XLOC_041605 (gene) - C. hemisphaerica

Overview
NameXLOC_041605
Unique NameXLOC_041605
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_456:291314..297502+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041605 ID=XLOC_041605|Name=XLOC_041605|organism=Clytia hemisphaerica|type=gene|length=6189bp|location=Sequence derived from alignment at scaffold_456:291314..297502+ (Clytia hemisphaerica)
ATAAAGTAAAGTTTGATTTCAGATGTGATTTTATTATTTACTGGTGTTCT
TAAGTAAAAATTCTACTCAATAGTCGGTCAAGAatatacaatacaataca
aatTATAATGCTCTAAACAGCACAAACATCAAATATCAACAGATTGGGAA
GTTATTGTCACGAAGAAGGATCAAAGAAAAGTTAACCATTCAATCATGTC
AAACGAATATGAATTCAAAGTGATTATGGTTGGGGATGCAGGCATAGGCA
AGACAACCATGATAGCAAGCTTGATGGGTGATCCTCTCCCTCATACTTAC
GTACAAACTCAAGGTATTGAAATACTCTCTGTTTTCCTTCCTTGGACTTA
AAATAATGTAACAATTAAGAATAACAATCTTTCcttatttgattgttttg
actCCCATTATACTGTTCATAGCCCTTATAACGTTATTTCCGCAGGGTTG
TGAATGGTACTAAAAGCACAAAAATAATGCAAGTAAAAGCTAAAATCAGT
GCATTCAGAACAAAACAAGGGACTTTCATTGTTTCAATAAGATCGACATA
TTGAATAAACAAAATGGCATTATTCCACTATCAATTTTAACTTTTACAtg
aattttgttttgcttttgacATAATatatatcattttcatttttagggac
TAAGGTTAGCAACTATGTAACAGAATACAGAGGGAAGAAAGTTACACTAA
AACTATGGTAAGAAAGTCTCCCCTTTTCATTGAGTCTCATCgatcaaaaa
aatcattgtctGTTGAATTACATTTCCAATTAAGTATGAATTTCAAATCT
GCAAGATAGGACATTTTGTGTGACCCTCCTGTTTTTACACTTGTTACCTG
CATGACAATAGTTTCGAATATAAAGTCTCCACATACTATTGAAACAGATT
GTAGAATTCTTCAAACACATTTCGGATAGACCTTAGATAGTAAGattgtt
tacttttcttttccagGGATTTGTCTGGTGGGGATACATATAGAACTTAT
GTAGCCGGTTGCTTTGGTGGTGCTCATGTAAGTCAAATATTTATACTTTC
TCTTATAAATTTTGTATGTAGAAGGGAAGAGAGCTACAGTGCTAATGTAT
AATAATCGTTATATTTTTCCCTAATGTTTCACTCAGGATTAACACATTTC
ATCCAGAAGCTATGTATATTGCAAGCTGGCAGAGAGTATAAACCTTTCTG
TAGACCTTTCTAGGGAGAAGACCCTCTCAAAAAACTACCTGACATCTTTT
GTAAAAGAGTAGATGGCCATCAGCCTATGTAACATAattatttgttttaa
ttttaggCAGCTATAATTGGATACAGTATGACAGACAGTGAAACACTGCT
CCATTTGAGGGATTGGCATGATATGATGAAAAATgtaagtaaataattga
taatgataattgaaatCTTTCCATTGATTAAATGTAAAACAATCTATATT
ATAATCCGAACTCTCACATAAAGCTTTTTCGCTAGCTGTTTTTAGCACAC
GGCAACTCTTTTTTGCGCCTTTTCTATATTTGATCTTTCAATTGGCAATT
TCAACatgtattttcttttcattttttctaatcttcttttttgaacattt
tcaagagcactttgaaattgaacaatcattctctttttctttttcattaa
aatcaaatatccaactttcaaattttcaaagctattcaaagtctttcaaa
atcACTGTCGAATGCCAACCCAGgatggctagccacgatggctGAACTGC
TCGCATAAGAATTTTACATGGTACTCTTGCTTGTGGTAGATTTTAGCAAT
ACAAGATCTTTTTCCTTGTccctaaattaaaaaatatcgcAGTTTNTTAG
