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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066512 ID=TCONS_00066512|Name=TCONS_00066512|organism=Clytia hemisphaerica|type=transcript|length=982bpRun BLAST on NCBI protein sequence of TCONS_00066512-protein >TCONS_00066512-protein ID=TCONS_00066512-protein|Name=TCONS_00066512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp CLITSSTRGSNTVLKMNKVYLTWFVLLLGLCLTQVEARSIKKIETVGPSNRun BLAST on NCBI transcript from alignment at scaffold_456:429409..440666+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066512 ID=TCONS_00066512|Name=TCONS_00066512|organism=Clytia hemisphaerica|type=transcript|length=11258bp|location=Sequence derived from alignment at scaffold_456:429409..440666+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:429409..440666+ >TCONS_00066512 ID=TCONS_00066512|Name=TCONS_00066512|organism=Clytia hemisphaerica|type=CDS|length=6456bp|location=Sequence derived from alignment at scaffold_456:429409..440666+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066512 vs. Swiss-Prot (Human)
Match: RNT2 (Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 5.487e-21 Identity = 59/194 (30.41%), Postives = 95/194 (48.97%), Query Frame = 3
Query: 150 NNSCWDYFMLVQRWPYSTCQIVNASGSPCLIPERIHSWTLHGLWPDNINTYPTHCGNE-TFDNKKIEGLEEELLMKWPN-LYEEETVDSLWKHEFEKHGTCAQSLESFKEQRSYFTNTLAYFDKWNVADVLAQQGILPRIIPYKASTLVNAIQKGY---DKIVCPGCGHIEGFGQILSQVYMCIDQAD-TLVNC 713
+N W ++VQ WP + C+ + C P WT+HGLWPD C F+ ++I+ L E+ WP+ ++ WKHE+EKHGTCA +++ Q+ YF +L + + ++ VL + GI P I Y+ + +A+ + Y KI C E Q + Q+ +C+ + D L NC
Sbjct: 30 DNHEWKKLIMVQHWPETVCEKIQND---CRDPPDY--WTIHGLWPDKSEG----CNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEV-QTIGQIELCLTKQDQQLQNC 213 The following BLAST results are available for this feature:
BLAST of TCONS_00066512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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