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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067007 ID=TCONS_00067007|Name=TCONS_00067007|organism=Clytia hemisphaerica|type=transcript|length=3229bp tgtatcaaaattttgacgaaaatcttttatttttgaatacaattttatcg ttttgttttgatttttaagagAATTGACATTTAATCGGAGAAAAGGGAGC ATATACATTTTCCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTACTCC TACTTGTGGCTTTGATCGATTGTCGGGCTATCAAAAAAGGGAAAGATCAC AAAAAGTCTTCAAAGTTATCACATCATGCTCGTAAATTTGCTACCGAAGC CTCGAAAAGTATTTATCAGCATGCGCTAGACGAAACTAAAAAAGACTTGG GAGAGGCGATAGATAGTGCAGTTCAAGCATATACTGAACAGACTATTGGA GgtCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACATCTTCAGAGGA CCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTTAGCTGAGCAAA ACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAGGCCATGTTCCA CAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAGAAAGTTCAAGA tgataagaaaaacaaaaacaaaaacaaacaagacAATAAGCAGTCATATG CTGCAGGAACTTCCGATTCAGAAAATTCAGAGGAAGCACCTGATGAAGCT GAGGCACCACCACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCACCACC TCCAGGAGGTGCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAACTACTC CAGCACCACCTCCTGCTGGTGATGATGATGACAGTGATGATAGCGATGAT GATGCTCAGCCACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCC TCCTCCAGGTGGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCCTCCAG GCGGTGCCCCTCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCT CCCCCACCACCAGCAGGAAAGAAACCACCAACAGAAGCCAAATCTGACGG AGATGATCAAGAAGATTTGAAAGCCTTACTAGATGAAAGTATTGgaTCAT CTAGTGGACCCTCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCT CCTCCTCCAGGCGGTGCCCCTCCACCCCCAGGCGGTGCCCCTCCACCAGG TGGTGCTCCTCCTCCAGGCGGTGCCCCTCCACCACCAGGTGGCGCCCCTC CCACTGAGGCTAAACCAGATGAGGCTGCTGGTGCTCCTCCCCCTCCTGGT GGTGCCGGTGGCGCTCCTGGAGCAGCAGGTGGCAAAGGTGGAGACTGCAC TGGTTGCGAAAACCCATACTGCTGTGCCGAACCCTTTGGAGCTAGCTCAA CTGTCATTCATTTCCCAGCACCGCCATGTGCATGTGCTCCCCCACCACCA CCTTGTATGGCAATGCCATGTCCACCACCCCCTCCTCCATGCCCTNNNNN NNNNNNNNNNNNNNNNACCATGTCCTGCACCTTGTCCAGTAGCATGTGCa cctccaccaccaccacctTGTGCACCAGCCTGTATGCCCCCAGCTTGTGG ACCAACCTGCAGTCGCGATTGTTGTGAGTGGGATCAAGTCGTACCATCAG GTGCATTGGCAGGGGCCCTCGCTAACTATGCTAAAGATCATGGCAAATAA ATTGGACGAAACAGACATTCTTTAATATTCCTATCCTAAACACAATGTAC ATTAATATTTTCCTTTCACACTTGCATGTTTATATTTTatgacaaagttt tttttctgtttataaTTTGACCGAAATGAATAATTTTAGAGACGAAACCA AAAAAGGTTAATGGTGATAGTGGGTGCAGTGGTGTGTTTTCTACTTTCGT ATAATTTGTCTATGATCGCTAACTGAATCACAATGACACACAAACACACA CGCTTAAACCAAGCAAATGTTTATTTTGTCATTTAGGTTTACCACTGCCT CCACTATCACCATTTCCATGCAGTACTTGTACTATAATATGTTTACCTGG CTGTGATACAACTTGTTGTCATGGGGgtaacaagaaaaataaaactttca atGCTAAACTACATCATCGTAAAAAGACACGGCATCATGATAGAAAATCT CATAAAGGATATATTTCCGATGATGATAAAAGACATAACGATAATAACAA TATGGTTGCCCCTACCATGCCTTCATTGCCTTTATCCAGATTTGTAGTGG