TCONS_00066492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066492
Unique NameTCONS_00066492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2177

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066492 ID=TCONS_00066492|Name=TCONS_00066492|organism=Clytia hemisphaerica|type=transcript|length=2177bp
ATAAAGTAAAGTTTGATTTCAGATGTGATTTTATTATTTACTGGTGTTCT
TAAGTAAAAATTCTACTCAATAGTCGGTCAAGAatatacaatacaataca
aatTATAATGCTCTAAACAGCACAAACATCAAATATCAACAGATTGGGAA
GTTATTGTCACGAAGAAGGATCAAAGAAAAGTTAACCATTCAATCATGTC
AAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAGGCA
AGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACTTAC
GTACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATACAGAGG
GAAGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATACATATA
GAACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAATTGGA
TACAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGGCATGA
TATGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGAGAGTT
TACAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACTGTG
TCTTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCTTATTT
CGAAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTGGAAGA
TCCTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaataaagaa
aaactatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGATGATCC
TTCACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGAGAAGC
AAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAGGACAGT
TTTGCTCTTTAAAAAGCTTTAGGTAGGGGGTATTATAATGATGGTTCAAG
AATGAAAGCTTTCCTTGCATCGTTGTAGATTGATCGGTTTAGGGTTCAAT
GTGTGCTTGGACCGTAAATCCTAACACAGGGGAGGTCTACGCTCTTTTGT
AAGAATATCCTCTGTTAGAGTATCGAGGGAAATTACCTCCAAATGGAGTT
TGTATGAAAAgaggattttgataaaaatataattGATTTTGTAATGAACA
AGATAAGATTATTTGCTTCAAATCTTTAACAGAGAAATCATGCATGAAAT
TTAAATAGCTCTTATATACACCCCCNATTTTGTAATGAACAAGATAAGAT
TATTTGCTTCAAATCTTTAACAGAGAAATCATGCATGAAATTTAAATAGC
TCTTatatacccccccccccccttttcacAGATTTACTggaaacccttcc
cactggaaaattgtccaaaatatcgtccccgattgaaaattatcctccaa
tttttctccactgaaaattttcaaataaacaatATCGTCACTGCAAAATA
TGCTTTTTTCCTCTCAccgctgaattttctgacttgaaaaaaaaagaata
acaatccccatcgagtttcagtccgttatttttatccccgctggctaaaa
aaaattctaccgggtctgtgagaagggggtgttcttATGTTCTGCTCTTA
TGTAGCTCGAGGTTTAAGTTGAAAGGAATAATCAAATGGGTTAGGGCTTT
TAGCCAATAGAAACTTTCTGTGGTTCTGCTTAAAATTTTTGCCTATCTCT
TTTCCAAAGTTTGTAACCTTAAAAAAAGGTTTCTACACCTTATGTTGAAG
TTTTACTGTTTCTTTCCAATGAATGCGAAACTTGTAGCTTGAATATCGTT
GATTACATTTGAAAGCTTTTTCTCCAGGACCACAAACAGAATTAATCTAC
AGTCCAAAGGTCTGCAACATCTAATTGTCTCActatgaattaattttttt
cttacaatttttaTCCAGTtcgataattatttttatactttttttaaaaa
acgaaCGCGAGacattttaattttataaatGCATTTATAGTGAATTATAC
ATAATTTATAGTACCTTTTCTTATCAAATTTTATAGACTGAAACAATATA
gattatattttatttaaagAAGAATTTAGAATAGAGTTTCATAGAACGCA
ATAACATTGTAAAAATCAATTCCCTCATTTAAATTCACTCATCGAGTAAG
TAATATACTCAACGGGAATATAAATAT
Run BLAST on NCBI

protein sequence of TCONS_00066492-protein

>TCONS_00066492-protein ID=TCONS_00066492-protein|Name=TCONS_00066492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MSNEYEFKVIMVGDAGIGKTTMIASLMGDPLPHTYVQTQGTKVSNYVTEY
RGKKVTLKLWDLSGGDTYRTYVAGCFGGAHAAIIGYSMTDSETLLHLRDW
HDMMKNVYDINGPDSFESLQKVVVGFKCESKVVTVSSSQGEDCAKSLNCP
YFEATKVDDKSYKDILWKILDALFARTSVKDRNKEKLYSERKNTPRVVDD
DPSQPLLNKNKAAPPQEKQTPSICGCGSCVIS
Run BLAST on NCBI

transcript from alignment at scaffold_456:291314..297502+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066492 ID=TCONS_00066492|Name=TCONS_00066492|organism=Clytia hemisphaerica|type=transcript|length=6189bp|location=Sequence derived from alignment at scaffold_456:291314..297502+ (Clytia hemisphaerica)
ATAAAGTAAAGTTTGATTTCAGATGTGATTTTATTATTTACTGGTGTTCT
TAAGTAAAAATTCTACTCAATAGTCGGTCAAGAatatacaatacaataca
aatTATAATGCTCTAAACAGCACAAACATCAAATATCAACAGATTGGGAA
