TCONS_00066467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066467
Unique NameTCONS_00066467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066467 ID=TCONS_00066467|Name=TCONS_00066467|organism=Clytia hemisphaerica|type=transcript|length=1719bp
ttTACAGGGATGACATCTGAGGAGTCTGCAGCATTGACATCAGCCATGAA
GAAATCAGGAGATGTTTTGGACTGGCCAGCTGAATGGAAAGATCAAGTAG
TTGATAAACACTCAACAGGTGGAGTGGGTGATAAAATCAGTTTGATTCTA
GCTCCTGCTGTAGCCTCTTGTGGACTAAAGCTACCAATGATATCTGGTCG
ATCTTTGGGATTCACTGGAGGAACATTGGACAAATTAGAATCCATCCCAG
GATTCAATATCAAATTCTCACCAGAAGACATCACCAAGGCTTTGGAGACT
GCTGGTTGTTGCATCGTTGGGCAGACGGCAACATTGGTACCTGCAGACAA
GATTTTATATTCCATTCGTGATATCACATCAACTGTTGGCTCATTCCCTT
TGATCGCAAGTTCCATCGTCTCCAAGAAAGCTGCTGagGGTATCTCAGCG
TTGGTGTTGGACGTTAAATACGGAAGTGGAAGCtaccaaaaaaccctatt
tcaAGCTGAAGAATTAGCTTCTCTTATGGTAGACATTAGTTGCCAACTTG
GTATCAAAACATCTGCTGTTATCACTCACATGGATCATCCTATTGGAAAG
ATGGTAGGCAATGCTGTGGAAGTCATTGAATCTATTGAATGTTTACAAGG
GAAAGGACCGAATGATCTGATGGAATTGGTCACCACTCAAGGTGGAGTTC
TCTTATATCTGAAAGGAATTTGCGAGAGCCCTGAAAAAGGAAAGGAGGAG
ATAGAACGACGAATTAAGAATGGAGACGcgttaaaaaaATTTGAAGAGAT
GGCCATCATACAAGGTGTTGAAAAAACTGTCGCTGAGAATCTCTGTAAAA
ATCCTTATTCCGTTCTCTCGTTATCATCAAACAATACTATTCTACATGCA
TCATCTTCAGGTTTCATTTCTGATATGAAGGCTATTTCGTTTGGAGAAGT
ATCTTCAAGATTAGGTAATGGACGTCAAGTTCCaaccgatgacgtcactt
aCGATACCGGAATACAGATTCTCCGACACGTCGGTGACGAAGTTAAGTCA
GGCGACCCCATACTGAAAGTATACCATAAAGAAAAGACACTAGATGCAGG
TTTCAAGAGTAAACTTGAACAAGCTGTCACTGTTTCATCTACCAAACCAA
AGCCTAGAAATCGTGTCGAGAAGGTTATTCATCGTTCTTCTTCGTCAAGT
CGTATTTTTATGGTGTCACAATAGAGAGTAATTACATTgtgtttttgatg
tgaaaaaaCCTTAACGTCAAATCAAATTCCATTGAAACAACTCTGTTTTA
TCGATCCGAAACCTTGTTCTTAAAACTGAATCGGACCATTGGGAATAGAG
AAGGTTTTTTGTAAGGATGTTAGAGTCAAGATAAAAAAATgtgatttgaa
atatttttaatatttttaatatttttgtatttttgatttttttttgtatt
tttgaatagGGGACCCAAAAAGACTGGAAACTAGAGCAAATGGTTTTCTT
CGTTCTGAGATCACAGCTTGTTATTTCAAAGAATAATATTAAGACGTCAA
ACTCATTGTAAGTTTTTGAGATTGCAAACGGTGGTTCTAGTCACGTGACC
TCGGTTAGAAAATTCAACCAAGAAGCGACTCTATATCAAGATGGGATTAT
ATTATTATTGCTCAACGAAAGGTTAATCTAGGAGCGATGAAGTACATTTT
CAATATACACAGCTTTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_455:575984..579434-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066467 ID=TCONS_00066467|Name=TCONS_00066467|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at scaffold_455:575984..579434- (Clytia hemisphaerica)
TTTACAGGGATGACATCTGAGGAGTCTGCAGCATTGACATCAGCCATGAA
GAAATCAGGAGATGTTTTGGACTGGCCAGCTGAATGGAAAGATCAAGTAG
TTGATAAACACTCAACAGGTGGAGTGGGTGATAAAATCAGTTTGATTCTA
