TCONS_00066625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066625
Unique NameTCONS_00066625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066625 ID=TCONS_00066625|Name=TCONS_00066625|organism=Clytia hemisphaerica|type=transcript|length=1582bp
ttcgttttcttttaaatttatctaaaatattaacaaataaaaaataaatt
atgaacTGTTGTATTGTTTTAGTAATAATATATAAATTGTCAAATCGATA
ATAAGAATTTCTTCATTTATATTTATACGTCGATAGCAAAATAACCTACT
ACCATAAGAAGTAAATCACTCTCACTATCGAAAAATTGCGTTGCTTTCAA
CTTTTCTGAAACCTAGTTCTATACTTTCAATATTATTTGAGGAAGGAgtt
tttgtttcgtttttttGGGCGCGTGGAAAAGATAAACGACATCAAATCTG
TCTTAGATTAAGGTTAATCCTTTGAATAAGAGAACAGAATACCTTAGTAT
GAGGAGGGCAGGGACAGGAGGGGTTAGGAAGAGCTGGGAAGAGCGTAAGT
TCCAAATCTTAAATATTATTTCACCGGAACCACCAAGATCTTCTTTTAGC
TCTGTTATCAGTAGCTGTTGAGTTCGAATTTGCCGTGGCCGAAACCGTTT
TGGAAGGAGAGTTCGTAGGAGTGACGTCGTTATTATTGGGGCAGGGCGCT
GATTTGGCAATATCATCAGCGTTCATGAGTAGAGCTTGATGGTGCGAATG
TAGTTCATCTCTCAACGATAATTCTTGCACCAATTCCAAATTAATCTCTG
CTACTCTTATCTCAAGTTCTTCTTTCAAAATTGTTAATTCTTCGAAACTT
TTCTTGAACAGATTAGCTTTGTATTCGTTTTGTTGGTACGATTGTGATTC
GCGTTCTTTTCGTTCACGCTCTTCACTTTCCTCGTGGAGTTGTAACGTTG
TCAACATCATGTGTGAAATCTCGGAAGGTTCCAACGAACCACGTCGTTTC
TCACTGACATCATCGGTAACATATTCAATGTCATGTTCATACATATCTGA
AGTCACGAATCCAGAATCTCTAGAATCTATATTGCGTCCATCAGCATCAG
GTCCGGTCAGATCAGTACTGGATATTGATTGTCCTTTTCGAAACAAGAAA
TCTTGGTTATCTTCATAATATACTTCGACATCTGGTATACTTTCTTTATC
ACTTTCAGAATCAACAAACGTCATCTGCATTTGCGGTTTTTTCTCCGGAG
AACACATCTCCAAAGCTGTCAAGGTTGATTCTGAACTCGGCATCTCTTGG
CGTTCCTTGGTGGGCGTTAATAGAGTATCAATTGTATTCCAATCAGTCGA
TGATACAGGTAAAGAACCTTCTAAATCAACATAATCCTCAAATTCGTTAT
CCGATATAAATTCACCAGAACAACTGTGAGAATAACTACCAGAGGAAATA
AGATTCTCGCGTGTCACCGTGTCGGCCGCCACTTTGGAAGCTgatttttt
cgacttttttttcTTGTCAACCACACAGTAGCAACTTTCGTATCTTCCGT
CCAGACAAGCGTTACATATACCGTTCTTGGAAAGTGTCCAGATATCAAGG
GACGTTGTTGATTCACCAATCGTTGCCAAAGCCATTCATACcataaaaaa
aagacaatatccaaatacaaaaaaattacaaCCAAAGTCTTCGTTGAATT
TCTTTGAACCgtggtttttgtttttaatgctG
Run BLAST on NCBI

