TCONS_00066753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066753
Unique NameTCONS_00066753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066753 ID=TCONS_00066753|Name=TCONS_00066753|organism=Clytia hemisphaerica|type=transcript|length=1097bp
TATTTGTTTAAAACACGTTTGTGAATTTCAGTTGGTCATtgcttgaaaga
tcaaaatagAAGCTTTCAAAAACAGTCGGCTTCGATCTGAATATATTCCA
GTTTTCGTAAATTATATTATATCGAAAAGCAAGAAGCATATATACTTTAT
ACACAATTCTTTGTAGTACGATTTACGGATCTCAAAGTATCTCCAGGTTG
AACCCAACGAAAGAAAACTTACTTTGAGAAGAAAGCTGAAAgaataaaaa
gttacaaaatgGGAAACGATGATAAGGTAGAAGAAATCAAGGTTGAAAAG
TGGGATGGAAATGCACTGAAGCATGCTTTAGATGATGCGGTTAGAAAGAT
ATTCACAGACGACTTGAAATACATAGAGAAGAATACATATGTTGATGTGA
GGCTGTTATTAAGTTTCCTTGGCGTGGCAGTGGCTGGTTATGCACTGATC
TACGATTTCCTGAACCCATTCCCAGCATCCAAATGGGTTTTAGCATTCTG
TGTTATCTCATACTTCATTTTCATGACAATTCTTACTGGATTTATGACGT
TCGTCGAGAAGAATATCATTTTACTGGCCACGCAAAAAGAAGCATCTGGA
CTGgatCCTGACTCCACATGGACTATACAGACATCATTGAAACGTTTTGA
CGACGAATTCCTGATTGAAATGATCAAAGATGACGGAGCTACAAAGAAAA
CCATCACTGGATCATTAACAAGCTCGGTTGCAAACTATGTTGATGTGAAC
GGTGTCATCTTGGTCAATAAATTGAAAACAGATGTTTTAGCGCAACACAA
AGCAATGGGTAACGAGAAGAAAAACCAATAAGCTATGTTACAGTAGATCG
AATCTGTACAGCAGTTAGATTTGAGCCAAAGTCTTTCTGGCAGATGGTGG
AAGAAAGTGATATTTTGTATAGAAGTTAggattttatttaatttggaaga
aaatacacaatcaaaaaaaataattttacaacttGAAACATTCTCTTCTT
GAGATTTGTTAAAGCCTCGTTTTCAAAgtaacgatgtaaaaataattcag
cattagtaaataaataataCCGTAATCTACAGTAGTTTTAATTTTCG
Run BLAST on NCBI

protein sequence of TCONS_00066753-protein

>TCONS_00066753-protein ID=TCONS_00066753-protein|Name=TCONS_00066753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MGNDDKVEEIKVEKWDGNALKHALDDAVRKIFTDDLKYIEKNTYVDVRLL
LSFLGVAVAGYALIYDFLNPFPASKWVLAFCVISYFIFMTILTGFMTFVE
KNIILLATQKEASGLDPDSTWTIQTSLKRFDDEFLIEMIKDDGATKKTIT
GSLTSSVANYVDVNGVILVNKLKTDVLAQHKAMGNEKKNQ
Run BLAST on NCBI

transcript from alignment at scaffold_46:102027..113927+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066753 ID=TCONS_00066753|Name=TCONS_00066753|organism=Clytia hemisphaerica|type=transcript|length=11901bp|location=Sequence derived from alignment at scaffold_46:102027..113927+ (Clytia hemisphaerica)
TATTTGTTTAAAACACGTTTGTGAATTTCAGTTGGTCATtgcttgaaaga
tcaaaatagAAGCTTTCAAAAACAGTCGGCTTCGATCTGAATATATTCCA
GTTTTCGTAAATTATATTATATCGAAAAGCAAGAAGCATATATACTTTAT
ACACAATTCTTTGTAGTACGATTTACGGATCTCAAAGTATCTCCAGGTTG
AACCCAACGAAAGAAAACTTACTTTGAGAAGAAAGCTGAAAgaataaaaa
gttacaaaatgGGAAACGATGATAAGGTATTCAATTGTTCAATTGGCTTT
ACATTCAAGGCCAGAATGTGTCGAGTACAAACTGAATTATCGAAATTCCC
ATTTGACAGTCTAGTTCATTCTCAAAACGGAACTTAATCCAGCCTCGAAA
TGACGTGTTACAGTACCTCCTAAGCCTGCTGAGCTGAGCCtgacaggacc
ctgccgacgcaccagaCTGTCCgatgtatttgtccggtggcaaacagtat
cctttcgctacactgGACGCAATAAGTcgggtgtcagtccggtgttgcat
