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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066964 ID=TCONS_00066964|Name=TCONS_00066964|organism=Clytia hemisphaerica|type=transcript|length=2299bp
CGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTCTT
GCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAACAA
GGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAAAA
AGATTAGTTGCTATACTGAAGGTGAATTACAATCAGAATGTGGAAGCACT
AATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAATCCCTAC
GAGATGTTCAAGCGCTGGAtgggaaaatataaaaatatgggGTTTCAAAG
AGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAAAGAAAC
ATTAGATTGTCCAGCAGAGCGTTAATCCTCTACCATACGCCAGTTCAATA
GACGACCTGGTGAAAAATCTTAAGCAAATCGACGATGGATACCCAATAGG
AGCAACACCACCCACACCAGGGAGAAACACAAGATCACCAGTAACAAGAG
ATGACGAATCTTCAAATAACAGTGGTCTCATTATTGGCATCGTATTTGGT
ATATTTGTTGTCATCTTTGCAATGGTTCTGGCATTCTTCTTGTATAGGAG
acGTAAAAGAAGCCGCCGAGCCAAGAAACAAACGCTCTCACCCGTATACG
CAAAATGTGAAGTCGACATCAACTCAACAAATGGAGAAGAAGAAAGCAAA
CTCATACACCAGTATACCGACTCCAATGCATACGCTTTACCGTCAAACCC
ACAACCTGAGTACCGTGAAATCGAACCTGAAATTCGCTATTCACCTAGAA
ATAATCATGTTTCCATGGAGACTCCGAAACAAAACAACAGCCATTATGTG
TCAGCGACTTCTACACAAACCAATAGCAAGCAAAAGGGACTTGAAGCTGA
GTACCAGACCCCTGATATAGTGCCATCACCACAAAATAGAATCACATCTG
AGATAAGCATAACAAAAGACAATATTACCGATGAAGCACTAGATTATAGC
GTTCCTGATAAAACTGGaaagtcaaaatctaaaaacaatACTAAAAATGA
TACGCCTTACAAAGAACATTCTGTAGGATATAGCGTTCCTGATAAAACTG
GAGACTCGGAATGGAAAGACTATACTGAAAACGTGAAAGAATCTTCGCCA
GAATATAGTGTTCCAGGATCATCGGTAGATCATGTAGACAGTGGAGCTGC
CGATGACGAAACAACACCTTTAAAGGGGTATAGTGAGCCGGGACAAATAA
TAGATAATGGTAAAAGTGATAATGATAATGATGATGACGATGACGAAGTT
AATTATTACAGTACACCAGTAACCAGTGAAACGGATGCATTGGTGAGACC
GAATTCAGCATTGTACGCTAAAGTGAATAAAAATACGAAGAGATAGGGGA
CTTTGAGAAAGTTAAGCTTGAATATCAAAGTATgtaaattttaaagcttt
gcattggcttcaaaaggaaattttgaagaaatttaaaATACCTTCTTCTC
ATAGAGCATTTAATGACatttgttaaccggttacttctTCAAAGCAGGCT
ACACGGCtatttgcgcaatgcaattggttcttttcgcgtgacgacgggcc
tacattgcccagagttgcccgtcgttaggaaaattcgtTGACatcaatgc
gttgacatcatgtctctcaatttttatttctgacgtcagaaattataaaa
atttttgatctcttttcgcttgtatttttcactttagttcgctatttttc
ctgaataaagcgctaaaaatcaatcgaagctgaaggaaacggttaataaa
tacaataatgaccggttttttcggctgtactgaaaatattgccctcggtc
gacgcaacaacctcgcaagctcggtcattacttgacctcgggcaatattt
ctcagtacagcccttaCTAACCAGTCTTTATTGTATTAGTGTAATATATG
TATACAAAATGATGTAAGATAAAAGTTTGCGTTGGCTTCGAAaggaaaat
ttcaagaaatttttataaaatacttttccaaaaaaaattaacaaagaaaa
gcaagaaaaacCACATAAGatttaattcaattttactACTACTATATTGA