protein sequence of TCONS_00066625-protein

>TCONS_00066625-protein ID=TCONS_00066625-protein|Name=TCONS_00066625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MALATIGESTTSLDIWTLSKNGICNACLDGRYESCYCVVDKKKKSKKSAS
KVAADTVTRENLISSGSYSHSCSGEFISDNEFEDYVDLEGSLPVSSTDWN
TIDTLLTPTKERQEMPSSESTLTALEMCSPEKKPQMQMTFVDSESDKESI
PDVEVYYEDNQDFLFRKGQSISSTDLTGPDADGRNIDSRDSGFVTSDMYE
HDIEYVTDDVSEKRRGSLEPSEISHMMLTTLQLHEESEERERKERESQSY
QQNEYKANLFKKSFEELTILKEELEIRVAEINLELVQELSLRDELHSHHQ
ALLMNADDIAKSAPCPNNNDVTPTNSPSKTVSATANSNSTATDNRAKRRS
WWFR
Run BLAST on NCBI

transcript from alignment at scaffold_456:818389..819970

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066625 ID=TCONS_00066625|Name=TCONS_00066625|organism=Clytia hemisphaerica|type=transcript|length=1582bp|location=Sequence derived from alignment at scaffold_456:818389..819970 (Clytia hemisphaerica)
CagcattaaaaacaaaaaccacGGTTCAAAGAAATTCAACGAAGACTTTG GttgtaatttttttgtatttggatattgtcttttttttatgGTATGAATG GCTTTGGCAACGATTGGTGAATCAACAACGTCCCTTGATATCTGGACACT TTCCAAGAACGGTATATGTAACGCTTGTCTGGACGGAAGATACGAAAGTT GCTACTGTGTGGTTGACAAgaaaaaaaagtcgaaaaaatcAGCTTCCAAA GTGGCGGCCGACACGGTGACACGCGAGAATCTTATTTCCTCTGGTAGTTA TTCTCACAGTTGTTCTGGTGAATTTATATCGGATAACGAATTTGAGGATT ATGTTGATTTAGAAGGTTCTTTACCTGTATCATCGACTGATTGGAATACA ATTGATACTCTATTAACGCCCACCAAGGAACGCCAAGAGATGCCGAGTTC AGAATCAACCTTGACAGCTTTGGAGATGTGTTCTCCGGAGAAAAAACCGC AAATGCAGATGACGTTTGTTGATTCTGAAAGTGATAAAGAAAGTATACCA GATGTCGAAGTATATTATGAAGATAACCAAGATTTCTTGTTTCGAAAAGG ACAATCAATATCCAGTACTGATCTGACCGGACCTGATGCTGATGGACGCA ATATAGATTCTAGAGATTCTGGATTCGTGACTTCAGATATGTATGAACAT GACATTGAATATGTTACCGATGATGTCAGTGAGAAACGACGTGGTTCGTT GGAACCTTCCGAGATTTCACACATGATGTTGACAACGTTACAACTCCACG AGGAAAGTGAAGAGCGTGAACGAAAAGAACGCGAATCACAATCGTACCAA CAAAACGAATACAAAGCTAATCTGTTCAAGAAAAGTTTCGAAGAATTAAC AATTTTGAAAGAAGAACTTGAGATAAGAGTAGCAGAGATTAATTTGGAAT TGGTGCAAGAATTATCGTTGAGAGATGAACTACATTCGCACCATCAAGCT CTACTCATGAACGCTGATGATATTGCCAAATCAGCGCCCTGCCCCAATAA TAACGACGTCACTCCTACGAACTCTCCTTCCAAAACGGTTTCGGCCACGG CAAATTCGAACTCAACAGCTACTGATAACAGAGCTAAAAGAAGATCTTGG TGGTTCCGGTGAAATAATATTTAAGATTTGGAACTTACGCTCTTCCCAGC TCTTCCTAACCCCTCCTGTCCCTGCCCTCCTCATACTAAGGTATTCTGTT CTCTTATTCAAAGGATTAACCTTAATCTAAGACAGATTTGATGTCGTTTA TCTTTTCCACGCGCCCaaaaaaacgaaacaaaaacTCCTTCCTCAAATAA TATTGAAAGTATAGAACTAGGTTTCAGAAAAGTTGAAAGCAACGCAATTT TTCGATAGTGAGAGTGATTTACTTCTTATGGTAGTAGGTTATTTTGCTAT CGACGTATAAATATAAATGAAGAAATTCTTATTATCGATTTGACAATTTA TATATTATTACTAAAACAATACAACAgttcataatttattttttatttgt taatattttagataaatttaaaagaaaacgaa