CCCCAACAATGCCTGCACCACCGACTGTATGTTGTGACAAAGACCATCCT GTAATCTTGAACTGTGATATCCCACCATGCCAACCGACCAATTGCATCTA TTGTTATAATCCTGGTTCACCGGTCGTCGGGAATAGCCTAATTATACCGA ATGCAGGCTGAAAGAGGATAATTTGTACATGGGATATTTACGTAGAGGAG CTGATGTATATTCATGTATAACTAACATTATAACTGATGCATGTCCATCA TATCCAACCTTATGTCGTCATGGAGACGAACCGTTCGTTCTGAGCATGCG CACATGAACGTGAATTGTGACTCTATGGATAACTATCTACGGATGAACTA ACTACAACATAATTATCGTATATCATAGTTTTGTTATCGAATCTTTTGCT AAATGGCCAGTTAGTTCTATAGTTGGCGCATATATTACTTTTAAGCAAAG TAGGGCCTAGTTGGTGACATAAAGGCTTTTCTTTAGAACACGTTGACtac acagatatctgtaaagcccgaagggctagataggcaactttaagctttct ccacagcaaaaaaaagtgaagcaaaaatttgactttttaaatttcgtgcc gatggataggatctagcattttaattgtttttggagcgcgagatcaaaaa agtaggcggcaaacgctatttcacatctctcaaaccggtggaATTGCATA TTTTactcacgtgactttggtaggaaatccttccaaatctaggcttcact tttcgataaaagctgcgaatctagcccttcgggctttacagatctgtggt tgACTActgattttttattgaaaaattgacaaGAAATCTTTAAGAACAAG CTTTGTACTTAAGGAAAGCCTTCTAGTTAAAGACTTTGCTCAGCGAAAAT TTAGTATAGTTTTGTTACTAGATAATGACACTTTTAGGACAATTTTCATA TTTATAAAAGATACAAATATAAGGCATTTACACTTATGtcttgaatgaaa atttaacataatttttggataaaatattc Run BLAST on NCBI transcript from alignment at scaffold_462:878768..884815- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067007 ID=TCONS_00067007|Name=TCONS_00067007|organism=Clytia hemisphaerica|type=transcript|length=6048bp|location=Sequence derived from alignment at scaffold_462:878768..884815- (Clytia hemisphaerica) TGTATCAAAATTTTGACGAAAATCTTTTATTTTTGAATACAATTTTATCG
TTTTGTTTTGATTTTTAAGAGAATTGACATTTAATCGGAGAAAAGGGAGC
ATATACATTTTCCAGGTGAGTAAACCATTTACTACCAATTTGATAGATTT
TGTTCTTTTGATAAATTGGACTCGTATTTTAATCATTATTTGGCTTTGCT
TGATTGAAAAAGTGATTTTTTCAGGAGCATCTTAAGAAATATTATTGCAA
TCGTTAAAAGATAATGATATGTTTTGTTTGTTTAATGATATTTTGAATTG
GATATTTGCTATTGAGCACCTGGCTGACTGCTTTCTCGCTATTCAAATTG
TTACAAATTAAAAAAAGAATCATTAGAAACCCCATAACTCGAACACGCAA
CCTAAATATTTTATTTGAGTGATACACGGTGAATCTACCATTGAGTTTAA
AGCCCCGAAGAAATTAAAATTGAAACTTTTGGATGGGAAATGAAGTCACT
TAGTGTCTATCTGAAACGTGTAACCTGCGTGGTTTTCACATAAACGCCAG
AGTGAAAGAAATATTCATCGCTAGATTTCGAAAAATACGCCACGTGAAAA
CAAAGAAAGCACTAGATTCAATCCGTTATTCTGAATACGCAAATCTTTAA
TGCTTTACTTTTTCTTGCTTGAGAAGGGCTGAAGATTTTTCTTAGAGCCC
TTTGAGCCTTAAACTCAATGTACCCATTGTACTCTGTCACATATTCTTGT
CGCTATTAAATTTTAATTGTCTTTCTTTCTTTTCATTCAGCATGAAAGCT
CTTCACGTGGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATTGTCG
GGCTATCAAAAAAGGTATACTTTTATTCAATGTTTTTTACCTAGCTAAGG
AATCTTCCTGAATTTTCAATGCAATGAAAGTAGAAAGAGCATCCCTTCTC
GGTTACCTTTTCATGTTGTAATGATCCTTCTTTGTTATGTTTTTCGCTAA
ATTCGTCTTCACTGTCGATGCATAAAATTTCATTTACCTTATGGGGAGGA
AAATAGTCATGATTTATCTATTTATTTCGGTCTCGATTATTTGGCCCCGA
TTCTTTGGCGCCTTTTCATAAATTATCTTGAGTGCAACGACTGCCTCGTT
TTGAAACCATTGTCAAGGTGACTAAATTCCTTGGGTCTTCGAGTGCTACT
TTCTATAAGTAGAGTAAACTTCTTATGAACTCCTCTGGGAATCAATTACC
ACAGTAATATTTTGAAAACGAGGAGTTGCTAGTGACGTAATTTATGGAAA