GTTATTGTCACGAAGAAGGATCAAAGAAAAGTTAACCATTCAATCATGTC
AAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAGGCA
AGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACTTAC
GTACAAACTCAAGGTATTGAAATACTCTCTGTTTTCCTTCCTTGGACTTA
AAATAATGTAACAATTAAGAATAACAATCTTTCcttatttgattgttttg
actCCCATTATACTGTTCATAGCCCTTATAACGTTATTTCCGCAGGGTTG
TGAATGGTACTAAAAGCACAAAAATAATGCAAGTAAAAGCTAAAATCAGT
GCATTCAGAACAAAACAAGGGACTTTCATTGTTTCAATAAGATCGACATA
TTGAATAAACAAAATGGCATTATTCCACTATCAATTTTAACTTTTACAtg
aattttgttttgcttttgacATAATatatatcattttcatttttagggac
TAAGGTTAGCAACTATGTAACAGAATACAGAGGGAAGAAAGTTACACTAA
AACTATGGTAAGAAAGTCTCCCCTTTTCATTGAGTCTCATCgatcaaaaa
aatcattgtctGTTGAATTACATTTCCAATTAAGTATGAATTTCAAATCT
GCAAGATAGGACATTTTGTGTGACCCTCCTGTTTTTACACTTGTTACCTG
CATGACAATAGTTTCGAATATAAAGTCTCCACATACTATTGAAACAGATT
GTAGAATTCTTCAAACACATTTCGGATAGACCTTAGATAGTAAGattgtt
tacttttcttttccagGGATTTGTCTGGTGGGGATACATATAGAACTTAT
GTAGCCGGTTGCTTTGGTGGTGCTCATGTAAGTCAAATATTTATACTTTC
TCTTATAAATTTTGTATGTAGAAGGGAAGAGAGCTACAGTGCTAATGTAT
AATAATCGTTATATTTTTCCCTAATGTTTCACTCAGGATTAACACATTTC
ATCCAGAAGCTATGTATATTGCAAGCTGGCAGAGAGTATAAACCTTTCTG
TAGACCTTTCTAGGGAGAAGACCCTCTCAAAAAACTACCTGACATCTTTT
GTAAAAGAGTAGATGGCCATCAGCCTATGTAACATAattatttgttttaa
ttttaggCAGCTATAATTGGATACAGTATGACAGACAGTGAAACACTGCT
CCATTTGAGGGATTGGCATGATATGATGAAAAATgtaagtaaataattga
taatgataattgaaatCTTTCCATTGATTAAATGTAAAACAATCTATATT
ATAATCCGAACTCTCACATAAAGCTTTTTCGCTAGCTGTTTTTAGCACAC
GGCAACTCTTTTTTGCGCCTTTTCTATATTTGATCTTTCAATTGGCAATT
TCAACatgtattttcttttcattttttctaatcttcttttttgaacattt
tcaagagcactttgaaattgaacaatcattctctttttctttttcattaa
aatcaaatatccaactttcaaattttcaaagctattcaaagtctttcaaa
atcACTGTCGAATGCCAACCCAGgatggctagccacgatggctGAACTGC
TCGCATAAGAATTTTACATGGTACTCTTGCTTGTGGTAGATTTTAGCAAT
ACAAGATCTTTTTCCTTGTccctaaattaaaaaatatcgcAGTTTNTTAG
CAATACAAGATATTTTTCCTTGTccctaaattaaaaaatatggcAGTTTC
CATTCGATATGCTTTCAAAATAACTCCATTTTTTACCTTTCTTGCAAAAT
CAGCTTGGTGAAAGtagcaaaaaattaatttagacaattttcttgaaaca
tatcaaaatcatcTTATCTaattttttccttggaaaatgcAAGAAATTGT
CTTGGTAGATTTTCCTTAAGAAATACAAGAATCTGCTTTAGGTTGTTtct
attaccaaaaaaaaaagaaatgtgtTTTTCAGGAAATTATTTTAATTAAT
GTTCCATTCGATATACAAGAAAATATTGTAGTTCTTTTTGGaactacctg
gaggtcctataaattaacctgtgttcgtccgttcgtctgctgccaacttt
tctcgggattgaaacATAGGAATTCtgtgatttttggtacaaaggtgcaa
aatggtgattatcaaaatgtgacggagcccgattttcgaaaaaaagaatt
tttgggccaatttgggaccaaaaattgggttttttggactttgtgaaaaa
tctgttcattagtttttcctaatcttttgtACAAAGACGTAAAATTAAAT
TGTGCTAAATATGAAAAAggtcatttttcgaaaaaaaacatttaggcacc
aacttgcaaaattttaaattattcagtTTTTGTTTCTACATGGCTTTCAT
TAAACAGGTAGGTCcgtaaaagtatcgcttgttttccttggaaaatacaa
ggaaTCATTTACATATTTCTCATAAGGAGAAAATACATTTAGTTTCTCAA
TAATTACAGCGAGCGAAACGAGCTTGATTATCATAGTAAAGAGCCGTTTA
AGACGACGCCATGACGGCTAGTAAGTTTAGATTTTGCTTTGAGCTGAGCT
CGAGTGCAGACGCATTAGATTAAAACAAACACTCAAGCCTTTAATTATTT
GAACACAATTATTGGAAGCACAACTTTTGAAACGATGCAAACTTTTTCCT
TTATTCTTAGGTGTATGATATAAATGGACCAGACTCATTTGAGAGTTTAC
AAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACTGTGTCT
TCATCACAGGGAGAAGATGTAAGAGAAAATCACTGAACTTTATAAAAACT
TAGatgatcctatcgtctacaaaAGGTCACTAAGAAGAGAATAATTTAGG
AGGaaggataaatttgaaaatgtagtttaggggtggagtaagcagtggcg
gaggtgtttacagtgtttgCTCCAGACCCTACCGCCACTATTTttccctt
aaccctattcaaactaggcttttaggggcggttcagaactaggggggggc
ttttcctgtaccaccccttaacttttgatctagtgggtctttttggatga
aatttggcacacaaggtccttgtcacgtaaggtaacttttgacaaaaatt
ttttgtgatgacgtcactcatcatgcccaaagtgagcaaaaacaaaaatt
ttccattgttcttataaatagctattgtattctaacaaaggctttagaaa
aaagttgcctgagtttaaaatgcttattttatcctaaatattcaataaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNttgttttttttttgaaaatacctt
aATTGTACCACTACTCAATGTGGGTGTGAATGAACCTAGAACACTAGATC
TAATTTTCTTGAATACTTGTGAAGTAGCGCTGCTAGATGTTTCACAAAGt
tttaacattgcaattttCAAAAGAACTCACGATCAAAGATGGCGTATTAA
TTTAGCCTGACCTCTCTAGTGGAGGAAATGTTATCGCTTGCACCGTTTCA