CAATACAAGATATTTTTCCTTGTccctaaattaaaaaatatggcAGTTTC
CATTCGATATGCTTTCAAAATAACTCCATTTTTTACCTTTCTTGCAAAAT
CAGCTTGGTGAAAGtagcaaaaaattaatttagacaattttcttgaaaca
tatcaaaatcatcTTATCTaattttttccttggaaaatgcAAGAAATTGT
CTTGGTAGATTTTCCTTAAGAAATACAAGAATCTGCTTTAGGTTGTTtct
attaccaaaaaaaaaagaaatgtgtTTTTCAGGAAATTATTTTAATTAAT
GTTCCATTCGATATACAAGAAAATATTGTAGTTCTTTTTGGaactacctg
gaggtcctataaattaacctgtgttcgtccgttcgtctgctgccaacttt
tctcgggattgaaacATAGGAATTCtgtgatttttggtacaaaggtgcaa
aatggtgattatcaaaatgtgacggagcccgattttcgaaaaaaagaatt
tttgggccaatttgggaccaaaaattgggttttttggactttgtgaaaaa
tctgttcattagtttttcctaatcttttgtACAAAGACGTAAAATTAAAT
TGTGCTAAATATGAAAAAggtcatttttcgaaaaaaaacatttaggcacc
aacttgcaaaattttaaattattcagtTTTTGTTTCTACATGGCTTTCAT
TAAACAGGTAGGTCcgtaaaagtatcgcttgttttccttggaaaatacaa
ggaaTCATTTACATATTTCTCATAAGGAGAAAATACATTTAGTTTCTCAA
TAATTACAGCGAGCGAAACGAGCTTGATTATCATAGTAAAGAGCCGTTTA
AGACGACGCCATGACGGCTAGTAAGTTTAGATTTTGCTTTGAGCTGAGCT
CGAGTGCAGACGCATTAGATTAAAACAAACACTCAAGCCTTTAATTATTT
GAACACAATTATTGGAAGCACAACTTTTGAAACGATGCAAACTTTTTCCT
TTATTCTTAGGTGTATGATATAAATGGACCAGACTCATTTGAGAGTTTAC
AAAAAGTTGTTGTTGGTTTCAAATGTGAAAGTAAAGTTGTCACTGTGTCT
TCATCACAGGGAGAAGATGTAAGAGAAAATCACTGAACTTTATAAAAACT
TAGatgatcctatcgtctacaaaAGGTCACTAAGAAGAGAATAATTTAGG
AGGaaggataaatttgaaaatgtagtttaggggtggagtaagcagtggcg
gaggtgtttacagtgtttgCTCCAGACCCTACCGCCACTATTTttccctt
aaccctattcaaactaggcttttaggggcggttcagaactaggggggggc
ttttcctgtaccaccccttaacttttgatctagtgggtctttttggatga
aatttggcacacaaggtccttgtcacgtaaggtaacttttgacaaaaatt
ttttgtgatgacgtcactcatcatgcccaaagtgagcaaaaacaaaaatt
ttccattgttcttataaatagctattgtattctaacaaaggctttagaaa
aaagttgcctgagtttaaaatgcttattttatcctaaatattcaataaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNttgttttttttttgaaaatacctt
aATTGTACCACTACTCAATGTGGGTGTGAATGAACCTAGAACACTAGATC
TAATTTTCTTGAATACTTGTGAAGTAGCGCTGCTAGATGTTTCACAAAGt
tttaacattgcaattttCAAAAGAACTCACGATCAAAGATGGCGTATTAA
TTTAGCCTGACCTCTCTAGTGGAGGAAATGTTATCGCTTGCACCGTTTCA
AGTACTATTTTCTTAGTAGCTTTCACCTCCTTTAGActtctttttgtttt
cgaaTATAGAAGCagaatttctttctttcctttctcTTTCGTATCATCAA
TCAATAAGTTATTTTCGCCGTGATACTCCTCTTGGTTGGAAACAACCAAA
CTGTCTAATTAACATATGTCAAAGATTATGCCACACCATATTTCATTTTC
CACTACTTTTCAAAGTTGcacttttctttctttcagtgTGCCAAGTCACT
TAATTGCCCTTATTTCGAAGCAACAAAAGTCGACGATAAATCATATAAAG
ACGTAAGCCATATGTTCATCTTCCCAATGTCTAGAAATTTTGTTGTTATG