GCTCCTGCTGTAGCCTCTTGTGGACTAAAGGTATGGAAAACGATCTTGAT
TTATATGTTGAATTGAAATTACTCCTTTCACTATTACGGAAATGAAGATT
GACTTCAACCGCTTTGGACTTTATTGCAGGACACAAAAAAAGATACAAAA
TCAAAATTCTCAAATCCAGAATCGTTGAAGAAGATTCGACCTAATTTTTA
CATGCCTCATTTAATAGATATACTTCCTCAACATTACACAGTACACTTTT
TATGTTTTGTATAATGAATTTAGTGTGATAATGTTATCGAGGTGATTAAA
CGAATATTAAAGTGTACTTGCCAATGCTACGCAGCGATACAACTGAGTGG
TGTTAAGCACCAAAGCCACACCAACCACCCAACTACGTTAAACATCAGTT
AACCTTATCAAATAGAAAAAGAAACTGGAAAAAAAATACCTAAGAAAATT
TATCATTTATTTAGCTACCAATGATATCTGGTCGATCTTTGGGATTCACT
GGAGGAACATTGGACAAATTAGAATCCATCCCAGGATTCAATATCAAATT
CTCACCAGAAGACATCACCAAGGCTTTGGAGACTGCTGGTTGTTGCATCG
TTGGGCAGACGGCAACATTGGTACCTGCAGACAAGATTTTATATTCCATT
CGTGATATCACATCAACTGTTGGCTCATTCCCTTTGATCGCAAGTTCCAT
CGTCTCCAAGAAAGCTGCTGGTATAACAAAAATATACGTTTACTCTCTTT
GAATTTGAAGCGATAACATCTTTACACCCATAAGTTAAGTGAATTTAAAG
TACATAGAAATGGGATGAGAGGAACAAGGATGTCAGTCTTAAGGCTTCGC
CCTTGATCCCAGGACTAACATAATCGACGTTATATCAGGATGTTACTTGA
CGAGTTTTGTAGTCAGCTATCATAATTTATAGCTAGCAGACCAGAAGAGG
CGGTAGTGTGACAGTGATTATCATAAACGAATTCAAGGAAGAATTAGACT
TCTGTGCTCTTTATCTTTAAAAAGCAACTTTAGCAATGGAAAAAATGGCC
TTTTCCCACATGCCATCAACGAACTTAATATAGAAATCAAATGCAAAATG
TGGATTATTGACTGAAAAATCATACACCAGTGTCTGATCTGAGGGGAATT
CAAGATTTATGAAGGAGAGTGTCTCTTTTATCCATACTCCTTATAAGGAA
ATGAATACTCTCCTCCAAAGAATAAATTTTGAACCCCCTCAGATCCACCA
GCTTCATATGTTAAATTGTCTTTTTTTAACTTTTAGAGGGTATCTCAGCG
TTGGTGTTGGACGTTAAATACGGAAGTGGAAGCTACCAAAAAACCCTATT
TCAAGCTGAAGAATTAGCTTCTCTTATGGTAGACATTAGTTGCCAACTTG
GTATCAAAACATCTGCTGTTATCACTCACATGGATCATCCTATTGGAAAG
ATGGTAGGCAATGCTGTGGAAGTCATTGAATCTATTGAATGTTTACAAGG
GAAAGGACCGAATGATCTGATGGAATTGGTCACCACTCAAGGTATTAATA
TAACTGAATATCTATATTAGCCCCTCCCCCCAGCGGTTACCCAGAATNAC
CGAATGATCTGATGGAATTGGTCACCACTCAAGGTATTAATATAACTGAA
TATCTATATTAGCCCCTCCCCCCAGCGGTTACCCAGAATACGCGAATGGG
CTATTTCAGTTACGTGAATGCGTGAAAATTGAAAAACTTTGCTTGAACGG
AAATTGCGTAAATTGCAGAAAAAACATTGCGTGAATGCGTGAATTTGGAG
AAAAAAAATTGCGTGATTGCGTAAATTGAAGGACGTCTGGGTGGCCCCTA
TATCCCCCTATATCAAATGCTTAGCAAGATTTTTGAACTTGCAATTACAA
TATCAACAAATTGCTCACTTCTAAGTTAAAGTTTGAAAGGAAATCGCCAC
AAACCGAATTCAATTCATGTTTGTCATGTTTTGGCCACGCTGTCAGAAAT
ATTTGTGGTATGTGTGTTATAAGGCTATTGGGTATCATGTAGCAAATTNT
TTGGCCACGCTGTCATAAATATTTGTGGTATGTGTGTTATAAGGCTATTG
GGTATCATGTAGCAAATTTATAGAGCTACTTCTATAGAGAACAAAGGCTT
TTTTAATTGAAACAACAATGGTGCAGTGATTTGTTTTCTGTTCGTTTCCA
GGTGGAGTTCTCTTATATCTGAAAGGAATTTGCGAGAGCCCTGAAAAAGG
AAAGGAGGAGATAGAACGACGAATTAAGAATGGAGACGCGTTAAAAAAAT
TTGAAGAGATGGCCATCGTACAAGGTGTTGATAAAACTGTTGCTGAGAAT
CTCTGTAAAGNGTTAAAAACATTTGAAGAGATGGCCATCATACAAGGTGT
TGAAAAAACTGTCGCTGAGAATCTCTGTAAAAATCCTTATTCCGTTCTCT