AGTACTATTTTCTTAGTAGCTTTCACCTCCTTTAGActtctttttgtttt
cgaaTATAGAAGCagaatttctttctttcctttctcTTTCGTATCATCAA
TCAATAAGTTATTTTCGCCGTGATACTCCTCTTGGTTGGAAACAACCAAA
CTGTCTAATTAACATATGTCAAAGATTATGCCACACCATATTTCATTTTC
CACTACTTTTCAAAGTTGcacttttctttctttcagtgTGCCAAGTCACT
TAATTGCCCTTATTTCGAAGCAACAAAAGTCGACGATAAATCATATAAAG
ACGTAAGCCATATGTTCATCTTCCCAATGTCTAGAAATTTTGTTGTTATG
TATTGATGATTCATTTTTTAAGACAATCAATGTTATTACCGAGGCTGGCA
AGTTCTTTCagattttggtaaaattataaCATAAGTTTCTTATTATTTTC
CTTGAAGATTCTTTGGAAGATCCTGGACGCACTTTTTGCTCGTACCTCTG
TTAAAGTAAGTCTATTGTTATCTTTCTTTGTTTGAAATAATTAACATCTT
CCCTCGTTGTGCAGATCTtcagatattgaaaataaatattcgGACATCAT
TTTGAGAATCTAAGGACAACTCGGGTAATTATTTTTAAGGTACAATTTAT
TGGAACACCTGGTAAGCATTGTATTTATTGTGACAGTGAATGATGTAATT
TTGGTTTTCTTCAGAACTTGATATATGTTCATAATTTTGCGTTATAGgat
agaaataaagaaaaactatACTCTGAGCGCAAGAATACACCTCGAGTCGT
TGATGATGATCCTTCACAACCCttactaaataaaaataaagcagCTCCTC
CTCAAGAGAAGCAAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATA
TCCTAGGACAGTTTTGCTCTTTAAAAAGCTTTAGGTAGGGGGTATTATAA
TGATGGTTCAAGAATGAAAGCTTTCCTTGCATCGTTGTAGATTGATCGGT
TTAGGGTTCAATGTGTGCTTGGACCGTAAATCCTAACACAGGGGAGGTCT
ACGCTCTTTTGTAAGAATATCCTCTGTTAGAGTATCGAGGGAAATTACCT
CCAAATGGAGTTTGTATGAAAAgaggattttgataaaaatataattGATT
TTGTAATGAACAAGATAAGATTATTTGCTTCAAATCTTTAACAGAGAAAT
CATGCATGAAATTTAAATAGCTCTTATATACACCCCCNATTTTGTAATGA
ACAAGATAAGATTATTTGCTTCAAATCTTTAACAGAGAAATCATGCATGA
AATTTAAATAGCTCTTatatacccccccccccccttttcacAGATTTACT
ggaaacccttcccactggaaaattgtccaaaatatcgtccccgattgaaa
attatcctccaatttttctccactgaaaattttcaaataaacaatATCGT
CACTGCAAAATATGCTTTTTTCCTCTCAccgctgaattttctgacttgaa
aaaaaaagaataacaatccccatcgagtttcagtccgttatttttatccc
cgctggctaaaaaaaattctaccgggtctgtgagaagggggtgttcttAT
GTTCTGCTCTTATGTAGCTCGAGGTTTAAGTTGAAAGGAATAATCAAATG
GGTTAGGGCTTTTAGCCAATAGAAACTTTCTGTGGTTCTGCTTAAAATTT
TTGCCTATCTCTTTTCCAAAGTTTGTAACCTTAAAAAAAGGTTTCTACAC
CTTATGTTGAAGTTTTACTGTTTCTTTCCAATGAATGCGAAACTTGTAGC
TTGAATATCGTTGATTACATTTGAAAGCTTTTTCTCCAGGACCACAAACA
GAATTAATCTACAGTCCAAAGGTCTGCAACATCTAATTGTCTCActatga
attaatttttttcttacaatttttaTCCAGTtcgataattatttttatac
tttttttaaaaaacgaaCGCGAGacattttaattttataaatGCATTTAT
AGTGAATTATACATAATTTATAGTACCTTTTCTTATCAAATTTTATAGAC
TGAAACAATATAgattatattttatttaaagAAGAATTTAGAATAGAGTT
TCATAGAACGCAATAACATTGTAAAAATCAATTCCCTCATTTAAATTCAC
TCATCGAGTAAGTAATATACTCAACGGGAATATAAATAT

Coding sequence (CDS) from alignment at scaffold_456:291314..297502+

>TCONS_00066492 ID=TCONS_00066492|Name=TCONS_00066492|organism=Clytia hemisphaerica|type=CDS|length=5592bp|location=Sequence derived from alignment at scaffold_456:291314..297502+ (Clytia hemisphaerica)
ATGTCAAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCAT
AGGCAAGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATA
CTTACGTACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATAC
AGAGGGAAGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATAC
ATATAGAACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAA
TTGGATACAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGG
CATGATATGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGA
GAGTTTACAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCA
CTGTGTCTTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCT
TATTTCGAAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTG
GAAGATCCTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaata
aagaaaaactatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGAT
GATCCTTCACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGA
GAAGCAAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAGA
TGTCAAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATA
GGCAAGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATAC
TTACGTACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATACA
GAGGGAAGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATACA
TATAGAACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAAT
TGGATACAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGGC
ATGATATGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGAG
AGTTTACAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCAC
TGTGTCTTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCTT
ATTTCGAAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTGG
AAGATCCTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaataa
agaaaaactatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGATG
ATCCTTCACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGAG
AAGCAAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAGAT
GTCAAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAG
GCAAGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACT
TACGTACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATACAG
AGGGAAGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATACAT
ATAGAACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAATT
GGATACAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGGCA
TGATATGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGAGA
GTTTACAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACT
GTGTCTTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCTTA
TTTCGAAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTGGA
AGATCCTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaataaa
gaaaaactatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGATGA
TCCTTCACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGAGA
AGCAAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAGATG
TCAAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAGG
CAAGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACTT
ACGTACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATACAGA
GGGAAGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATACATA
TAGAACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAATTG
GATACAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGGCAT
GATATGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGAGAG
TTTACAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACTG
TGTCTTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCTTAT
TTCGAAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTGGAA
GATCCTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaataaag
aaaaactatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGATGAT
CCTTCACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGAGAA
GCAAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAGATGT
CAAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAGGC
AAGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACTTA
CGTACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATACAGAG
GGAAGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATACATAT
AGAACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAATTGG
ATACAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGGCATG
ATATGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGAGAGT
TTACAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACTGT
GTCTTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCTTATT
TCGAAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTGGAAG
ATCCTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaataaaga
aaaactatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGATGATC
CTTCACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGAGAAG
CAAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAGATGTC
AAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAGGCA
AGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACTTAC
GTACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATACAGAGG
GAAGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATACATATA
GAACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAATTGGA
TACAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGGCATGA
TATGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGAGAGTT
TACAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACTGTG
TCTTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCTTATTT
CGAAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTGGAAGA
TCCTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaataaagaa
aaactatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGATGATCC
TTCACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGAGAAGC
AAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAGATGTCA
AACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAGGCAA
GACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACTTACG
TACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATACAGAGGG
AAGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATACATATAG
AACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAATTGGAT
ACAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGGCATGAT
ATGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGAGAGTTT
ACAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACTGTGT
CTTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCTTATTTC
GAAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTGGAAGAT
CCTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaataaagaaa
aactatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGATGATCCT
TCACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGAGAAGCA
AACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAGATGTCAA
ACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAGGCAAG
ACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACTTACGT
ACAAACTCAAGggacTAAGGTTAGCAACTATGTAACAGAATACAGAGGGA
AGAAAGTTACACTAAAACTATGGGATTTGTCTGGTGGGGATACATATAGA
ACTTATGTAGCCGGTTGCTTTGGTGGTGCTCATgCAGCTATAATTGGATA
CAGTATGACAGACAGTGAAACACTGCTCCATTTGAGGGATTGGCATGATA
TGATGAAAAATGTGTATGATATAAATGGACCAGACTCATTTGAGAGTTTA
CAAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACTGTGTC
TTCATCACAGGGAGAAGATtgTGCCAAGTCACTTAATTGCCCTTATTTCG
AAGCAACAAAAGTCGACGATAAATCATATAAAGACATTCTTTGGAAGATC
CTGGACGCACTTTTTGCTCGTACCTCTGTTAAAgatagaaataaagaaaa
actatACTCTGAGCGCAAGAATACACCTCGAGTCGTTGATGATGATCCTT
CACAACCCttactaaataaaaataaagcagCTCCTCCTCAAGAGAAGCAA
ACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATATCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041605XLOC_041605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066492-exon-scaffold_456-1491911889:291314..291626TCONS_00066492-exon-scaffold_456-1491911889:291314..291626Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1510915933:291314..291626TCONS_00066492-exon-scaffold_456-1510915933:291314..291626Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1575043694:291314..291626TCONS_00066492-exon-scaffold_456-1575043694:291314..291626Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1491911889:291960..292020TCONS_00066492-exon-scaffold_456-1491911889:291960..292020Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1510915933:291960..292020TCONS_00066492-exon-scaffold_456-1510915933:291960..292020Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1575043694:291960..292020TCONS_00066492-exon-scaffold_456-1575043694:291960..292020Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1491911889:292280..292340TCONS_00066492-exon-scaffold_456-1491911889:292280..292340Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1510915933:292280..292340TCONS_00066492-exon-scaffold_456-1510915933:292280..292340Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1575043694:292280..292340TCONS_00066492