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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066625 ID=TCONS_00066625|Name=TCONS_00066625|organism=Clytia hemisphaerica|type=transcript|length=1582bp
ttcgttttcttttaaatttatctaaaatattaacaaataaaaaataaatt
atgaacTGTTGTATTGTTTTAGTAATAATATATAAATTGTCAAATCGATA
ATAAGAATTTCTTCATTTATATTTATACGTCGATAGCAAAATAACCTACT
ACCATAAGAAGTAAATCACTCTCACTATCGAAAAATTGCGTTGCTTTCAA
CTTTTCTGAAACCTAGTTCTATACTTTCAATATTATTTGAGGAAGGAgtt
tttgtttcgtttttttGGGCGCGTGGAAAAGATAAACGACATCAAATCTG
TCTTAGATTAAGGTTAATCCTTTGAATAAGAGAACAGAATACCTTAGTAT
GAGGAGGGCAGGGACAGGAGGGGTTAGGAAGAGCTGGGAAGAGCGTAAGT
TCCAAATCTTAAATATTATTTCACCGGAACCACCAAGATCTTCTTTTAGC
TCTGTTATCAGTAGCTGTTGAGTTCGAATTTGCCGTGGCCGAAACCGTTT
TGGAAGGAGAGTTCGTAGGAGTGACGTCGTTATTATTGGGGCAGGGCGCT
GATTTGGCAATATCATCAGCGTTCATGAGTAGAGCTTGATGGTGCGAATG
TAGTTCATCTCTCAACGATAATTCTTGCACCAATTCCAAATTAATCTCTG
CTACTCTTATCTCAAGTTCTTCTTTCAAAATTGTTAATTCTTCGAAACTT
TTCTTGAACAGATTAGCTTTGTATTCGTTTTGTTGGTACGATTGTGATTC
GCGTTCTTTTCGTTCACGCTCTTCACTTTCCTCGTGGAGTTGTAACGTTG
TCAACATCATGTGTGAAATCTCGGAAGGTTCCAACGAACCACGTCGTTTC
TCACTGACATCATCGGTAACATATTCAATGTCATGTTCATACATATCTGA
AGTCACGAATCCAGAATCTCTAGAATCTATATTGCGTCCATCAGCATCAG
GTCCGGTCAGATCAGTACTGGATATTGATTGTCCTTTTCGAAACAAGAAA
TCTTGGTTATCTTCATAATATACTTCGACATCTGGTATACTTTCTTTATC
ACTTTCAGAATCAACAAACGTCATCTGCATTTGCGGTTTTTTCTCCGGAG
AACACATCTCCAAAGCTGTCAAGGTTGATTCTGAACTCGGCATCTCTTGG
CGTTCCTTGGTGGGCGTTAATAGAGTATCAATTGTATTCCAATCAGTCGA
TGATACAGGTAAAGAACCTTCTAAATCAACATAATCCTCAAATTCGTTAT
CCGATATAAATTCACCAGAACAACTGTGAGAATAACTACCAGAGGAAATA
AGATTCTCGCGTGTCACCGTGTCGGCCGCCACTTTGGAAGCTgatttttt
cgacttttttttcTTGTCAACCACACAGTAGCAACTTTCGTATCTTCCGT
CCAGACAAGCGTTACATATACCGTTCTTGGAAAGTGTCCAGATATCAAGG
GACGTTGTTGATTCACCAATCGTTGCCAAAGCCATTCATACcataaaaaa
aagacaatatccaaatacaaaaaaattacaaCCAAAGTCTTCGTTGAATT
TCTTTGAACCgtggtttttgtttttaatgctG Run BLAST on NCBI protein sequence of TCONS_00066625-protein >TCONS_00066625-protein ID=TCONS_00066625-protein|Name=TCONS_00066625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MALATIGESTTSLDIWTLSKNGICNACLDGRYESCYCVVDKKKKSKKSAS
KVAADTVTRENLISSGSYSHSCSGEFISDNEFEDYVDLEGSLPVSSTDWN
TIDTLLTPTKERQEMPSSESTLTALEMCSPEKKPQMQMTFVDSESDKESI
PDVEVYYEDNQDFLFRKGQSISSTDLTGPDADGRNIDSRDSGFVTSDMYE
HDIEYVTDDVSEKRRGSLEPSEISHMMLTTLQLHEESEERERKERESQSY
QQNEYKANLFKKSFEELTILKEELEIRVAEINLELVQELSLRDELHSHHQ
ALLMNADDIAKSAPCPNNNDVTPTNSPSKTVSATANSNSTATDNRAKRRS
WWFR Run BLAST on NCBI transcript from alignment at scaffold_456:818389..819970 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066625 ID=TCONS_00066625|Name=TCONS_00066625|organism=Clytia hemisphaerica|type=transcript|length=1582bp|location=Sequence derived from alignment at scaffold_456:818389..819970 (Clytia hemisphaerica)
CagcattaaaaacaaaaaccacGGTTCAAAGAAATTCAACGAAGACTTTG
GttgtaatttttttgtatttggatattgtcttttttttatgGTATGAATG
GCTTTGGCAACGATTGGTGAATCAACAACGTCCCTTGATATCTGGACACT
TTCCAAGAACGGTATATGTAACGCTTGTCTGGACGGAAGATACGAAAGTT
GCTACTGTGTGGTTGACAAgaaaaaaaagtcgaaaaaatcAGCTTCCAAA
GTGGCGGCCGACACGGTGACACGCGAGAATCTTATTTCCTCTGGTAGTTA
TTCTCACAGTTGTTCTGGTGAATTTATATCGGATAACGAATTTGAGGATT
ATGTTGATTTAGAAGGTTCTTTACCTGTATCATCGACTGATTGGAATACA
ATTGATACTCTATTAACGCCCACCAAGGAACGCCAAGAGATGCCGAGTTC