GGTTTTATAAAAGTAAATATTTTCTGTGTTTGCATGATTTTAAGACAAAT
TCTACAGCTTGATTTTGTTTTGGCTAGGTGTTATTTTCTTCTCTCCTAAT
ACTGTATATGATTATATGTACGGCCTTGCCCCCCATTCTTTGCTTACAAT
ATATGCACGACCTAATCATCCAAGTTAAAACTGCAATGCATGAGACAGTA
TCAAATTAAAATAGTCTAGAGTAATCTTAGACCAATTCTAGTCAGGCGTG
ATGTGTGAACTTAAGGGATTTTTCGAAATAAAGAATAAAGCAATTTCGGA
ACAAATTTTGAAAAAAAACTTTTTTGAAATTTTTGAATAATTCCCTTTAC
TTTTTTAGGGAAAGATCACAAAAAGTCTTCAAAGTTATCACATCATGCTC
GTAAATTTGCTACCGAAGCCTCGAAAAGTATTTATCAGCATGCGCTAGAC
GAAACTAAAAAAGACTTGGGAGAGGCGATAGATAGTGCAGTTCAAGCATA
TACTGAACAGACTATTGGAGGTAGGATACATACAAGGCTAACAAAGTGAA
CTTCGCCATATTTTAGAATACCTGCGACTCACAACCCCAACCCCCCGGTC
ACGAGTCCCTGATGTAACTCACTGGAAATAAATGGAACCTTTTCCCAATT
ATTACAATAGATAACATCCTGTTCAAAGAATGAATGTTCTATCCCATTTC
ATAATGTGCTTCTCATTGTAAATCCACTCTCCATACATTTAACGAGATGT
ACATACCCCTAGACTCGTCATTTTTGAGCATTTTCACAAAGACAATTTTT
ACATAGAGATGACCTAGAATAGATTTGCATGTCTTACAACAACAACAACA
CATCTACTGTAGAAAAATGCCAAAAATAACTTGTATCGCGCATGTATCGT
CATTTAACCAAACGCATTATAAACAGGATTTAGCTGAACAATCTAAAAAA
GCAAACACTTTCTTACACCATCAACTCCATTATTCGACCAAACTTCTTCA
TTTTTCAAAGGTCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACATC
TTCAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTTAG
CTGAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAGGC
CATGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAGAA
AGTTCAAGATGATAAGAAAAACAAAAACAAAAACAAACAAGACAATAAGC
AGTCATATGCTGCAGGAACTTGTAAGTTAATAAAATTCCTTTCCTTCAGC
AGTGTAACCCTTTCATAAATTTAAGTTTGGTTAAACCCTTCTTAAACTAA
TTTTTCAAGATTGTGCTTTTCTCAGATGCTTTTTTATACTTTGAGATAGT
TCTGTTAGTTTTAAACTTCGTAGATTAAAGTGTTACGATTGATGAAATTG
AGATTCAGTGTAGTTTTGACATCTTTCATTCCCTTTAGCCGATTCAGAAA
ATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCACCACCAGGAGGTGCC
CCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGTGCTCAGCCACCTCC
TGCTGGAGGGCAGCCCACAACTACTCCAGCACCACCTCCTGCTGGTGATG
ATGATGACAGTGATGATAGCGATGATGATGCTCAGCCACCTGAACAAAAA
CCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTCCTCCACC
ACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCCACCACCAGGTG
GTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCACCAGCAGGAAAGAAA
CCACCAACAGAAGCCAAATCTGACGGAGATGATCAAGAAGATTTGAAAGC
CTTACTAGATGAAAGTATTGGTAAGATGTCCAGCCATTCACAACGAATTC
TAAAATAAAGACTGGAATGGAAAAGGAAACGATCTAGAACGTTGAAGATC
CGAAAAACCGGATTTTCTTCAAGGTTGAAGAGATTCTTTCAGATGTCAAA
TAATGGCTGCTGCAGATATGGAAATTTGGAAACCTCGTTAAAAAATCAGA
TTCCCAATTCCAGTCTTAATTTTGGAGTTCGTTGATCAAATCAGTTAAAT
CTAAAAGTTATTCAAAAATAAAATCTCGATGCATCAAAAGCTAATAGATT
CTAATTAGTCACTTTTGAGTATCACTTCAATATTCAAATAGGTCAAAAAA
CCTCCTTTTCTTTCTTTTCATCTATTTAGGAAACTTAGTCAAAGCAAATC
AAGCTGTAGAAACACTCTTATCTGCCAGCAGTGGAGGTAAGAGCTTTTTA
CCGTTTTCTTCTCATGCCAATACTGCACCCACTAAACCAGGAATTTCCTC
ATCTTATCTTTGTAATTATTTTTACTTTTAGGATCATCTAGTGGACCCTC
TCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCTCCAGGCG
GTGCCCCTCCACCCCCAGGTGGCGTTCCTCCTCCAGGCGGTGCCCCTCCT
CCAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCTCCTCCAGGTGGTGCCCC
TCCACCCCCAGGTGGTGCCCCTCCACCCCCAGGCGGTGCCCCTCCTCCAG
GCGGTGCCCCTCCACCAGGTGGTGCTCCTCCTCCAGGCGGTGCCCCTCCA
CCACCAGGTGGCGCCCCTCCCACTGAGGCTAAACCAGATGAGGCTGCTGG
TGCTCCTCCCCCTCCTGGTGGTGCCGGTGGCGCTCCTGGAGCAGCAGGTG
GCAAAGGTGGAGACTGCACTGGTTGCGAAAACCCATACTGCTGTGCCGAA
CCCTTTGGAGCTAGCTCAACTGTCATTCATTTCCCAGCACCGCCATGTGC
ATGTGCTCCCCCACCACCACCTTGTATGGCAATGCCATGTCCACCACCCC
CTCCTCCATGCCCTNNNNNNNNNNNNNNNNNNNNNACCATGTCCTGCACC
TTGTCCAGTAGCATGTGCACCTCCACCACCACCACCTTGTGCACCAGCCT
GTATGCCCCCAGCTTGTGGACCAACCTGCAGTCGCGATTGTTGTGAGTGG
GATCAAGTCGTACCATCAGGTGCATTGGCAGGGGCCCTCGCTAACTATGC
TAAAGATCATGGCAAATAAATTGGACGAAACAGACATTCTTTAATATTCC
TATCCTAAACACAATGTACATTAATATTTTCCTTTCACACTTGCATGTTT
ATATTTTATGACAAAGTTTTTTTTCTGTTTATAATTTGACCGAAATGAAT
AATTTTAGAGACGAAACCAAAAAAGGTTAATGGTGATAGTGGGTGCAGTG
GTGTGTTTTCTACTTTCGTATAATTTGTCTATGATCGCTAACTGAATCAC
AATGACACACAAACACACACGCTTAAACCAAGCAAATGTTTATTTTGTCA
TTTAGGTTTACCACTGCCTCCACTATCACCATTTCCATGCAGTACTTGTA
CTATAATATGTTTACCTGGCTGTGATACAACTTGTTGTCATGGGGGTAAC
AAGAAAAATAAAACTTTCAATGCTAAACTACATCATCGTAAAAAGACACG
GCATCATGATAGAAAATCTCATAAAGGATATATTTCCGATGATGATAAAA
GACATAACGATAATAACAATATGGTTGCCCCTACCATGCCTTCATTGCCT
TTATCCAGATTTGTAGTGGCCCCAACAATGCCTGCACCACCGACTGTATG
TTGTGACAAAGACCATCCTGTAATCTTGAACTGTGATATCCCACCATGCC
AACCGACCAATTGCATCTATTGTTATAATCCTGGTTCACCGGTCGTCGGG
AATAGCCTAATTATACCGAATGCAGGCTGAAAGAGGATAATTTGTACATG
GGATATTTACGTAGAGGAGCTGATGTATATTCATGTATAACTAACATTAT
AACTGATGCATGTCCATCATATCCAACCTTATGTCGTCATGGAGACGAAC
CGTTCGTTCTGAGCATGCGCACATGAACGTGAATTGTGACTCTATGGATA
ACTATCTACGGATGAACTAACTACAACATAATTATCGTATATCATAGTTT
TGTTATCGAATCTTTTGCTAAATGGCCAGTTAGTTCTATAGTTGGCGCAT
ATATTACTTTTAAGCAAAGTAGGGCCTAGTTGGTGACATAAAGGCTTTTC
TTTAGAACACGTTGACTACACAGATATCTGTAAAGCCCGAAGGGCTAGAT
AGGCAACTTTAAGCTTTCTCCACAGCAAAAAAAAGTGAAGCAAAAATTTG
ACTTTTTAAATTTCGTGCCGATGGATAGGATCTAGCATTTTAATTGTTTT
TGGAGCGCGAGATCAAAAAAGTAGGCGGCAAACGCTATTTCACATCTCTC
AAACCGGTGGAATTGCATATTTTACTCACGTGACTTTGGTAGGAAATCCT
TCCAAATCTAGGCTTCACTTTTCGATAAAAGCTGCGAATCTAGCCCTTCG
GGCTTTACAGATCTGTGGTTGACTACTGATTTTTTATTGAAAAATTGACA
AGAAATCTTTAAGAACAAGCTTTGTACTTAAGGAAAGCCTTCTAGTTAAA
GACTTTGCTCAGCGAAAATTTAGTATAGTTTTGTTACTAGATAATGACAC
TTTTAGGACAATTTTCATATTTATAAAAGATACAAATATAAGGCATTTAC