gcagggaattttggacgccggaaaTTTATGaaacgaaaaattaagaaaca
ccggacgcaccggacttgtCATGTCTggtgtgttttgattgtccggtggg
aaaaaatagcCTTCTCCGACACCAGACATCCGACTTctttaagtccggtg
tagagattgtccggtggtaaaaaaattctcattttacaccggactttcgc
gtgtccggtgttcgttaagtccggtgcgtcggcagggtcctagcCTGACA
AGTCCAGTCTGAGAAATCCTTCTAATTGCACGCTTAAAATTCCGAGATTT
AAACGCGTAATTGCACGGCTATCAAATTGTAAggtttttaaaagtgtttt
tacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNACATTGAGATACATCATTTACAAGTtattagaaa
agaaatgaaaacacttttcgtTTGTGCGAGTTCAAAATAGACGATTTTCC
TCAAGTTTtctcggaaaaaaatctggaatgCTTGGTCAATTTTACGCAAA
ATTTTACGAAGATTCcaattcaaaaatcagtttttgtccGTTTGACCATG
GTTCCATCTGTTTTTAAGTAAAGTAAGCCCCACTATATTGCTCAAGCTTC
TTCAAGCAGGGCGGAAaattaagcgtgcaattgcacatGGGTGGACTCGG
GCGGACTATGATAAGCGCGCATTTACAAGTTTACGCCTGCGGAAGTTAAG
CGTGCAATTAGAAGGATTTCTCAGACTGAAGTCTAAAAGCTtatatatca
ggattagaaactaggctagacTTACCTCTTTTACTCATAATTACTATTTA
TGTAAGGGTACCTAGAAAATTTTTCGGTGCCATTTTTGTGAAGACGGAAT
GTGGTAGACTGCGCAGTGCCagtggattttttcatttttagcgactccag
aagttaGGCAACTTTCATTTACGTCAAACCAAGTGTTTCATTATTGCATA
AACGAAcccttcaaattttttttctattttatgctacagcgttccggttt
ttactaaaagaaagcccgtgatcttagctttccagccgtatatataacac
tgtggactcaggctagacggcaaattggttaAGTGCCGAacgtttttgca
acattttcgaaattGTTTTCCGATGAGAGAAAAACAACTTGCAAATATca
atgaaaaaatgtttctggaaatggaggaaaatgtattgaaggctgaaact
ttgtatgtttattagaaaaagggtgagggattcaaaaatcacaatcgcta
attttagtcctttgattttcatgtagtttttttcacttttttgcttcttt
agcatgggaatgtcccaaaaaaaagtttatatttatgccgaaatgaattt
tcttttcatttggggctTCTCCTTTCAGGAgactcctttcagaaaaactt
taaTTATAACATTTTGTTCCTctatttccagaggccccttgaaaatagGT
CCtatcaccttttttgactcatttcaaccttttccaagctaattttataa
aacaatgcaatgtcttctttttcaaaaaaagatacatCTATcgttatttt
cataaatatatatactaaatattttacaaatatttttatataataatatt
ctaacaccatcaaagaattctccctccaaatttcaggtctctagctacac
tagaaaaagagatttgcaaaattaaagaagcCTGACTGGGAAATatctgt
tttttcttttttgacacatttttcgaatttttccaagctatcttcctaac
ctttttttttgacatttttagtaaaatttttggcactaaaatttgaatat
ctttacgaccacttatcctctggaggcctataacccctcattttctttct
atttcaaagctctacaagattatgataggttttgaaaaggaaattaaaat
ttgaaaaatcttctggagttgctacaattttagaaacaaagaaagataTG
AGAATGCAgattttttttagaagaaaGCTGAGTAAATTCTCTttagtttt
aaaaaatatttgatgatcTTAGCTACTCTTTCTCTGGTAAGATATTTCAC
CCCaaactttattttattaaaattgcGAACTTGTTACTGTGTGAGGTGCA
ACCCTTTTGCTGCCCTACTCAAGATTTTGgcaaaagaattttgaaaaatg
accctacaagatttgactatatctttttattccatgaagagattgggctc
ttccaaaaaaaaattgtacaggggtattgacaaacttttttcactaactT
TTTTCACCATCCCCTGGAAATTAGAAGTTGACAACCCTGGAAAGTGAATA
TTGAAAGGGCCTGGAAAGTGACTATATACCCCTGTatagcgaccgtagta
cagtggtagagcatccggctacgattcgcaaggttgtgggttcaaccccc
agccgggtcacaccaaagattcccaaaatggtacttgatgcctctctgct
tgattctcagcaactaagagaaggatcaagggtaagtggagaaatccagg
gagaaagagtggcgccctcccctaccttcgggtagataactatcgaaaga