CGTTATCATCAAACAATACTATTCTACATGCATCATCTTCAGGTTTCATT
TCTGATATGAAGGCTATTTCGTTTGGAGAAGTATCTTCAAGATTAGGTAA
TGGACGTCAAGTTCCAACCGATGACGTCACTTACGATACCGGAATACAGA
TTCTCCGACACGTCGGTGACGAAGTTAAGTCAGGCGACCCCATACTGAAA
GTATACCATAAAGAAAAGACACTAGATGCAGGTTTCAAGAGTAAACTTGA
ACAAGCTGTCACTGTTTCATCTACCAAACCAAAGCCTAGAAATCGTGTCG
AGAAGGTTATTCATCGTTCTTCTTCGTCAAGTCGTATTTTTATGGTGTCA
CAATAGAGAGTAATTACATTGTGTTTTTGATGTGAAAAAACCTTAACGTC
AAATCAAATTCCATTGAAACAACTCTGTTTTATCGATCCGAAACCTTGTT
CTTAAAACTGAATCGGACCATTGGGAATAGAGAAGGTTTTTTGTAAGGAT
GTTAGAGTCAAGATAAAAAAATGTGATTTGAAATATTTTTAATATTTTTA
ATATTTTTGTATTTTTGATTTTTTTTTGTATTTTTGAATAGGGGACCCAA
AAAGACTGGAAACTAGAGCAAATGGTTTTCTTCGTTCTGAGATCACAGCT
TGTTATTTCAAAGAATAATATTAAGACGTCAAACTCATTGTAAGTTTTTG
AGATTGCAAACGGTGGTTCTAGTCACGTGACCTCGGTTAGAAAATTCAAC
CAAGAAGCGACTCTATATCAAGATGGGATTATATTATTATTGCTCAACGA
AAGGTTAATCTAGGAGCGATGAAGTACATTTTCAATATACACAGCTTTAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041580XLOC_041580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066467-exon-scaffold_455-1575043694:579255..579434TCONS_00066467-exon-scaffold_455-1575043694:579255..579434Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1575043694:578565..578820TCONS_00066467-exon-scaffold_455-1575043694:578565..578820Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1575043694:577744..577998TCONS_00066467-exon-scaffold_455-1575043694:577744..577998Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1575043694:576987..577083TCONS_00066467-exon-scaffold_455-1575043694:576987..577083Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1575043694:575984..576914TCONS_00066467-exon-scaffold_455-1575043694:575984..576914Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1510915933:579255..579434TCONS_00066467-exon-scaffold_455-1510915933:579255..579434Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1510915933:578565..578820TCONS_00066467-exon-scaffold_455-1510915933:578565..578820Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1510915933:577744..577998TCONS_00066467-exon-scaffold_455-1510915933:577744..577998Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1510915933:576987..577083TCONS_00066467-exon-scaffold_455-1510915933:576987..577083Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1510915933:575984..576914TCONS_00066467-exon-scaffold_455-1510915933:575984..576914Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1491911889:579255..579434TCONS_00066467-exon-scaffold_455-1491911889:579255..