Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00066988-protein ID=TCONS_00066988-protein|Name=TCONS_00066988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
MADRKAELDRKKKRLEEIRAQRNKNKPSAAASTSTSSPVHSSPKHGADAT
SGSDIDNLLKGLDLGTTPSASTPKSAPDTQPAGSEVKTTTTSAPTKSVTL
SVSHREPVNVAPKELVSYEKGVQVQTIEEKDEPEPEPEIKTEEGNKDETD
DKPIKKEETPQVVEMSDEAKQKILQSQNFAQFFDHAARIIEKAICEEDYA
FDYGAIKDENEGDTMTSKKLALNRKFFDERWSKHRCVTCMDYSIQYPELL
VASYNQNEAAPQDPDGVALVWNNKYNTQTPEYIFHNQSAIMSVCFAQFHP
NLLVGGSYSGQIVLWDNRSRKRTPVQKTPLSASAHTHPVYCVEVVGTQNA
HNLITFSTDGKMCSWSLDMLSQPQDVIDLQHTHSRYVAVTGASFQPGDVN
NFVVGTEDGSVFSAQRHGTNQGLSEQFEGHHGPVTGINYNKVPGPIDFSH
LFLTSSFDWTIKLWNNKSTKVLYSFEDNGDYVYDVEWSPKHPALFATVDG
MGKLDLWNLNNDTEVPTSSVTVDPMAAINRVKWSGSGLQLAAGDDEGYIY
IYDVGEQLALPRPDEWNRLVNTLQELQANQATVGDLERPLSPSSSLQSSL
VSPGRI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1..25 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..106 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 584..606 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 121..162 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40_4 | coord: 277..316
e-value: 6.1E-4
score: 29.1
coord: 420..465
e-value: 0.0029
score: 26.9
coord: 372..415
e-value: 130.0
score: 3.7
coord: 323..366
e-value: 8.6
score: 11.1
coord: 513..553
e-value: 0.57
score: 18.5
coord: 468..508
e-value: 0.15
score: 21.1 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 427..465
e-value: 0.02
score: 15.6 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 427..474
score: 9.773 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 3..430
e-value: 4.7E-22
score: 77.8 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 431..603
e-value: 1.3E-23
score: 83.3 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 265..562
score: 19.116 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 235..552 |
Blast
BLAST of TCONS_00066988-protein vs. Swiss-Prot (Human)
Match: DC1I2 (Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2 PE=1 SV=3) HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0 Identity = 297/493 (60.24%), Postives = 376/493 (76.27%), Query Frame = 0 Query: 98 VTLSVSHREPVNVAPKELVSYEKGVQVQTIEE-KDEPEPEPEIKTEEGNKDETDDKPIKKEET------PQVVEMSDEAKQKILQSQNFAQFFDHAARIIEKAICEE-DYAFDY-GAIKDENEGDTMTSKKLALNRKFFDERWSKHRCVTCMDYSIQYPELLVASYNQNEAAPQDPDGVALVWNNKYNTQTPEYIFHNQSAIMSVCFAQFHPNLLVGGSYSGQIVLWDNRSRKRTPVQKTPLSASAHTHPVYCVEVVGTQNAHNLITFSTDGKMCSWSLDMLSQPQDVIDLQHTHSRYVAVTGASFQPGDVNNFVVGTEDGSVFSAQRHGTNQGLSEQFEGHHGPVTGINYNKVPGPIDFSHLFLTSSFDWTIKLWNNKSTKVLYSFEDNGDYVYDVEWSPKHPALFATVDGMGKLDLWNLNNDTEVPTSSVTVDPMAAINRVKWSGSGLQLAAGDDEGYIYIYDVGEQLALPRPDEWNRLVNTLQELQANQA 581
+ L ++ V+ P+E+V+Y K Q + + K++ E + ++ + + ++K +KK+E P E+++E KQ+IL S+ F FFDH+ RI+E+A+ E+ + FDY G ++ EG+ KL+LNR+FFDERWSKHR V+C+D+S QYPELLVASYN NE AP +PDGVALVWN KY TPEY+FH QSA+MS FA+FHPNL+VGG+YSGQIVLWDNRS KRTPVQ+TPLSA+AHTHPVYCV VVGTQNAHNLI+ STDGK+CSWSLDMLS PQD ++L H S+ VAVT SF GDVNNFVVG+E+GSV++A RHG+ G+SE FEGH GP+TGI+ + G +DFSHLF+TSSFDWT+KLW K+ K LYSFEDN DYVYDV WSP HPALFA VDGMG+LDLWNLNNDTEVPT+S++V+ A+NRV+W+ SG ++A GD EG I IYDVGEQ+A+PR DEW R TL E+ AN+A
Sbjct: 136 IKLGMAKITQVDFPPREIVTYTKETQTPVMAQPKEDEEEDDDVVAPKPPIEPEEEKTLKKDEENDSKAPPH--ELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQINIFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRA 626
The following BLAST results are available for this feature:
BLAST of TCONS_00066988-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| DC1I2 | 0.000e+0 | 60.24 | Cytoplasmic dynein 1 intermediate chain 2 OS=Homo ... | [more] |
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