Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00066753-protein ID=TCONS_00066753-protein|Name=TCONS_00066753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MGNDDKVEEIKVEKWDGNALKHALDDAVRKIFTDDLKYIEKNTYVDVRLL
LSFLGVAVAGYALIYDFLNPFPASKWVLAFCVISYFIFMTILTGFMTFVE
KNIILLATQKEASGLDPDSTWTIQTSLKRFDDEFLIEMIKDDGATKKTIT
GSLTSSVANYVDVNGVILVNKLKTDVLAQHKAMGNEKKNQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009582 | SigPept_cplx_su2 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006465 | signal peptide processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008233 | peptidase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0005787 | signal peptidase complex |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006465 |
signal peptide processing |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0005787 |
signal peptidase complex |
| molecular_function |
GO:0008233 |
peptidase activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR009582 | Signal peptidase complex subunit 2 | PFAM | PF06703 | SPC25 | coord: 19..179
e-value: 1.8E-39
score: 135.0 |
Blast
BLAST of TCONS_00066753-protein vs. Swiss-Prot (Human)
Match: SPCS2 (Signal peptidase complex subunit 2 OS=Homo sapiens GN=SPCS2 PE=1 SV=3) HSP 1 Score: 154.836 bits (390), Expect = 1.236e-47 Identity = 72/185 (38.92%), Postives = 122/185 (65.95%), Query Frame = 0 Query: 4 DDKVEEIKVEKWDGNALKHALDDAVRKIFTDDLKYIEKNTYVDVRLLLSFLGVAVAGYALIYDFLNPFPASKWVLAFCVISYFIFMTILTGFMTFVEKNIILLATQKEASGLDPDSTWTIQTSLKRFDDEFLIEMIKDDGATKKTITGSLTSSVANYVDVNGVILVNKLKTDVLAQHKAMGNEKK 188
DDK +K++KWDG+A+K++LDD+ +K+ + KY+E +D RL + + A ALI+D+++PFP SK VLA CVISYF+ M ILT + ++ EK+I L+A +K+ +G+DPD W + +SLKRFDD++ +++ G TK+ T S+A + D +G ++++ + ++ H ++ E+K
Sbjct: 42 DDK--PVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERK 224
The following BLAST results are available for this feature:
BLAST of TCONS_00066753-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| SPCS2 | 1.236e-47 | 38.92 | Signal peptidase complex subunit 2 OS=Homo sapiens... | [more] |
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