TCONS_00066492-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066492-protein
Unique NameTCONS_00066492-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066492-protein ID=TCONS_00066492-protein|Name=TCONS_00066492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MSNEYEFKVIMVGDAGIGKTTMIASLMGDPLPHTYVQTQGTKVSNYVTEY
RGKKVTLKLWDLSGGDTYRTYVAGCFGGAHAAIIGYSMTDSETLLHLRDW
HDMMKNVYDINGPDSFESLQKVVVGFKCESKVVTVSSSQGEDCAKSLNCP
YFEATKVDDKSYKDILWKILDALFARTSVKDRNKEKLYSERKNTPRVVDD
DPSQPLLNKNKAAPPQEKQTPSICGCGSCVIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041605XLOC_041605Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066492TCONS_00066492Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 151..173
score: 12.3
coord: 7..28
score: 33.14
coord: 48..70
score: 29.02
coord: 117..130
score: 27.04
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 7..172
e-value: 1.3E-9
score: 10.4
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 9..168
e-value: 0.0059
score: -78.9
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 4..171
e-value: 1.5E-4
score: -41.8
NoneNo IPR availableGENE3D3.30.70.1390coord: 5..70
e-value: 4.2E-15
score: 55.0
NoneNo IPR availableGENE3D3.40.50.300coord: 71..174
e-value: 2.6E-11
score: 42.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..222
NoneNo IPR availablePROSITEPS51419RABcoord: 2..224
score: 14.23
NoneNo IPR availableCDDcd00154Rabcoord: 7..153
e-value: 2.92886E-26
score: 99.4526
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 8..172
e-value: 1.6E-25
score: 89.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..175

Blast
[Close]
BLAST of TCONS_00066492-protein vs. Swiss-Prot (Human)
Match: RAB3B (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.789e-21
Identity = 57/210 (27.14%), Postives = 104/210 (49.52%), Query Frame = 0 
Query:    4 EYEFKVIMVGDAGIGKTTMIASLMGDPLPHTYVQTQGTKVSNYVTEYRGKKVTLKLWDLSGGDTYRTYVAGCFGGAHAAIIGYSMTDSETLLHLRDWHDMMKNVYDINGPDSFESLQKVVVGFKC---ESKVVTVSSSQGEDCAKSLNCPYFEATKVDDKSYKDILWKILDALFARTSVKDRNKEKLYSERKNTPRVVDDDPSQPLLNKN 210
            +Y FK++++G++ +GKT+ +     D     +V T G            K+V L++WD +G + YRT     + GA   I+ Y +T+ E+   ++DW   +K         S+++ Q ++VG KC   E +V  V + +G+  A+ L   +FEA+  ++ S +    +++DA+  + S        +    KNT   + D P  PLL +N
Sbjct:   20 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-------SWDNAQVILVGNKCDMEEERV--VPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSMLGSSKNTR--LSDTP--PLLQQN 216
The following BLAST results are available for this feature:
BLAST of TCONS_00066492-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB3B8.789e-2127.14Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
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