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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066723 ID=TCONS_00066723|Name=TCONS_00066723|organism=Clytia hemisphaerica|type=transcript|length=4498bpRun BLAST on NCBI protein sequence of TCONS_00066723-protein >TCONS_00066723-protein ID=TCONS_00066723-protein|Name=TCONS_00066723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=966bp MANGESELDVGRKELTLDRPPSLSNSPNSSPNSLKRDLALKHDDSLMCPSRun BLAST on NCBI transcript from alignment at scaffold_459:149946..165028+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066723 ID=TCONS_00066723|Name=TCONS_00066723|organism=Clytia hemisphaerica|type=transcript|length=15083bp|location=Sequence derived from alignment at scaffold_459:149946..165028+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_459:149946..165028+ >TCONS_00066723 ID=TCONS_00066723|Name=TCONS_00066723|organism=Clytia hemisphaerica|type=CDS|length=31911bp|location=Sequence derived from alignment at scaffold_459:149946..165028+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066723 vs. Swiss-Prot (Human)
Match: PPR37 (Protein phosphatase 1 regulatory subunit 37 OS=Homo sapiens GN=PPP1R37 PE=1 SV=4) HSP 1 Score: 395.201 bits (1014), Expect = 6.073e-120 Identity = 214/458 (46.72%), Postives = 296/458 (64.63%), Query Frame = 3
Query: 753 AKPPQESPHQSEAKRNVNFPGYDNYVKEFIDPVDPWRNVQTPSKGEVISFYKNSCQKQKTKANEKVIKQIQDITDLSIRASTLVLRGSRMDNRSCEALESIFRRIQFENLDLENCSLEEDGATALLEMIEFYHSTCKLNIACNPKIGMRGWQALCRMLRKTPCLTYLDARRTLLTDMTMPTFGRCLKADPPLKILHLEGVFLSGRPMLILTTAMKYNKILEELYXXXXXXXXXXXXP-IGAMLTYNTTLQLLDLRNNQIKDVGLAHVCNGLSDQSEQNHGGLCSLILWNNGLTHEGMTYLTEGLVHTQSLKALNLGHNRVGDFGIQKLKSGLIKNKSLHKLGFLNTKLGSEGAVALAEVLADSLCITRIDIRENNIQTAGLMAFSMALKVNQSXXXXXXXXXXXXEPGMEQV------MQTVLVDIYNFCHRNKQLARQSLTQSMASSISSNEPSATT 2105
A PP + ++ AKR V FP ++ V ++P DPWR+ Q + EVI YK +CQK + K+++Q+Q+ TDL R L L+G ++D ++CEALE +F+R+QF+ +DLE +L+EDGA+AL +MIE+Y S LNI+ N IG RGWQA M+RKT CL YLDAR T L D + P R L+ L +LHLE LSGRP+++L TA+K N L ELYL DN L+ S +G +L +N +LQ+LDLRNN + D GLA++C GL +Q + GL +L+LWNN LTH GM +L L HTQSL+ LNLGHN +G+ G++ LK+GLI N+S+ +LG +TKL EGAVA+AE +A+S + R+D+REN I+T GLMA S+ALKVN S L D+ +EP E V + +L +I N C RN LAR+ + +S++ P T
Sbjct: 31 ASPPADGRLKAAAKR-VTFPSDEDIVSGAVEPKDPWRHAQNVTVDEVIGAYKQACQKLNCRQIPKLLRQLQEFTDLGHRLDCLDLKGEKLDYKTCEALEEVFKRLQFKVVDLEQTNLDEDGASALFDMIEYYESATHLNISFNKHIGTRGWQAAAHMMRKTSCLQYLDARNTPLLDHSAPFVARALRIRSSLAVLHLENASLSGRPLMLLATALKMNMNLRELYLADNKLNGLQDSAQLGNLLKFNCSLQILDLRNNHVLDSGLAYICEGLKEQRK----GLVTLVLWNNQLTHTGMAFLGMTLPHTQSLETLNLGHNPIGNEGVRHLKNGLISNRSVLRLGLASTKLTCEGAVAVAEFIAESPRLLRLDLRENEIKTGGLMALSLALKVNHS----LLRLDLDREPKKEAVKSFIETQKALLAEIQNGCKRNLVLAREREEKEQPPQLSASMPETTA 479 The following BLAST results are available for this feature:
BLAST of TCONS_00066723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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