TCONS_00066466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066466
Unique NameTCONS_00066466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066466 ID=TCONS_00066466|Name=TCONS_00066466|organism=Clytia hemisphaerica|type=transcript|length=1719bp
ttTACAGGGATGACATCTGAGGAGTCTGCAGCATTGACATCAGCCATGAA
GAAATCAGGAGATGTTTTGGACTGGCCAGCTGAATGGAAAGATCAAGTAG
TTGATAAACACTCAACAGGTGGAGTGGGTGATAAAATCAGTTTGATTCTA
GCTCCTGCTGTAGCCTCTTGTGGACTAAAGCTACCAATGATATCTGGTCG
ATCTTTGGGATTCACTGGAGGAACATTGGACAAATTAGAATCCATCCCAG
GATTCAATATCAAATTCTCACCAGAAGACATCACCAAGGCTTTGGAGACT
GCTGGTTGTTGCATCGTTGGGCAGACGGCAACATTGGTACCTGCAGACAA
GATTTTATATTCCATTCGTGATATCACATCAACTGTTGGCTCATTCCCTT
TGATCGCAAGTTCCATCGTCTCCAAGAAAGCTGCTGagGGTATCTCAGCG
TTGGTGTTGGACGTTAAATACGGAAGTGGAAGCtaccaaaaaaccctatt
tcaAGCTGAAGAATTAGCTTCTCTTATGGTAGACATTAGTTGCCAACTTG
GTATCAAAACATCTGCTGTTATCACTCACATGGATCATCCTATTGGAAAG
ATGGTAGGCAATGCTGTGGAAGTCATTGAATCTATTGAATGTTTACAAGG
GAAAGGACCGAATGATCTGATGGAATTGGTCACCACTCAAGGTGGAGTTC
TCTTATATCTGAAAGGAATTTGCGAGAGCCCTGAAAAAGGAAAGGAGGAG
ATAGAACGACGAATTAAGAATGGAGACGcgttaaaaaaatttgaagagaT
GGCCATCGTACAAGGTGTTGAAAAAACTGTCGCTGAGAATCTCTGTAAAA
ATCCTTATTCCGTTCTCTCGTTATCATCAAACAATACTATTCTACATGCA
TCATCTTCAGGTTTCATTTCTGATATGAAGGCTATTTCGTTTGGAGAAGT
ATCTTCAAGATTAGGTAATGGACGTCAAGTTCCaaccgatgacgtcactt
aCGATACCGGAATACAGATTCTCCGACACGTCGGTGACGAAGTTAAGTCA
GGCGACCCCATACTGAAAGTATACCATAAAGAAAAGACACTAGATGCAGG
TTTCAAGAGTAAACTTGAACAAGCTGTCACTGTTTCATCTACCAAACCAA
AGCCTAGAAATCGTGTCGAGAAGGTTATTCATCGTTCTTCTTCGTCAAGT
CGTATTTTTATGGTGTCACAATAGAGAGTAATTACATTgtgtttttgatg
tgaaaaaaCCTTAACGTCAAATCAAATTCCATTGAAACAACTCTGTTTTA
TCGATCCGAAACCTTGTTCTTAAAACTGAATCGGACCATTGGGAATAGAG
AAGGTTTTTTGTAAGGATGTTAGAGTCAAGATAAAAAAATgtgatttgaa
atatttttaatatttttaatatttttgtatttttgatttttttttgtatt
tttgaatagGGGACCCAAAAAGACTGGAAACTAGAGCAAATGGTTTTCTT
CGTTCTGAGATCACAGCTTGTTATTTCAAAGAATAATATTAAGACGTCAA
ACTCATTGTAAGTTTTTGAGATTGCAAACGGTGGTTCTAGTCACGTGACC
TCGGTTAGAAAATTCAACCAAGAAGCGACTCTATATCAAGATGGGATTAT
ATTATTATTGCTCAACGAAAGGTTAATCTAGGAGCGATGAAGTACATTTT
CAATATACACAGCTTTAAG
Run BLAST on NCBI