579434Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1491911889:578565..578820TCONS_00066467-exon-scaffold_455-1491911889:578565..578820Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1491911889:577744..577998TCONS_00066467-exon-scaffold_455-1491911889:577744..577998Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1491911889:576987..577083TCONS_00066467-exon-scaffold_455-1491911889:576987..577083Clytia hemisphaericaexon
TCONS_00066467-exon-scaffold_455-1491911889:575984..576914TCONS_00066467-exon-scaffold_455-1491911889:575984..576914Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:575984..579434 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.793865	6.1672	5.73283	6.38997	29.7433	31.3892	33.0059	29.1468	13.0787	10.7546	10.3546	5.98693	12.4514	5.48636	6.90644e-09	0	0	0	0	0	0	1.0004e-07	5.08063e-08	0	0.83245	0.900535	0	1.16646e-05	0.000118755	1.50599e-09
Blast
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BLAST of TCONS_00066467 vs. Swiss-Prot (Human)
Match: TYPH (Thymidine phosphorylase OS=Homo sapiens GN=TYMP PE=1 SV=2)

HSP 1 Score: 338.961 bits (868), Expect = 4.751e-109
Identity = 175/387 (45.22%), Postives = 242/387 (62.53%), Query Frame = 1 
Query:    1 FTGMTSEESAALTSAMKKSGDVLDWPAEWKDQVVDKHSTGGVGDKISLILAPAVASCGLKLPMISGRSLGFTGGTLDKLESIPGFNIKFSPEDITKALETAGCCIVGQTATLVPADKILYSIRDITSTVGSFPLIASSIVSKKAAEGISALVLDVKYGSGSYQKTLFQAEELASLMVDISCQLGIKTSAVITHMDHPIGKMVGNAVEVIESIECLQGKGPNDLMELVTTQGGVLLYLKGICESPXXXXXXXXXXXXNGDALKKFEEMAIIQGVEKTVAENLCKNP----YSVLSLSSNNTILHASSSGFISDMKAISFGEVSSRLGNGRQVPTDDVTYDTGIQILRHVGDEVKSGDPILKVYHKEKTLDAGFKSKLEQAVTVSSTKP 1149
              GM  EE++ LT A+ +SG  L+WP  W+ Q+VDKHSTGGVGDK+SL+LAPA+A+CG K+PMISGR LG TGGTLDKLESIPGFN+  SPE +   L+ AGCCIVGQ+  LVPAD ILY+ RD+T+TV S PLI +SI+SKK  EG+SALV+DVK+G  +      QA ELA  +V +   LG++ +A +T MD P+G+ VG+A+EV E++ C+ G GP DL +LVTT GG LL+L G   +  +G   +   + +G AL +FE M   QGV+  +A  LC         +L  +     L A + G +  ++A+    V   LG GR    + +    G ++L  VG  ++ G P L+V+     L       L++A+ +S   P
Sbjct:   80 LRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPPDLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARALCSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAP 466
The following BLAST results are available for this feature:
BLAST of TCONS_00066467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYPH4.751e-10945.22Thymidine phosphorylase OS=Homo sapiens GN=TYMP PE... [more]
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