ggagccttcgggtcgcctccgactgcggtcgcagacttacttttataccc
ctgtatggtttaaaaatggaatagcccattactttcaaataaaaaatata
ttgacaatgaatgggtaagctttctagaaatcctaacataattgcatagc
ttttaccaaaaaatagcactttaggatcagaaacagtcaaaaactagctt
tttccaattttcttcagGTTACAGGAATtatccttgtttgttttgatctg
aaattttcagtaggggtggccaacatggttcccttgctcatatcaggggg
gggcCGAGACAGGgataagagaattaaagtttctaagttaAATCCTAATT
ATCACCCATAAAAGTgactttttttgtccatatcttttaaatagatagtc
ccagccttatccctccttcagtaaagctttcTATACCTTTTATTCTTCAG
AAaaagttcctgtagccagtagcgTGACtccctgtatttctattgtaTTC
CGCACtggtttttcaatagagatgtcacatgactcaaatcccgcagtctt
attggattagagaaagcaaaagtgaaatcgcgcgatctgattggatgaaa
aaagaccgtAGGAACTGGAACCAACTGGAACCAACGTGttaaccaaaatt
aaaaaaattcaggacTTTTTGCTGCTCCTCAAAATTAGTTACCTTAGGCA
TAATAACTGAAGTCTTCTACAATCTTTGGGATCCCGGATAATTTTTTGAC
CCATACAACTTTAAACACCTAGCTTTTgttgtttaacttttttgaaaatt
ccactATACCTATTACTTGGATACATTTCACCAATGGTTTTGGTTTTTTC
AGACAACATTCTTATTCTATTAGGAAATCTAAGACtgtttacagaatttc
aaaaagttagTTTTTAGCATATATATTGAAATGACTCGGTAGTTCACATT
CTTCACCGGTTATGTAAGGGAGGATAAGACTTTTTTTTccttactattca
atagagtcaaaatgtcaatcaaaaaaaaatagataaaattcAAGGAGCCC
TATTAGATAACCATGCTTTTATTCTAAATTTACCTTTGAAATTggtgaaa
gtttcaaaattttgaatacaGATGGAGGGaggtaccttaaaaagtttagg
TTGAGTATTGATCAATTTTCAGGGGAAAGCTATTAAATGTAAATATGACC
GTTAGATACGGTTGGGAGGAGTGTCAGCCATATTGCTTTAACCTAGATAT
TTTGTTTGCAAAGAACTTAATCtatttgttgtttgttttcagGTAGAAGA
AATCAAGGTTGAAAAGTGGGATGGAAATGCACTGAAGCATGCTTTAGATG
ATGCGGTTAGAAAGGTAAAAAGAGAattaaattcttcaaaaatttcttta
tttgtATTCTGTTATTGAAtgaacttttaataaaatttgcATTTTGTTTA
GAGAATAAATTTTGTTGCGAATTTGTCTGTCCCTAAAAATGATTCCAAGA
TTAAAACTCTGttgtgatagggcaaaaataaatatatatgaaaaattatt
attattattaaaatgaaTATTACAGGTCGTAGGCACTCAgtgggcctcta
aaccgatctcaatttacaaatttcgtGTAACGAATTTCTTTGGATGGCTT
TTGCAtgcttctttcaacttttctttgaaGCCTTTTATGGAAACAGCAGC
TACCACCTCAGACGGCAATTTATTCCACGTAGGGATGGTTCTGTAGTAGA
ACGACTTTGTTTGCGGGCCGCGGAATCCATCACTTGCAAAGTTCGGCTGG
AGTTCATCTTTATGTTGTCGATTCGGACGTGGTCGATGGGTAGTTTTCTT
TGGAATCGTAGCTTTATCGTAGAAGTGAAGATGCTTATAGACCTACACCA
TATCACAAAAAGTTCTACGAAACTCTAGTGTTGGTAATTGTAAGCTTCGT
AGTCTATCCTCATAAGAgagatttttgtaaagtttgacaAGCCTAGTCGC
ACGTCTCTGCACTGCTTCCAATAGGTTGACGTGTCTTCTTAGTTTCGGTG
ACCAGACTGATTGTGCATATTCAAGATGCGGTCGAACGAAAGTACAGTAC
AAAGTAAGAAAAATCTGTGGGCTAAGGTTTTGGAAGCCACAGTTAATAAC
TCCAAGCATCGAATTGGCCTTGTTGACTTGCTTATGTTCCTCGAAACTCA
ACTCTGCATCGATAACAACACCAAGATCTTTCTCTATGAAAACGTGTTCC
AGTTGATTTCCATTTAGAGTATATGGATGTGCATGTTTAATGTTTGTAAA
CTTTCCAATTGTAAGTACATGACACTTGTCTGGATGGAACTGAAGCAACC
AGTCTTAAGACCATTTCTCCAGCTCCTTAATATCTTTTTGTATGACAAGA
GAGTCATCGATGGAGTCAACTTCTTTAAATATCTTTGTATCATCAGCAAA
GAGTAGTATGGATGAGATGATTTTATCAGGAAGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGCGGGACTGGAATTCCGGTAGTTCTCCTTCGGGTTCTTTT
GTGAAGACACTACAGAATTGTTTCTGCAGGATGTCTGCTTTTTCATGGTC