AGAATCAACCTTGACAGCTTTGGAGATGTGTTCTCCGGAGAAAAAACCGC
AAATGCAGATGACGTTTGTTGATTCTGAAAGTGATAAAGAAAGTATACCA
GATGTCGAAGTATATTATGAAGATAACCAAGATTTCTTGTTTCGAAAAGG
ACAATCAATATCCAGTACTGATCTGACCGGACCTGATGCTGATGGACGCA
ATATAGATTCTAGAGATTCTGGATTCGTGACTTCAGATATGTATGAACAT
GACATTGAATATGTTACCGATGATGTCAGTGAGAAACGACGTGGTTCGTT
GGAACCTTCCGAGATTTCACACATGATGTTGACAACGTTACAACTCCACG
AGGAAAGTGAAGAGCGTGAACGAAAAGAACGCGAATCACAATCGTACCAA
CAAAACGAATACAAAGCTAATCTGTTCAAGAAAAGTTTCGAAGAATTAAC
AATTTTGAAAGAAGAACTTGAGATAAGAGTAGCAGAGATTAATTTGGAAT
TGGTGCAAGAATTATCGTTGAGAGATGAACTACATTCGCACCATCAAGCT
CTACTCATGAACGCTGATGATATTGCCAAATCAGCGCCCTGCCCCAATAA
TAACGACGTCACTCCTACGAACTCTCCTTCCAAAACGGTTTCGGCCACGG
CAAATTCGAACTCAACAGCTACTGATAACAGAGCTAAAAGAAGATCTTGG
TGGTTCCGGTGAAATAATATTTAAGATTTGGAACTTACGCTCTTCCCAGC
TCTTCCTAACCCCTCCTGTCCCTGCCCTCCTCATACTAAGGTATTCTGTT
CTCTTATTCAAAGGATTAACCTTAATCTAAGACAGATTTGATGTCGTTTA
TCTTTTCCACGCGCCCaaaaaaacgaaacaaaaacTCCTTCCTCAAATAA
TATTGAAAGTATAGAACTAGGTTTCAGAAAAGTTGAAAGCAACGCAATTT
TTCGATAGTGAGAGTGATTTACTTCTTATGGTAGTAGGTTATTTTGCTAT
CGACGTATAAATATAAATGAAGAAATTCTTATTATCGATTTGACAATTTA
TATATTATTACTAAAACAATACAACAgttcataatttattttttatttgt
taatattttagataaatttaaaagaaaacgaa Coding sequence (CDS) from alignment at scaffold_456:818389..819970 >TCONS_00066625 ID=TCONS_00066625|Name=TCONS_00066625|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_456:818389..819970 (Clytia hemisphaerica)
ATGGCTTTGGCAACGATTGGTGAATCAACAACGTCCCTTGATATCTGGAC
ACTTTCCAAGAACGGTATATGTAACGCTTGTCTGGACGGAAGATACGAAA
GTTGCTACTGTGTGGTTGACAAgaaaaaaaagtcgaaaaaatcAGCTTCC
AAAGTGGCGGCCGACACGGTGACACGCGAGAATCTTATTTCCTCTGGTAG
TTATTCTCACAGTTGTTCTGGTGAATTTATATCGGATAACGAATTTGAGG
ATTATGTTGATTTAGAAGGTTCTTTACCTGTATCATCGACTGATTGGAAT
ACAATTGATACTCTATTAACGCCCACCAAGGAACGCCAAGAGATGCCGAG
TTCAGAATCAACCTTGACAGCTTTGGAGATGTGTTCTCCGGAGAAAAAAC
CGCAAATGCAGATGACGTTTGTTGATTCTGAAAGTGATAAAGAAAGTATA
CCAGATGTCGAAGTATATTATGAAGATAACCAAGATTTCTTGTTTCGAAA
AGGACAATCAATATCCAGTACTGATCTGACCGGACCTGATGCTGATGGAC
GCAATATAGATTCTAGAGATTCTGGATTCGTGACTTCAGATATGTATGAA
CATGACATTGAATATGTTACCGATGATGTCAGTGAGAAACGACGTGGTTC
GTTGGAACCTTCCGAGATTTCACACATGATGTTGACAACGTTACAACTCC
ACGAGGAAAGTGAAGAGCGTGAACGAAAAGAACGCGAATCACAATCGTAC
CAACAAAACGAATACAAAGCTAATCTGTTCAAGAAAAGTTTCGAAGAATT
AACAATTTTGAAAGAAGAACTTGAGATAAGAGTAGCAGAGATTAATTTGG
AATTGGTGCAAGAATTATCGTTGAGAGATGAACTACATTCGCACCATCAA
GCTCTACTCATGAACGCTGATGATATTGCCAAATCAGCGCCCTGCCCCAA
TAATAACGACGTCACTCCTACGAACTCTCCTTCCAAAACGGTTTCGGCCA
CGGCAAATTCGAACTCAACAGCTACTGATAACAGAGCTAAAAGAAGATCT
TGGTGGTTCCGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066625-exon-scaffold_456-1491911889:818389..819970 | TCONS_00066625-exon-scaffold_456-1491911889:818389..819970 | Clytia hemisphaerica | exon |
| TCONS_00066625-exon-scaffold_456-1510915933:818389..819970 | TCONS_00066625-exon-scaffold_456-1510915933:818389..819970 | Clytia hemisphaerica | exon |
| TCONS_00066625-exon-scaffold_456-1575043694:818389..819970 | TCONS_00066625-exon-scaffold_456-1575043694:818389..819970 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:818389..819970 . |
Blast
The following BLAST results are available for this feature:
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