GTTTCAAATTGCACATAACCTCCTGCTCTCTTAGAATCACTTTTAAGTAA
TTTACAACAATATCCCGGGGGAGGGGACGTGTCACTGGTCAGAgttcctt
ttttaggctctgaagatatctgacagggttccAGATAGATTTCCAAAATA
TGTATCCGACAGGGGCGACTattgggaatttttgaaaattcatagggtg Run BLAST on NCBI transcript from alignment at scaffold_462:242567..247290- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066964 ID=TCONS_00066964|Name=TCONS_00066964|organism=Clytia hemisphaerica|type=transcript|length=4724bp|location=Sequence derived from alignment at scaffold_462:242567..247290- (Clytia hemisphaerica)
CGGATGAGATTATATTACTGGACAAAAACAAAGATCCGTTAGATATTCTT
GCAGGTGGCACTTTTAAGGATCACCGCACCTGTAGGGCTGATACTAACAA
GGGTAATATTCGAAGGAACATTGGTTTATCATCACAAGACCCTGGCAAAA
AGATTAGTTGCTATACTGAAGGTGAATTACAATCAGGTAAGACTTAAAAA
TATGGTTTGAGAAAATGAAATGAAAGTAGTGGTTAGTAGAACTCCTTTAA
TGTATCAAATTAGTTATTAAAGGTCACGGAAAAAACTCTAGCCTGAGTAA
AGTGTATTCTAGCGGTAAGGACTGTTGTAGCCTGGTCACTATGAGGTAAA
CAATGTAAGTGATGCATTTTCTAGAATTGTGTAAACTATCATTTTGCAAG
TGACCCCTTTTAAAATCCATCAAGTGACTTAATGATTACGATGGGAGTGA
CTTTATTTCTTAATAAGAATCCCATGATATAGTTGTGGTATACCGAGAAT
CCTTAGCTTTTAAGTCAACTGAAGCATACAGTATATGCCATAGGCTTCTG
CTCATACTCCGATGAAAGTTCCTTATAGGAAGTACATCAATAGAGGTCTG
CGAATCAAACTAATTAAAACCATATTCAATAAATCTTCAGAATGTGGAAG
CACTAATGGGAACGAATTCAGAACCATTCCCAAACACATTACTCAAATCC
CTACGAGATGTTCAAGCGCTGGATGGGAAAATATAAAAATATGGGGTTTC
AAAGAGCGTGATAGACTCGGTTGGCAGGAATTAAGTAATGGAGAGAAAAG
AAACATTAGATTGTCCAGCAGAGCGTTAGTAAGTATCATGAATGAGTTTG
ATTACTTTGATTTTACGCTTAATCTTTCTGAAATTATCACCAGTCTGGAA
TCAGTCTATTTGCTTTAGGCAAGCATTCATTTTAGCGAATGTAGTACAAA
GGTAGAGCCTTCTACTATGGTATGCAAGGTCGTGGGTTCAATCCCGCCCG
AGTCATATCAAAAACTTCGTAGTAGTACAAAATGGTACTTGATGCTTTGT
GTTATACAATTAAAGAGAAGGATCAAGGGTGAGTGGAGCATTTCATGGAG
AAAGAGTAGCGCCCTCTCCTACCTTCGGGGAAAATTCGACAATAAAGGTT
TATTATATAACCATTGAAAAAAGAAATTATTTGGTAAAACGCCTTATAAT
ACCATTCTTTACAGAATTTCGATAATCGAAGAAAATTGGATGGACTTTTA
GGAGTTATCACGTACACATGTCCAAATGGAAATGTTTACTGTGATGTTCT
TAAGTTTGCTGGAGCGGCTAAATGTAAGTGGGAAAACTTTTCTTTAACGT
CATCAATTGGAAGAGTGCTTTTTAAAGCTCAGGTTTAATCAAAATTTATT
TTGAAATACAACTTTATTGAATTCGCTCTACGAAGAGTATTGAGCACTCT
TTTAATAGTTGTTCAACAAAAACATTATTGTTTTCGCCTCAAAAATGGCG
TGATATGTTGGGAATTAACACCACGGTTATTACAAGTCGCCTCCATTCTA
GATAGGTAAAAGTCTACTAATTCTCTTAGCAAAGCGTCTACCACAAGCAA
AGTGTTGAGTCTCTCTATACCTCGAACCCGCACGGAAAACACAAAATTGT
TTGAATTAAGGTTCAAAAGGTGTTGTTAATTGGAGGGACAAGAAAACTTG
TCCGAGTTAAGGAAACATTCGATTTATAGAGGTTCAATTTCTTTTAAAAT
GTTCTATAGATCCTCTACCATACGCCAGTTCAATAGACGACCTGGTGAAA
AATCTTAAGCAAATCGACGATGGATACCCAATAGGAGCAACACCACCCAC