ACTTATGTCTTGAATGAAAATTTAACATAATTTTTGGATAAAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067007-exon-scaffold_462-1575043694:884701..884815 | TCONS_00067007-exon-scaffold_462-1575043694:884701..884815 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1575043694:883952..884025 | TCONS_00067007-exon-scaffold_462-1575043694:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1575043694:882996..883157 | TCONS_00067007-exon-scaffold_462-1575043694:882996..883157 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1575043694:882245..882505 | TCONS_00067007-exon-scaffold_462-1575043694:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1575043694:881596..882027 | TCONS_00067007-exon-scaffold_462-1575043694:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1575043694:880998..881084 | TCONS_00067007-exon-scaffold_462-1575043694:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1575043694:878768..880865 | TCONS_00067007-exon-scaffold_462-1575043694:878768..880865 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1510915933:884701..884815 | TCONS_00067007-exon-scaffold_462-1510915933:884701..884815 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1510915933:883952..884025 | TCONS_00067007-exon-scaffold_462-1510915933:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1510915933:882996..883157 | TCONS_00067007-exon-scaffold_462-1510915933:882996..883157 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1510915933:882245..882505 | TCONS_00067007-exon-scaffold_462-1510915933:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1510915933:881596..882027 | TCONS_00067007-exon-scaffold_462-1510915933:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1510915933:880998..881084 | TCONS_00067007-exon-scaffold_462-1510915933:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1510915933:878768..880865 | TCONS_00067007-exon-scaffold_462-1510915933:878768..880865 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1491911889:884701..884815 | TCONS_00067007-exon-scaffold_462-1491911889:884701..884815 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1491911889:883952..884025 | TCONS_00067007-exon-scaffold_462-1491911889:883952..884025 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1491911889:882996..883157 | TCONS_00067007-exon-scaffold_462-1491911889:882996..883157 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1491911889:882245..882505 | TCONS_00067007-exon-scaffold_462-1491911889:882245..882505 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1491911889:881596..882027 | TCONS_00067007-exon-scaffold_462-1491911889:881596..882027 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1491911889:880998..881084 | TCONS_00067007-exon-scaffold_462-1491911889:880998..881084 | Clytia hemisphaerica | exon |
TCONS_00067007-exon-scaffold_462-1491911889:878768..880865 | TCONS_00067007-exon-scaffold_462-1491911889:878768..880865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_462 | supercontig | scaffold_462:878768..884815 - |
Blast
The following BLAST results are available for this feature:
|