TATTGATGATTCATTTTTTAAGACAATCAATGTTATTACCGAGGCTGGCA
AGTTCTTTCagattttggtaaaattataaCATAAGTTTCTTATTATTTTC
CTTGAAGATTCTTTGGAAGATCCTGGACGCACTTTTTGCTCGTACCTCTG
TTAAAGTAAGTCTATTGTTATCTTTCTTTGTTTGAAATAATTAACATCTT
CCCTCGTTGTGCAGATCTtcagatattgaaaataaatattcgGACATCAT
TTTGAGAATCTAAGGACAACTCGGGTAATTATTTTTAAGGTACAATTTAT
TGGAACACCTGGTAAGCATTGTATTTATTGTGACAGTGAATGATGTAATT
TTGGTTTTCTTCAGAACTTGATATATGTTCATAATTTTGCGTTATAGgat
agaaataaagaaaaactatACTCTGAGCGCAAGAATACACCTCGAGTCGT
TGATGATGATCCTTCACAACCCttactaaataaaaataaagcagCTCCTC
CTCAAGAGAAGCAAACACCAAGTATTTGTGGCTGTGGATCTTGTGTTATA
TCCTAGGACAGTTTTGCTCTTTAAAAAGCTTTAGGTAGGGGGTATTATAA
TGATGGTTCAAGAATGAAAGCTTTCCTTGCATCGTTGTAGATTGATCGGT
TTAGGGTTCAATGTGTGCTTGGACCGTAAATCCTAACACAGGGGAGGTCT
ACGCTCTTTTGTAAGAATATCCTCTGTTAGAGTATCGAGGGAAATTACCT
CCAAATGGAGTTTGTATGAAAAgaggattttgataaaaatataattGATT
TTGTAATGAACAAGATAAGATTATTTGCTTCAAATCTTTAACAGAGAAAT
CATGCATGAAATTTAAATAGCTCTTATATACACCCCCNATTTTGTAATGA
ACAAGATAAGATTATTTGCTTCAAATCTTTAACAGAGAAATCATGCATGA
AATTTAAATAGCTCTTatatacccccccccccccttttcacAGATTTACT
ggaaacccttcccactggaaaattgtccaaaatatcgtccccgattgaaa
attatcctccaatttttctccactgaaaattttcaaataaacaatATCGT
CACTGCAAAATATGCTTTTTTCCTCTCAccgctgaattttctgacttgaa
aaaaaaagaataacaatccccatcgagtttcagtccgttatttttatccc
cgctggctaaaaaaaattctaccgggtctgtgagaagggggtgttcttAT
GTTCTGCTCTTATGTAGCTCGAGGTTTAAGTTGAAAGGAATAATCAAATG
GGTTAGGGCTTTTAGCCAATAGAAACTTTCTGTGGTTCTGCTTAAAATTT
TTGCCTATCTCTTTTCCAAAGTTTGTAACCTTAAAAAAAGGTTTCTACAC
CTTATGTTGAAGTTTTACTGTTTCTTTCCAATGAATGCGAAACTTGTAGC
TTGAATATCGTTGATTACATTTGAAAGCTTTTTCTCCAGGACCACAAACA
GAATTAATCTACAGTCCAAAGGTCTGCAACATCTAATTGTCTCActatga
attaatttttttcttacaatttttaTCCAGTtcgataattatttttatac
tttttttaaaaaacgaaCGCGAGacattttaattttataaatGCATTTAT
AGTGAATTATACATAATTTATAGTACCTTTTCTTATCAAATTTTATAGAC
TGAAACAATATAgattatattttatttaaagAAGAATTTAGAATAGAGTT
TCATAGAACGCAATAACATTGTAAAAATCAATTCCCTCATTTAAATTCAC
TCATCGAGTAAGTAATATACTCAACGGGAATATAAATAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066492TCONS_00066492Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00066492-proteinTCONS_00066492-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:291314..297502 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.9	3.64	1.08	0.96	11.91	8.93	14.05	13.64	11.66	14.28	14.09	6.25	9.86	7.94	19.27	21.34	12.66	12.14	9.3	11.57	7.03	7.46	18.87	19.22	9.67	11.1	24.5	24.19	37.39	28.88