Coding sequence (CDS) from alignment at scaffold_456:818389..819970

>TCONS_00066625 ID=TCONS_00066625|Name=TCONS_00066625|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_456:818389..819970 (Clytia hemisphaerica)
ATGGCTTTGGCAACGATTGGTGAATCAACAACGTCCCTTGATATCTGGAC
ACTTTCCAAGAACGGTATATGTAACGCTTGTCTGGACGGAAGATACGAAA
GTTGCTACTGTGTGGTTGACAAgaaaaaaaagtcgaaaaaatcAGCTTCC
AAAGTGGCGGCCGACACGGTGACACGCGAGAATCTTATTTCCTCTGGTAG
TTATTCTCACAGTTGTTCTGGTGAATTTATATCGGATAACGAATTTGAGG
ATTATGTTGATTTAGAAGGTTCTTTACCTGTATCATCGACTGATTGGAAT
ACAATTGATACTCTATTAACGCCCACCAAGGAACGCCAAGAGATGCCGAG
TTCAGAATCAACCTTGACAGCTTTGGAGATGTGTTCTCCGGAGAAAAAAC
CGCAAATGCAGATGACGTTTGTTGATTCTGAAAGTGATAAAGAAAGTATA
CCAGATGTCGAAGTATATTATGAAGATAACCAAGATTTCTTGTTTCGAAA
AGGACAATCAATATCCAGTACTGATCTGACCGGACCTGATGCTGATGGAC
GCAATATAGATTCTAGAGATTCTGGATTCGTGACTTCAGATATGTATGAA
CATGACATTGAATATGTTACCGATGATGTCAGTGAGAAACGACGTGGTTC
GTTGGAACCTTCCGAGATTTCACACATGATGTTGACAACGTTACAACTCC
ACGAGGAAAGTGAAGAGCGTGAACGAAAAGAACGCGAATCACAATCGTAC
CAACAAAACGAATACAAAGCTAATCTGTTCAAGAAAAGTTTCGAAGAATT
AACAATTTTGAAAGAAGAACTTGAGATAAGAGTAGCAGAGATTAATTTGG
AATTGGTGCAAGAATTATCGTTGAGAGATGAACTACATTCGCACCATCAA
GCTCTACTCATGAACGCTGATGATATTGCCAAATCAGCGCCCTGCCCCAA
TAATAACGACGTCACTCCTACGAACTCTCCTTCCAAAACGGTTTCGGCCA
CGGCAAATTCGAACTCAACAGCTACTGATAACAGAGCTAAAAGAAGATCT
TGGTGGTTCCGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041673XLOC_041673Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066625-proteinTCONS_00066625-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066625-exon-scaffold_456-1491911889:818389..819970TCONS_00066625-exon-scaffold_456-1491911889:818389..819970Clytia hemisphaericaexon
TCONS_00066625-exon-scaffold_456-1510915933:818389..819970TCONS_00066625-exon-scaffold_456-1510915933:818389..819970Clytia hemisphaericaexon
TCONS_00066625-exon-scaffold_456-1575043694:818389..819970TCONS_00066625-exon-scaffold_456-1575043694:818389..819970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:818389..819970 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62789 1.61265 1.02399 1.20218 35.4037 28.2793 36.4765 39.5915 14.4801 19.9857 7.22539 17.622 9.02217 4.14048 3.36002 4.73952 11.8908 10.6369 9.2018 10.5775 7.54492 6.90941 10.7547 10.7203 6.90796 8.04693 23.1011 13.8396 14.6841 15.8374
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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