TCONS_00066723-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066723-protein
Unique Name	TCONS_00066723-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	966

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066723-protein ID=TCONS_00066723-protein|Name=TCONS_00066723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=966bp
MANGESELDVGRKELTLDRPPSLSNSPNSSPNSLKRDLALKHDDSLMCPS
PLTVNNDDILQQIKASQSLDSSSEDITENTLSVKNETNENNEETTEKILE
PLSNSELKEERVNGLIDSIKDSPNDENKRNEEETIFHEDHYSNESHINNS
TKENSSKRRLSSNSGNQSPSKTRYFHSKDLTSCLKKAKPPQESPHQSEAK
RNVNFPGYDNYVKEFIDPVDPWRNVQTPSKGEVISFYKNSCQKQKTKANE
KVIKQIQDITDLSIRASTLVLRGSRMDNRSCEALESIFRRIQFENLDLEN
CSLEEDGATALLEMIEFYHSTCKLNIACNPKIGMRGWQALCRMLRKTPCL
TYLDARRTLLTDMTMPTFGRCLKADPPLKILHLEGVFLSGRPMLILTTAM
KYNKILEELYLGDNDLSSSDGSPIGAMLTYNTTLQLLDLRNNQIKDVGLA
HVCNGLSDQSEQNHGGLCSLILWNNGLTHEGMTYLTEGLVHTQSLKALNL
GHNRVGDFGIQKLKSGLIKNKSLHKLGFLNTKLGSEGAVALAEVLADSLC
ITRIDIRENNIQTAGLMAFSMALKVNQSLLRLDLDKDIRKEPGMEQVMQT
VLVDIYNFCHRNKQLARQSLTQSMASSISSNEPSATTNITRQASTESNSE
YDCIVSDDVFHPEGGKQPITPFSPVFTDQKQMSMKFPLHFDKGAGPSEPT
TNAQQIPHTQKELISAISSSPPAIPKETGVHILNKPPANSSERRANRFSV
TKILDSLGNHAAGVANKIANVTSLDSKLKKQTPKDAVSIAEAHSMDVKTV
ETKTNPNSKQIETESERDSQPGTQSEQTSLSLDCTTKPPPNDDHIIYSPM
EIIDVSETNDPLGLREQSQSSESEAAKETLKQESTSLETPHSGNDILENG
LSKLVSEVSIDETVSTTTSSDFDAQKVDDGDEVGSNFPVTDSNSILGNTG
SIVVTGQQPIPVDASL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041728	XLOC_041728	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066723	TCONS_00066723	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR032675	L_dom-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 464..491 e-value: 13.0 score: 9.2 coord: 492..519 e-value: 0.0058 score: 25.8 coord: 403..430 e-value: 4.6 score: 12.5 coord: 520..547 e-value: 0.026 score: 23.7 coord: 548..575 e-value: 13.0 score: 9.3 coord: 431..458 e-value: 3.5E-4 score: 29.9 coord: 290..317 e-value: 6.2 score: 11.6
None	No IPR available	GENE3D	3.40.50.2000		coord: 410..493 e-value: 6.6E-17 score: 61.4 coord: 494..657 e-value: 1.2E-16 score: 60.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 626..647
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 791..846
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 861..897
None	No IPR available	CDD	cd00116	LRR_RI	coord: 279..587 e-value: 3.60562E-50 score: 179.474
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 219..586
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 492..513 e-value: 0.094 score: 12.7 coord: 430..452 e-value: 0.0027 score: 17.5 coord: 550..570 e-value: 0.77 score: 9.9
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 244..409 e-value: 2.2E-13 score: 49.2

Blast

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BLAST of TCONS_00066723-protein vs. Swiss-Prot (Human)
Match: PPR37 (Protein phosphatase 1 regulatory subunit 37 OS=Homo sapiens GN=PPP1R37 PE=1 SV=4)

HSP 1 Score: 432.18 bits (1110), Expect = 3.359e-139
Identity = 217/454 (47.80%), Postives = 302/454 (66.52%), Query Frame = 0

Query:  187 AKPPQESPHQSEAKRNVNFPGYDNYVKEFIDPVDPWRNVQTPSKGEVISFYKNSCQKQKTKANEKVIKQIQDITDLSIRASTLVLRGSRMDNRSCEALESIFRRIQFENLDLENCSLEEDGATALLEMIEFYHSTCKLNIACNPKIGMRGWQALCRMLRKTPCLTYLDARRTLLTDMTMPTFGRCLKADPPLKILHLEGVFLSGRPMLILTTAMKYNKILEELYLGDNDLSS-SDGSPIGAMLTYNTTLQLLDLRNNQIKDVGLAHVCNGLSDQSEQNHGGLCSLILWNNGLTHEGMTYLTEGLVHTQSLKALNLGHNRVGDFGIQKLKSGLIKNKSLHKLGFLNTKLGSEGAVALAEVLADSLCITRIDIRENNIQTAGLMAFSMALKVNQSLLRLDLDKDIRKEP--GMEQVMQTVLVDIYNFCHRNKQLARQSLTQSMASSISSNEPSATT 637
            A PP +   ++ AKR V FP  ++ V   ++P DPWR+ Q  +  EVI  YK +CQK   +   K+++Q+Q+ TDL  R   L L+G ++D ++CEALE +F+R+QF+ +DLE  +L+EDGA+AL +MIE+Y S   LNI+ N  IG RGWQA   M+RKT CL YLDAR T L D + P   R L+    L +LHLE   LSGRP+++L TA+K N  L ELYL DN L+   D + +G +L +N +LQ+LDLRNN + D GLA++C GL +Q +    GL +L+LWNN LTH GM +L   L HTQSL+ LNLGHN +G+ G++ LK+GLI N+S+ +LG  +TKL  EGAVA+AE +A+S  + R+D+REN I+T GLMA S+ALKVN SLLRLDLD++ +KE      +  + +L +I N C RN  LAR+   +     +S++ P  T 
Sbjct:   31 ASPPADGRLKAAAKR-VTFPSDEDIVSGAVEPKDPWRHAQNVTVDEVIGAYKQACQKLNCRQIPKLLRQLQEFTDLGHRLDCLDLKGEKLDYKTCEALEEVFKRLQFKVVDLEQTNLDEDGASALFDMIEYYESATHLNISFNKHIGTRGWQAAAHMMRKTSCLQYLDARNTPLLDHSAPFVARALRIRSSLAVLHLENASLSGRPLMLLATALKMNMNLRELYLADNKLNGLQDSAQLGNLLKFNCSLQILDLRNNHVLDSGLAYICEGLKEQRK----GLVTLVLWNNQLTHTGMAFLGMTLPHTQSLETLNLGHNPIGNEGVRHLKNGLISNRSVLRLGLASTKLTCEGAVAVAEFIAESPRLLRLDLRENEIKTGGLMALSLALKVNHSLLRLDLDREPKKEAVKSFIETQKALLAEIQNGCKRNLVLAREREEKEQPPQLSASMPETTA 479

The following BLAST results are available for this feature:

BLAST of TCONS_00066723-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066723-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
PPR37	3.359e-139	47.80	Protein phosphatase 1 regulatory subunit 37 OS=Hom...	[more]

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TCONS_00066723-protein (polypeptide) - C. hemisphaerica

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