ACCAGGGAGAAACACAAGATCACCAGTAACAAGAGATGACGAATCTTCAA
ATAACAGTGGTCTCATTATTGGCATCGTATTTGGTATATTTGTTGTCATC
TTTGCAATGGTTCTGGCATTCTTCTTGTATAGGAGGTAAAAAAATCTTAC
ACAATCAAATATAAACACTTACAATGTCACAAAAGTTGCCAAAAGGCGTA
CTGATCCCCATTTCTCGAAGCTGAGAATAAACTGGAGCCCAACCCTTACA
ATCCTTACTTTCAGCAAAAAGTTGACACTTAGAGAGACATTCGATTTAGA
AGATGAAAAACCAGACCCTTTAAGCACGCACATAACCAGCACCAATTTGT
GCCTAAGTATCCCCCCCCCCTTCGGGGGTTATTAGCGAGTTTATGTATTT
GCATTTTTGAGGACGCGGTAAAGTGACTGAAGCGATCTGGAAAAACCCAC
AGTTCTGACCAGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTCGT
CCTCACTTAGTCAGGATCTAGTCAAGTTAGAACCTTATCGTCTCCGTCGC
AGAAAAACACACATGCATAAACTCGGTATTGAAAAGGTGCCTTTCATGCA
TGAATCACAGTATTATTTTCTTTTTCTTCAAGACGTAAAAGAAGCCGCCG
AGCCAAGAAACAAACGCTCTCACCCGTATACGCNAAAAAAATCTTACACA
GTCAAATACAAACACTTGCAATGTCACAAAAGTTGCCAAAAGGCGTACTG
ATTCCCCATTTCTCGAAGCTGAGAATAAACTGGAGCCAAACCCTTACAAT
CCTTACTTTCAGCAAAAGGTTGACCCTTAGAGAGACATTCGATTTAGAAG
ATGAAAAACCAGACCCTTTAAGCACGCACATGACCAGCACCAATTTGTGC
CTAAGTATCCCCCTTCGGGGGTTATTAGCGAGTTTATGTATTTGCATTTT
TGAGGACGCGGTAAAGTGACTGAAGCGATCTGAAAAAACCCGCAGTTCTG
ACCAGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCACT
TAGTCAGGATCTAGTCAAGTTAGAACCTTATCGTCTCCGTCGCAGAAAAA
CACACATGCATAAACTCGGTATTGAAAAGGTGCCTTTCATGCATGAATCA
CAGTATTATTTTCTTTTTCTTCAAGACGTAAAAGAAGCCGCCGAGCCAAG
AAACAAACGCTCTCACCCGTATACGCAAAATGTGAAGTCGACATCAACTC
AACAAATGGAGAAGAAGAAAGCAAACTCATACACCAGTATACCGACTCCA
ATGCATACGCTTTACCGTCAAACCCACAACCTGAGTACCGTGAAATCGAA
CCTGAAATTCGCTATTCACCTAGAAATAATCATGTTTCCATGGAGACTCC
GAAACAAAACAACAGCCATTATGTGTCAGCGACTTCTACACAAACCAATA
GCAAGCAAAAGGGACTTGAAGCTGAGTACCAGACCCCTGATATAGTGCCA
TCACCACAAAATAGAATCACATCTGAGATAAGCATAACAAAAGACAATAT
TACCGATGAAGCACTAGATTATAGCGTTCCTGATAAAACTGGAAAGTCAA
AATCTAAAAACAATACTAAAAATGATACGCCTTACAAAGAACATTCTGTA
GGATATAGCGTTCCTGATAAAACTGGAGACTCGGAATGGAAAGACTATAC
TGAAAACGTGAAAGAATCTTCGCCAGAATATAGTGTTCCAGGATCATCGG
TAGATCATGTAGACAGTGGAGCTGCCGATGACGAAACAACACCTTTAAAG
GGGTATAGTGAGCCGGGACAAATAATAGATAATGGTAAAAGTGATAATGA
TAATGATGATGACGATGACGAAGTTAATTATTACAGTACACCAGTAACCA
GTGAAACGGATGCATTGGTGAGACCGAATTCAGCATTGTACGCTAAAGTG
AATAAAAATACGAAGAGATAGGGGACTTTGAGAAAGTTAAGCTTGAATAT
CAAAGTATGTAAATTTTAAAGCTTTGCATTGGCTTCAAAAGGAAATTTTG
AAGAAATTTAAAATACCTTCTTCTCATAGAGCATTTAATGACATTTGTTA
ACCGGTTACTTCTTCAAAGCAGGCTACACGGCTATTTGCGCAATGCAATT
GGTTCTTTTCGCGTGACGACGGGCCTACATTGCCCAGAGTTGCCCGTCGT
TAGGAAAATTCGTTGACATCAATGCGTTGACATCATGTCTCTCAATTTTT
ATTTCTGACGTCAGAAATTATAAAAATTTTTGATCTCTTTTCGCTTGTAT
TTTTCACTTTAGTTCGCTATTTTTCCTGAATAAAGCGCTAAAAATCAATC