TTCATGTTTTAAAGATGAAATGTCATTTGGTGTTTCGAGTAGGGATGAAA
CCCCACTTGCAGATTTTAGTTTACTTCGGACATGTGACCAGAAGATCTTT
GGTTTACTTTTCAACTTGTCGCAGATACCTTTTTCGTATGACCTTCGAGC
TTGTGTTATCTTTCGGTTCACTCTGTTCCGTGATGGTACGTAGTTTGTAA
GGTTCCTAGCTTTTTCTTCCGGGTCTTTAGACTTTAACCAGAGCCTATGA
AGTTGTCGTTTTTGTTTTATCTCATTCTGGACCTCTTTTTTTGATTGGTA
TAGCTCCCTTGAGTTTCCAGCTTTGATTGattatcaatatattttattgG
AATAAACTGGCTTCTCAGATCAAGAACTTTTCCTTTAAAGATTGTCCACA
TATCTGTTACTGATTTTCCTCTCAATTCATTGATCAAATTTTTCGACCAT
TCTCCATCATTTAGGTGTTGTTTCATCTTTGTGTAGTCACCGGTTTCATA
ACTGTATCTTTTCGAATTGGGTTTGCGTTGAGTGTAGCAATCAAACGTAA
ATACCAATATGCCATGGTCGCTCTTCCCAAGGGCTCAGGTACTGAAGGTC
GCTAACTTGATTTTGTTCATGAGTAAGTATTAAGTCTATCGTTGAAGGTT
CGTCTGTTCCTCTGCATCGCGTTGGTTCATCAACAAGTTGATAGAAAAAC
GCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTATGAGTGTATCTCTTCTCGGAAGCAATAGATTT
GATCAGCTCGTTGAGTTTATCGTTGTTTTCTTCTGaatgattgttgtttg
ttggactACGGTAAAGGCATCCAAAAACTAACACATCCCTGTCGCAAAGT
CGAATTTCGATTATGCATGATTCATCAAATTCTGTCgccgattttacacc
aactatAAGATGCTTGATCGAGTTGTTAGCTAATATAATGATCCCGCGTC
CTTTTTTTGATGTTATATTTTCATGGTTCACCAGCTTATACTCTTCAAAT
TCGTATTCATGAGGTTCTCTCAGTGTACCAACCTTTGATTTAACTTCACA
AATTGCAATCAAGTGTGGTTTTACATTTCGTGATTGCATTTTTAATTCTC
CCAATTTTTCAGATGTTAGTTGGTCTGCATTGGTATACATGATTTTTATA
TTCTTCGCAGTTATTGTATTATCTCGTGTCTTGtttttttgggttttatt
tctttcgttattttcgtattttttcttACATTCTTTGGTGGAAATTGATC
TTGTCGTTGGTTGTTGACCTTCTTTAGGCGGAATCCGTTTTTTGAGGAGA
CACGGACTCGCCAGATCCCACCTGTTTCGCTTTCATTCTTTCTTTTAGCG
TCAATTACaagatttttgaattctttCCTTTGATCAGGGGTTAGATCTTC
ACAGATACTTATCCCTTTATACATATTCACACCCTTCAATACGTGAAGGT
TACCGAATATACTTTCCTTTTCTTCTTCCTTGTCAAATGAAACTAGCAAT
GGGCGTTTCTTGTCGGCTACTTTTGCTCCAAGTCTTGTCATATGTTTGAT
CTTCACCTTAGCATGAAGATTTTGAGTGAGTGTTTTCACCCACTCCTCGT
CTTTCTTCGGTTGATCATCAGTGAATTTTTCAACACCGTGAATGATGATG
TTTTTTGAACGTTTTAATTTGTCCTTTTCTTCCGCAGCTTCCTCTTTGTG
CACCTCTTTCACGGCTATCTTTATATCGTCGTCCGAGGAAAAAATTTGGC
TGTCAGCAGAGGCCACAGCGGCGTAAGATTTTGTGCATTCCTCTTTTATC
GTTGACAGGATTTGTGTTCGGAAGTCCTCGAGCTTTTTTTCCAATTTGGT
TTCTACGTATTCAACAGTATGGAACGCTGGATcgtttttcaactgttttt
ttaATACTGTTAGCTCATTCTTTTGTGTTTCGACTATCTCCAGGAGGTGC
TGTTCATTATTCTTTAGTTTATCTATCgtttcttccttttctttcacTAT
GGTTTTCAGCTTAGAAAGTTCAGCAGCCTGTCTGATCGAGGGTTGTGGTC
CAGGATTGGGAANTAGCTCATTCTTTTGTGTTTCGACTATCTCCAGGAGG
TGCTGTTCATTGTTCTTTAGTTTATCTATCgtttcttccttttctttcac
TATGGTTTTCAGCTTAGAAAGTTCAGCAGCCTGTCTGATCGAGGGTTGTG
GTCCAGGATTGGGAATATCCTGgatatcttttgatatttgcaCGCAGTTC
GTACACACGTACTTACAGTTAAGTCTCCTACCGTCTTTGAAAGCTGAGAT
CATGTAAGGGTGTAGTCGAGTGCAGATATAGTGGACCATCCTGTTGCAGT
TTGAACAAGTCAAACAGTCCCCATTCTCGTCATCAGCGCAAGCTTGTTGG
GTGCAAAGTGGGTTAGGTGTGTATCTTGATCTTGTCGACATCATGGTTGT
TGTTAATCGAGTGTGATGTTggaattttaatgtttttgagtgagtttagg
agcgatttttcatagtttttcagaaaaattcgtGATTTAGTTGAATTTGT