-exon-scaffold_456-1575043694:292280..292340Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1491911889:292620..292697TCONS_00066492-exon-scaffold_456-1491911889:292620..292697Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1510915933:292620..292697TCONS_00066492-exon-scaffold_456-1510915933:292620..292697Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1575043694:292620..292697TCONS_00066492-exon-scaffold_456-1575043694:292620..292697Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1491911889:294174..294281TCONS_00066492-exon-scaffold_456-1491911889:294174..294281Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1510915933:294174..294281TCONS_00066492-exon-scaffold_456-1510915933:294174..294281Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1575043694:294174..294281TCONS_00066492-exon-scaffold_456-1575043694:294174..294281Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1491911889:295550..295615TCONS_00066492-exon-scaffold_456-1491911889:295550..295615Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1510915933:295550..295615TCONS_00066492-exon-scaffold_456-1510915933:295550..295615Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1575043694:295550..295615TCONS_00066492-exon-scaffold_456-1575043694:295550..295615Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1491911889:295771..295818TCONS_00066492-exon-scaffold_456-1491911889:295771..295818Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1510915933:295771..295818TCONS_00066492-exon-scaffold_456-1510915933:295771..295818Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1575043694:295771..295818TCONS_00066492-exon-scaffold_456-1575043694:295771..295818Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1491911889:296061..297502TCONS_00066492-exon-scaffold_456-1491911889:296061..297502Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1510915933:296061..297502TCONS_00066492-exon-scaffold_456-1510915933:296061..297502Clytia hemisphaericaexon
TCONS_00066492-exon-scaffold_456-1575043694:296061..297502TCONS_00066492-exon-scaffold_456-1575043694:296061..297502Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066492-proteinTCONS_00066492-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:291314..297502 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.90306	3.63895	1.08321	0.958532	11.9064	8.9287	14.0537	13.6397	11.6555	14.2763	14.0908	6.24793	9.85871	7.93615	19.2651	21.3439	12.6616	12.1371	9.29724	11.5715	7.02509	7.46096	18.8715	19.224	9.66584	11.0986	24.4965	24.1912	37.3885	28.8833
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00066492 vs. Swiss-Prot (Human)
Match: RAB3B (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.401e-18
Identity = 57/210 (27.14%), Postives = 104/210 (49.52%), Query Frame = 1 
Query:  205 EYEFKVIMVGDAGIGKTTMIASLMGDPLPHTYVQTQGTKVSNYVTEYRGKKVTLKLWDLSGGDTYRTYVAGCFGGAHAAIIGYSMTDSETLLHLRDWHDMMKNVYDINGPDSFESLQKVVVGFKC---ESKVVTVSSSQGEDCAKSLNCPYFEATKVDDKSYKDILWKILDALFARTSVKDRNKEKLYSERKNTPRVVDDDPSQPLLNKN 825
            +Y FK++++G++ +GKT+ +     D     +V T G            K+V L++WD +G + YRT     + GA   I+ Y +T+ E+   ++DW   +K         S+++ Q ++VG KC   E +V  V + +G+  A+ L   +FEA+  ++ S +    +++DA+  + S        +    KNT   + D P  PLL +N
Sbjct:   20 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-------SWDNAQVILVGNKCDMEEERV--VPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSMLGSSKNTR--LSDTP--PLLQQN 216
The following BLAST results are available for this feature:
BLAST of TCONS_00066492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB3B1.401e-1827.14Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
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