GAAGCTGAAGGAAACGGTTAATAAATACAATAATGACCGGTTTTTTCGGC
TGTACTGAAAATATTGCCCTCGGTCGACGCAACAACCTCGCAAGCTCGGT
CATTACTTGACCTCGGGCAATATTTCTCAGTACAGCCCTTACTAACCAGT
CTTTATTGTATTAGTGTAATATATGTATACAAAATGATGTAAGATAAAAG
TTTGCGTTGGCTTCGAAAGGAAAATTTCAAGAAATTTTTATAAAATACTT
TTCCAAAAAAAATTAACAAAGAAAAGCAAGAAAAACCACATAAGATTTAA
TTCAATTTTACTACTACTATATTGAGTTTCAAATTGCACATAACCTCCTG
CTCTCTTAGAATCACTTTTAAGTAATTTACAACAATATCCCGGGGGAGGG
GACGTGTCACTGGTCAGAGTTCCTTTTTTAGGCTCTGAAGATATCTGACA
GGGTTCCAGATAGATTTCCAAAATATGTATCCGACAGGGGCGACTATTGG
GAATTTTTGAAAATTCATAGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066964-exon-scaffold_462-1575043694:247105..247290 | TCONS_00066964-exon-scaffold_462-1575043694:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1575043694:246463..246650 | TCONS_00066964-exon-scaffold_462-1575043694:246463..246650 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1575043694:245306..245531 | TCONS_00066964-exon-scaffold_462-1575043694:245306..245531 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1575043694:242567..244265 | TCONS_00066964-exon-scaffold_462-1575043694:242567..244265 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1510915933:247105..247290 | TCONS_00066964-exon-scaffold_462-1510915933:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1510915933:246463..246650 | TCONS_00066964-exon-scaffold_462-1510915933:246463..246650 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1510915933:245306..245531 | TCONS_00066964-exon-scaffold_462-1510915933:245306..245531 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1510915933:242567..244265 | TCONS_00066964-exon-scaffold_462-1510915933:242567..244265 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1491911889:247105..247290 | TCONS_00066964-exon-scaffold_462-1491911889:247105..247290 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1491911889:246463..246650 | TCONS_00066964-exon-scaffold_462-1491911889:246463..246650 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1491911889:245306..245531 | TCONS_00066964-exon-scaffold_462-1491911889:245306..245531 | Clytia hemisphaerica | exon |
| TCONS_00066964-exon-scaffold_462-1491911889:242567..244265 | TCONS_00066964-exon-scaffold_462-1491911889:242567..244265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:242567..247290 - |
Blast
The following BLAST results are available for this feature:
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