CTGTCGCTCCAAAAAACACGTCTTGACTCGAttttaattgacgtcaaaaa
tgaaaacgaaGATGATCATCCAATCGAAAGatgtataaaaaatgaaaata
aaatgcttGGTTAAGTTTTTTGACTATGTTATGGCTAttatggttttatt
ttttgtcaaGATTTGCAACGaactaagtttttttttcgttttttttttgg
acaaccaaattacatgattttttaCAAGATTCAAATGAGTGAGTATAATT
TTGTGAAAGAATATTACAATGTTCTGATTCCTTTTTGCTGAGTAGACTTT
ATCCTTCTTTAAATTGTTATCTTTAGATATTCACAGACGACTTGAAATAC
ATAGAGAAGAATACATATGTTGATGTGAGGCTGTTATTAAGTTTCCTTGG
CGTGGCAGTGGCTGGTTATGCACTGATCTACGATTTCCTGAACCCATTCC
CAGCATCCAAATGGGTTTTAGCATTCTGTGTTATCTCGTATCCTTTTCGC
AACAATTATATTTTATTCAATAAGTTGTATTCTCAAGATTCCTATTTGCT
GGTCCTTGCAGGTTTTtacttttgattctttttccCGACAATTCTGTGTA
CTTACAATTTAAGTTAAGCTAcaagtttttattgaatttaacaTGCCTAA
TGTTGGAAAATTCTCCTTGACAATCAAACTATATTAGATACTTCATTTTC
ATGACAATTCTTACTGGATTTATGACGTTCGTCGAGAAGAATATCATTTT
ACTGGCCACGCAAAAAGAAGCATCTGGACTGGTGAGTTACTTCTTAATCT
AATACATCTACTATAAAGATAGATTGTTTAGCTACTCCTGGTGTGTAAAT
TTGTTTAATCCTGCTACCGGATCTTAGCGTCTAGCAAACAAAAGAGTAGA
TTTAAAGGTAAATAGAGATCGAAAGTTTAGTCCCTAAAGGTGAATTTCTT
GGATTTAGTGTGTTTCGtaaaattttattcaatttcaaattttgacacct
GGAGACAAGCTTTCCTTGGTATAGTGAGCTCTGGTAAATTATATTGATTT
AAGGGGCTTTTCAGGCCTACAAAAGGAAATTGTTTTAAGGCATTGCACTG
GTTCAATCTCAatgctactctcgggtacctaatagccagggggtttggaa
taagcggaggttgggaaaaatctcaaaacttaataagcgggggggggggg
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNatcccggctattaggtacccgagagtacagcagaattaggacaaagag
ggaactttcaaaaacattttcccagggggggttggaataaggatgtcctg
ggtggaaaattaattagcggggaggacggctattaggtacccaagagtat
tTGCATTTGTTGACCCAtagaatgttttcatttttaggatCCTGACTCCA
CATGGACTATACAGACATCATTGAAACGTTTTGACGACGAATTCCTGATT
GAAATGATCAAAGATGACGGAGCTACAAAGAAAACCATCACTGGATCATT
AACAAGGTATTGTAAAACGTTCAAAttccaaatatttttcttcaaatctt
ctGTAGATTGGTTTCCAGTTCTTATTCCTCTTTCTACTTGAGCAACACTT
TGTATCATTCCTTCCGAAATAATAACGGAGCATAGCTATAGAGAGTTGTT
ATAAGAAACTTCTCAAAACAGTTGGGGAGTTGGTCTTTTAAAGGACACTG
TCTTTTTAAAGTCCTAAAGCtgcttttgagttcagttttaTTTTCGACCT
CCATATAATACCTCCTTGTTGTAAACATTTCCAACATTTCTTTGACTTTA
GATCTTGGCGTGAATGAGCTGTAGATTTTCACCCGTTTTTCTCTCTTTCA
GAGGTTTTAGGATTTCGGATTCCCTATAGCTTCCATTTACAGATCTTACG
CAGCCTACGTGGATAACGTATACGAAAATAAGATTATCAATTCTCATTCA
CTTGTGATTTCATTTTGCTTTTTCAGCTCGGTTGCAAACTATGTTGATGT
GAACGGTGTCATCTTGGTCAATAAATTGAAAACAGATGTTTTAGCGCAAC
ACAAAGCAATGGGTAACGAGAAGAAAAACCAATAAGCTATGTTACAGTAG
ATCGAATCTGTACAGCAGTTAGATTTGAGCCAAAGTCTTTCTGGCAGATG
GTGGAAGAAAGTGATATTTTGTATAGAAGTTAggattttatttaatttgg
aagaaaatacacaatcaaaaaaaataattttacaacttGAAACATTCTCT
TCTTGAGATTTGTTAAAGCCTCGTTTTCAAAgtaacgatgtaaaaataat
tcagcattagtaaataaataataCCGTAATCTACAGTAGTTTTAATTTTC
G

Coding sequence (CDS) from alignment at scaffold_46:102027..113927+

>TCONS_00066753 ID=TCONS_00066753|Name=TCONS_00066753|organism=Clytia hemisphaerica|type=CDS|length=3438bp|location=Sequence derived from alignment at scaffold_46:102027..113927+ (Clytia hemisphaerica)
