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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066988 ID=TCONS_00066988|Name=TCONS_00066988|organism=Clytia hemisphaerica|type=transcript|length=2750bpRun BLAST on NCBI protein sequence of TCONS_00066988-protein >TCONS_00066988-protein ID=TCONS_00066988-protein|Name=TCONS_00066988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp MADRKAELDRKKKRLEEIRAQRNKNKPSAAASTSTSSPVHSSPKHGADATRun BLAST on NCBI transcript from alignment at scaffold_462:578756..613868- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066988 ID=TCONS_00066988|Name=TCONS_00066988|organism=Clytia hemisphaerica|type=transcript|length=35113bp|location=Sequence derived from alignment at scaffold_462:578756..613868- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_462:578756..613868- >TCONS_00066988 ID=TCONS_00066988|Name=TCONS_00066988|organism=Clytia hemisphaerica|type=CDS|length=30957bp|location=Sequence derived from alignment at scaffold_462:578756..613868- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066988 vs. Swiss-Prot (Human)
Match: DC1I2 (Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2 PE=1 SV=3) HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0 Identity = 282/420 (67.14%), Postives = 341/420 (81.19%), Query Frame = 2
Query: 539 EMSDEAKQKILQSQNFAQFFDHAARIIEKAICEE-DYAFDY-GAIKDENEGDTMTSKKLALNRKFFDERWSKHRCVTCMDYSIQYPELLVASYNQNEAAPQDPDGVALVWNNKYNTQTPEYIFHNQSAIMSVCFAQFHPNLLVGGSYSGQIVLWDNRSRKRTPVQKTPLSASAHTHPVYCVEVVGTQNAHNLITFSTDGKMCSWSLDMLSQPQDVIDLQHTHSRYVAVTGASFQPGDVNNFVVGTEDGSVFSAQRHGTNQGLSEQFEGHHGPVTGINYNKVPGPIDFSHLFLTSSFDWTIKLWNNKSTKVLYSFEDNGDYVYDVEWSPKHPALFATVDGMGKLDLWNLNNDTEVPTSSVTVDPMAAINRVKWSGSGLQLAAGDDEGYIYIYDVGEQLALPRPDEWNRLVNTLQELQANQA 1792
E+++E KQ+IL S+ F FFDH+ RI+E+A+ E+ + FDY G ++ EG+ KL+LNR+FFDERWSKHR V+C+D+S QYPELLVASYN NE AP +PDGVALVWN KY TPEY+FH QSA+MS FA+FHPNL+VGG+YSGQIVLWDNRS KRTPVQ+TPLSA+AHTHPVYCV VVGTQNAHNLI+ STDGK+CSWSLDMLS PQD ++L H S+ VAVT SF GDVNNFVVG+E+GSV++A RHG+ G+SE FEGH GP+TGI+ + G +DFSHLF+TSSFDWT+KLW K+ K LYSFEDN DYVYDV WSP HPALFA VDGMG+LDLWNLNNDTEVPT+S++V+ A+NRV+W+ SG ++A GD EG I IYDVGEQ+A+PR DEW R TL E+ AN+A
Sbjct: 207 ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRA 626 The following BLAST results are available for this feature:
BLAST of TCONS_00066988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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