protein sequence of TCONS_00066466-protein

>TCONS_00066466-protein ID=TCONS_00066466-protein|Name=TCONS_00066466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
FTGMTSEESAALTSAMKKSGDVLDWPAEWKDQVVDKHSTGGVGDKISLIL
APAVASCGLKLPMISGRSLGFTGGTLDKLESIPGFNIKFSPEDITKALET
AGCCIVGQTATLVPADKILYSIRDITSTVGSFPLIASSIVSKKAAEGISA
LVLDVKYGSGSYQKTLFQAEELASLMVDISCQLGIKTSAVITHMDHPIGK
MVGNAVEVIESIECLQGKGPNDLMELVTTQGGVLLYLKGICESPEKGKEE
IERRIKNGDALKKFEEMAIVQGVEKTVAENLCKNPYSVLSLSSNNTILHA
SSSGFISDMKAISFGEVSSRLGNGRQVPTDDVTYDTGIQILRHVGDEVKS
GDPILKVYHKEKTLDAGFKSKLEQAVTVSSTKPKPRNRVEKVIHRSSSSS
RIFMVSQ
Run BLAST on NCBI

transcript from alignment at scaffold_455:575984..579434-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066466 ID=TCONS_00066466|Name=TCONS_00066466|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at scaffold_455:575984..579434- (Clytia hemisphaerica)
TTTACAGGGATGACATCTGAGGAGTCTGCAGCATTGACATCAGCCATGAA
GAAATCAGGAGATGTTTTGGACTGGCCAGCTGAATGGAAAGATCAAGTAG
TTGATAAACACTCAACAGGTGGAGTGGGTGATAAAATCAGTTTGATTCTA
GCTCCTGCTGTAGCCTCTTGTGGACTAAAGGTATGGAAAACGATCTTGAT
TTATATGTTGAATTGAAATTACTCCTTTCACTATTACGGAAATGAAGATT
GACTTCAACCGCTTTGGACTTTATTGCAGGACACAAAAAAAGATACAAAA
TCAAAATTCTCAAATCCAGAATCGTTGAAGAAGATTCGACCTAATTTTTA
CATGCCTCATTTAATAGATATACTTCCTCAACATTACACAGTACACTTTT
TATGTTTTGTATAATGAATTTAGTGTGATAATGTTATCGAGGTGATTAAA
CGAATATTAAAGTGTACTTGCCAATGCTACGCAGCGATACAACTGAGTGG
TGTTAAGCACCAAAGCCACACCAACCACCCAACTACGTTAAACATCAGTT
AACCTTATCAAATAGAAAAAGAAACTGGAAAAAAAATACCTAAGAAAATT
TATCATTTATTTAGCTACCAATGATATCTGGTCGATCTTTGGGATTCACT
GGAGGAACATTGGACAAATTAGAATCCATCCCAGGATTCAATATCAAATT
CTCACCAGAAGACATCACCAAGGCTTTGGAGACTGCTGGTTGTTGCATCG
TTGGGCAGACGGCAACATTGGTACCTGCAGACAAGATTTTATATTCCATT
CGTGATATCACATCAACTGTTGGCTCATTCCCTTTGATCGCAAGTTCCAT
CGTCTCCAAGAAAGCTGCTGGTATAACAAAAATATACGTTTACTCTCTTT
GAATTTGAAGCGATAACATCTTTACACCCATAAGTTAAGTGAATTTAAAG
TACATAGAAATGGGATGAGAGGAACAAGGATGTCAGTCTTAAGGCTTCGC
CCTTGATCCCAGGACTAACATAATCGACGTTATATCAGGATGTTACTTGA
CGAGTTTTGTAGTCAGCTATCATAATTTATAGCTAGCAGACCAGAAGAGG
CGGTAGTGTGACAGTGATTATCATAAACGAATTCAAGGAAGAATTAGACT