atgGGAAACGATGATAAGGTAGAAGAAATCAAGGTTGAAAAGTGGGATGG
AAATGCACTGAAGCATGCTTTAGATGATGCGGTTAGAAAGATATTCACAG
ACGACTTGAAATACATAGAGAAGAATACATATGTTGATGTGAGGCTGTTA
TTAAGTTTCCTTGGCGTGGCAGTGGCTGGTTATGCACTGATCTACGATTT
CCTGAACCCATTCCCAGCATCCAAATGGGTTTTAGCATTCTGTGTTATCT
CATACTTCATTTTCATGACAATTCTTACTGGATTTATGACGTTCGTCGAG
AAGAATATCATTTTACTGGCCACGCAAAAAGAAGCATCTGGACTGgatCC
TGACTCCACATGGACTATACAGACATCATTGAAACGTTTTGACGACGAAT
TCCTGATTGAAATGATCAAAGATGACGGAGCTACAAAGAAAACCATCACT
GGATCATTAACAAGCTCGGTTGCAAACTATGTTGATGTGAACGGTGTCAT
CTTGGTCAATAAATTGAAAACAGATGTTTTAGCGCAACACAAAGCAATGG
GTAACGAGAAGAAAAACCAATAAatgGGAAACGATGATAAGGTAGAAGAA
ATCAAGGTTGAAAAGTGGGATGGAAATGCACTGAAGCATGCTTTAGATGA
TGCGGTTAGAAAGATATTCACAGACGACTTGAAATACATAGAGAAGAATA
CATATGTTGATGTGAGGCTGTTATTAAGTTTCCTTGGCGTGGCAGTGGCT
GGTTATGCACTGATCTACGATTTCCTGAACCCATTCCCAGCATCCAAATG
GGTTTTAGCATTCTGTGTTATCTCATACTTCATTTTCATGACAATTCTTA
CTGGATTTATGACGTTCGTCGAGAAGAATATCATTTTACTGGCCACGCAA
AAAGAAGCATCTGGACTGgatCCTGACTCCACATGGACTATACAGACATC
ATTGAAACGTTTTGACGACGAATTCCTGATTGAAATGATCAAAGATGACG
GAGCTACAAAGAAAACCATCACTGGATCATTAACAAGCTCGGTTGCAAAC
TATGTTGATGTGAACGGTGTCATCTTGGTCAATAAATTGAAAACAGATGT
TTTAGCGCAACACAAAGCAATGGGTAACGAGAAGAAAAACCAATAAatgG
GAAACGATGATAAGGTAGAAGAAATCAAGGTTGAAAAGTGGGATGGAAAT
GCACTGAAGCATGCTTTAGATGATGCGGTTAGAAAGATATTCACAGACGA
CTTGAAATACATAGAGAAGAATACATATGTTGATGTGAGGCTGTTATTAA
GTTTCCTTGGCGTGGCAGTGGCTGGTTATGCACTGATCTACGATTTCCTG
AACCCATTCCCAGCATCCAAATGGGTTTTAGCATTCTGTGTTATCTCATA
CTTCATTTTCATGACAATTCTTACTGGATTTATGACGTTCGTCGAGAAGA
ATATCATTTTACTGGCCACGCAAAAAGAAGCATCTGGACTGgatCCTGAC
TCCACATGGACTATACAGACATCATTGAAACGTTTTGACGACGAATTCCT
GATTGAAATGATCAAAGATGACGGAGCTACAAAGAAAACCATCACTGGAT
CATTAACAAGCTCGGTTGCAAACTATGTTGATGTGAACGGTGTCATCTTG
GTCAATAAATTGAAAACAGATGTTTTAGCGCAACACAAAGCAATGGGTAA
CGAGAAGAAAAACCAATAAatgGGAAACGATGATAAGGTAGAAGAAATCA
AGGTTGAAAAGTGGGATGGAAATGCACTGAAGCATGCTTTAGATGATGCG
GTTAGAAAGATATTCACAGACGACTTGAAATACATAGAGAAGAATACATA
TGTTGATGTGAGGCTGTTATTAAGTTTCCTTGGCGTGGCAGTGGCTGGTT
ATGCACTGATCTACGATTTCCTGAACCCATTCCCAGCATCCAAATGGGTT
TTAGCATTCTGTGTTATCTCATACTTCATTTTCATGACAATTCTTACTGG
ATTTATGACGTTCGTCGAGAAGAATATCATTTTACTGGCCACGCAAAAAG
AAGCATCTGGACTGgatCCTGACTCCACATGGACTATACAGACATCATTG
AAACGTTTTGACGACGAATTCCTGATTGAAATGATCAAAGATGACGGAGC
TACAAAGAAAACCATCACTGGATCATTAACAAGCTCGGTTGCAAACTATG
TTGATGTGAACGGTGTCATCTTGGTCAATAAATTGAAAACAGATGTTTTA
GCGCAACACAAAGCAATGGGTAACGAGAAGAAAAACCAATAAatgGGAAA
CGATGATAAGGTAGAAGAAATCAAGGTTGAAAAGTGGGATGGAAATGCAC
TGAAGCATGCTTTAGATGATGCGGTTAGAAAGATATTCACAGACGACTTG
AAATACATAGAGAAGAATACATATGTTGATGTGAGGCTGTTATTAAGTTT
CCTTGGCGTGGCAGTGGCTGGTTATGCACTGATCTACGATTTCCTGAACC
CATTCCCAGCATCCAAATGGGTTTTAGCATTCTGTGTTATCTCATACTTC
