44926- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067094 vs. Swiss-Prot (Human)
Match: OSBP2 (Oxysterol-binding protein 2 OS=Homo sapiens GN=OSBP2 PE=1 SV=2) HSP 1 Score: 462.996 bits (1190), Expect = 2.828e-144 Identity = 227/421 (53.92%), Postives = 297/421 (70.55%), Query Frame = 2
Query: 1214 SKVIVYRKRIPDRPNANLNLWSIMKNCIGKELSKIPMPVNFSEPLSMTQRLTEELEYSELLDKAATCQTSIEQICYIAAFSISCYASTAIRTGKPFNPLLGETYELDRTNDKGWTSLAEQVSHHPPSLAHHAEGR-GWTLWQNFTMSSKFRGKYLLVTPLGTAHCKFAKTGDHYTWKKVTTTVNNIIVGKLWIDQSGDMEIKNHLTGEKCVLKYHAYSYFSRDTPKKVTGFVADKNNVTRYVLSGTWDQKVEIAKMVYKEPNAALS-GKQPQGMPTSKSSNPQMLPSQLLWTKIPPVPGAKLMYHFGEFTCSLNQEAEGIAITDSRLRPDLRLMEQQNFDDANKIKQQLEELQRVRRKLREQEA----ESASDEGRVYEGYKPRWFEQINDEYMDGKIFIYKGGYWEAKEKNDWSTCPKIY 2458
S + R RIP++PN +LNLWSIMKNCIG+ELS+IPMPVNF+EPLSM QRLTE+LEY LLDKA C +S+EQ+C +AAFS+S Y++T R KPFNP+LGET+ELDR +D G SL EQVSHHPPS AH+ + GW+LWQ T+SSKFRGKY+ + PLG H +F +G+HY W+K T+TV+NIIVGKLWIDQSGD+EI NH T ++C LK+ YSYFS++ +KVTG V+D YVLSG+WD+++E +K+++ P++ S GKQ + Q L ++LLW K P A+ MY+F E +LN+ EG+A TDSRLRPD RLME+ +D+AN KQ+LEE QR+ R+ R + +S+E + + Y P WFE+ D +YKGGYWEAKEK DW CP I+
Sbjct: 504 SSKVKRRVRIPNKPNYSLNLWSIMKNCIGRELSRIPMPVNFNEPLSMLQRLTEDLEYHHLLDKAVHCTSSVEQMCLVAAFSVSSYSTTVHRIAKPFNPMLGETFELDRLDDMGLRSLCEQVSHHPPSAAHYVFSKHGWSLWQEITISSKFRGKYISIMPLGAIHLEFQASGNHYVWRKSTSTVHNIIVGKLWIDQSGDIEIVNHKTNDRCQLKFLPYSYFSKEAARKVTGVVSDSQGKAHYVLSGSWDEQMECSKVMHSSPSSPSSDGKQ--------KTVYQTLSAKLLWKKYPLPENAENMYYFSELALTLNEHEEGVAPTDSRLRPDQRLMEKGRWDEANTEKQRLEEKQRLSRRRRLEACGPGSSCSSEEEKEADAYTPLWFEKRLDPLTGEMACVYKGGYWEAKEKQDWHMCPNIF 916 HSP 2 Score: 246.128 bits (627), Expect = 1.614e-67 Identity = 119/241 (49.38%), Postives = 165/241 (68.46%), Query Frame = 2
Query: 131 DQFRGFLWKWTNYIKGYQKRWCVLSNGLLSYYRNPAEMNHTCRGTINLAGAFIDTVDSCSFAINGGSQVWHLRAGSEIERQRWVTALELAKAKAIK-----------NXXXXXXXXXXXXXXXXXXXGAKLEDLTTCNSLVTSHGSLLQKTISDFSDNKETQETSQHLKHVNEKAQMFRITSNAMVNACSDFMELAKTYEKKFNKLLTAERSKRMRLEETVETLAKQHMRLERACEKEKGK 820
D F G+L KWTNY+KGYQ+RW VL NGLLSYYRN EM HTCRGTINL+ A IDT DSC + G++ +HL+A SE++RQ+W+TALELAKAKA++ + + ++K++ KL+DL+TCN L+ HG+ LQ+++++ K E+ + LK VNE+A +FRITSNAM+NAC DF+ELA+ + +K+ + L E+ +R+ LEET+E LAKQH LERA G+
Sbjct: 183 DSFEGWLLKWTNYLKGYQRRWFVLGNGLLSYYRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQQWITALELAKAKAVRVMNTHSDDSGDDDEATTPADKSELHHTLKNLSLKLDDLSTCNDLIAKHGAALQRSLTELDGLKIPSESGEKLKVVNERATLFRITSNAMINACRDFLELAEIHSRKWQRALQYEQEQRVHLEETIEQLAKQHNSLERAFHSAPGR 423 The following BLAST results are available for this feature:
BLAST of TCONS_00067094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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