ATTTTCATGACAATTCTTACTGGATTTATGACGTTCGTCGAGAAGAATAT
CATTTTACTGGCCACGCAAAAAGAAGCATCTGGACTGgatCCTGACTCCA
CATGGACTATACAGACATCATTGAAACGTTTTGACGACGAATTCCTGATT
GAAATGATCAAAGATGACGGAGCTACAAAGAAAACCATCACTGGATCATT
AACAAGCTCGGTTGCAAACTATGTTGATGTGAACGGTGTCATCTTGGTCA
ATAAATTGAAAACAGATGTTTTAGCGCAACACAAAGCAATGGGTAACGAG
AAGAAAAACCAATAAatgGGAAACGATGATAAGGTAGAAGAAATCAAGGT
TGAAAAGTGGGATGGAAATGCACTGAAGCATGCTTTAGATGATGCGGTTA
GAAAGATATTCACAGACGACTTGAAATACATAGAGAAGAATACATATGTT
GATGTGAGGCTGTTATTAAGTTTCCTTGGCGTGGCAGTGGCTGGTTATGC
ACTGATCTACGATTTCCTGAACCCATTCCCAGCATCCAAATGGGTTTTAG
CATTCTGTGTTATCTCATACTTCATTTTCATGACAATTCTTACTGGATTT
ATGACGTTCGTCGAGAAGAATATCATTTTACTGGCCACGCAAAAAGAAGC
ATCTGGACTGgatCCTGACTCCACATGGACTATACAGACATCATTGAAAC
GTTTTGACGACGAATTCCTGATTGAAATGATCAAAGATGACGGAGCTACA
AAGAAAACCATCACTGGATCATTAACAAGCTCGGTTGCAAACTATGTTGA
TGTGAACGGTGTCATCTTGGTCAATAAATTGAAAACAGATGTTTTAGCGC
AACACAAAGCAATGGGTAACGAGAAGAAAAACCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041747XLOC_041747Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066753-proteinTCONS_00066753-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066753-exon-scaffold_46-1491911889:102027..102302TCONS_00066753-exon-scaffold_46-1491911889:102027..102302Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1510915933:102027..102302TCONS_00066753-exon-scaffold_46-1510915933:102027..102302Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1575043694:102027..102302TCONS_00066753-exon-scaffold_46-1575043694:102027..102302Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1491911889:106569..106640TCONS_00066753-exon-scaffold_46-1491911889:106569..106640Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1510915933:106569..106640TCONS_00066753-exon-scaffold_46-1510915933:106569..106640Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1575043694:106569..106640TCONS_00066753-exon-scaffold_46-1575043694:106569..106640Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1491911889:111403..111563TCONS_00066753-exon-scaffold_46-1491911889:111403..111563Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1510915933:111403..111563TCONS_00066753-exon-scaffold_46-1510915933:111403..111563Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1575043694:111403..111563TCONS_00066753-exon-scaffold_46-1575043694:111403..111563Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1491911889:111764..111857TCONS_00066753-exon-scaffold_46-1491911889:111764..111857Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1510915933:111764..111857TCONS_00066753-exon-scaffold_46-1510915933:111764..111857Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1575043694:111764..111857TCONS_00066753-exon-scaffold_46-1575043694:111764..111857Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1491911889:112964..113082TCONS_00066753-exon-scaffold_46-1491911889:112964..113082Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1510915933:112964..113082TCONS_00066753-exon-scaffold_46-1510915933:112964..113082Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1575043694:112964..113082TCONS_00066753-exon-scaffold_46-1575043694:112964..113082Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1491911889:113553..113927TCONS_00066753-exon-scaffold_46-1491911889:113553..113927Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1510915933:113553..113927TCONS_00066753-exon-scaffold_46-1510915933:113553..113927Clytia hemisphaericaexon
TCONS_00066753-exon-scaffold_46-1575043694:113553..113927TCONS_00066753-exon-scaffold_46-1575043694:113553..113927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:102027..113927 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
273.354	269.252	257.303	258.945	79.6318	65.5658	184.709	184.608	214.359	198.21	141.953	142.513	92.6534	79.3613	93.8078	111.942	123.178	108.423	46.8447	76.1738	101.67	94.2264	136.647	126.19	66.7877	66.9185	86.5019	69.2817	122.434	98.3108
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009582SigPept_cplx_su2
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005787signal peptidase complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006465 signal peptide processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005787 signal peptidase complex
molecular_function GO:0008233 peptidase activity
Blast
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BLAST of TCONS_00066753 vs. Swiss-Prot (Human)
Match: SPCS2 (Signal peptidase complex subunit 2 OS=Homo sapiens GN=SPCS2 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 3.118e-44
Identity = 72/185 (38.92%), Postives = 122/185 (65.95%), Query Frame = 1 
Query:  268 DDKVEEIKVEKWDGNALKHALDDAVRKIFTDDLKYIEKNTYVDVRLLLSFLGVAVAGYALIYDFLNPFPASKWVLAFCVISYFIFMTILTGFMTFVEKNIILLATQKEASGLDPDSTWTIQTSLKRFDDEFLIEMIKDDGATKKTITGSLTSSVANYVDVNGVILVNKLKTDVLAQHKAMGNEKK 822
            DDK   +K++KWDG+A+K++LDD+ +K+  +  KY+E    +D RL +  +    A  ALI+D+++PFP SK VLA CVISYF+ M ILT + ++ EK+I L+A +K+ +G+DPD  W + +SLKRFDD++ +++    G TK+      T S+A + D +G ++++  + ++   H ++  E+K
Sbjct:   42 DDK--PVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERK 224
The following BLAST results are available for this feature:
BLAST of TCONS_00066753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPCS23.118e-4438.92Signal peptidase complex subunit 2 OS=Homo sapiens... [more]
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