TCTGTGCTCTTTATCTTTAAAAAGCAACTTTAGCAATGGAAAAAATGGCC
TTTTCCCACATGCCATCAACGAACTTAATATAGAAATCAAATGCAAAATG
TGGATTATTGACTGAAAAATCATACACCAGTGTCTGATCTGAGGGGAATT
CAAGATTTATGAAGGAGAGTGTCTCTTTTATCCATACTCCTTATAAGGAA
ATGAATACTCTCCTCCAAAGAATAAATTTTGAACCCCCTCAGATCCACCA
GCTTCATATGTTAAATTGTCTTTTTTTAACTTTTAGAGGGTATCTCAGCG
TTGGTGTTGGACGTTAAATACGGAAGTGGAAGCTACCAAAAAACCCTATT
TCAAGCTGAAGAATTAGCTTCTCTTATGGTAGACATTAGTTGCCAACTTG
GTATCAAAACATCTGCTGTTATCACTCACATGGATCATCCTATTGGAAAG
ATGGTAGGCAATGCTGTGGAAGTCATTGAATCTATTGAATGTTTACAAGG
GAAAGGACCGAATGATCTGATGGAATTGGTCACCACTCAAGGTATTAATA
TAACTGAATATCTATATTAGCCCCTCCCCCCAGCGGTTACCCAGAATNAC
CGAATGATCTGATGGAATTGGTCACCACTCAAGGTATTAATATAACTGAA
TATCTATATTAGCCCCTCCCCCCAGCGGTTACCCAGAATACGCGAATGGG
CTATTTCAGTTACGTGAATGCGTGAAAATTGAAAAACTTTGCTTGAACGG
AAATTGCGTAAATTGCAGAAAAAACATTGCGTGAATGCGTGAATTTGGAG
AAAAAAAATTGCGTGATTGCGTAAATTGAAGGACGTCTGGGTGGCCCCTA
TATCCCCCTATATCAAATGCTTAGCAAGATTTTTGAACTTGCAATTACAA
TATCAACAAATTGCTCACTTCTAAGTTAAAGTTTGAAAGGAAATCGCCAC
AAACCGAATTCAATTCATGTTTGTCATGTTTTGGCCACGCTGTCAGAAAT
ATTTGTGGTATGTGTGTTATAAGGCTATTGGGTATCATGTAGCAAATTNT
TTGGCCACGCTGTCATAAATATTTGTGGTATGTGTGTTATAAGGCTATTG
GGTATCATGTAGCAAATTTATAGAGCTACTTCTATAGAGAACAAAGGCTT
TTTTAATTGAAACAACAATGGTGCAGTGATTTGTTTTCTGTTCGTTTCCA
GGTGGAGTTCTCTTATATCTGAAAGGAATTTGCGAGAGCCCTGAAAAAGG
AAAGGAGGAGATAGAACGACGAATTAAGAATGGAGACGCGTTAAAAAAAT
TTGAAGAGATGGCCATCGTACAAGGTGTTGATAAAACTGTTGCTGAGAAT
CTCTGTAAAGNGTTAAAAACATTTGAAGAGATGGCCATCATACAAGGTGT
TGAAAAAACTGTCGCTGAGAATCTCTGTAAAAATCCTTATTCCGTTCTCT
CGTTATCATCAAACAATACTATTCTACATGCATCATCTTCAGGTTTCATT
TCTGATATGAAGGCTATTTCGTTTGGAGAAGTATCTTCAAGATTAGGTAA
TGGACGTCAAGTTCCAACCGATGACGTCACTTACGATACCGGAATACAGA
TTCTCCGACACGTCGGTGACGAAGTTAAGTCAGGCGACCCCATACTGAAA
GTATACCATAAAGAAAAGACACTAGATGCAGGTTTCAAGAGTAAACTTGA
ACAAGCTGTCACTGTTTCATCTACCAAACCAAAGCCTAGAAATCGTGTCG
AGAAGGTTATTCATCGTTCTTCTTCGTCAAGTCGTATTTTTATGGTGTCA
CAATAGAGAGTAATTACATTGTGTTTTTGATGTGAAAAAACCTTAACGTC
AAATCAAATTCCATTGAAACAACTCTGTTTTATCGATCCGAAACCTTGTT
CTTAAAACTGAATCGGACCATTGGGAATAGAGAAGGTTTTTTGTAAGGAT
GTTAGAGTCAAGATAAAAAAATGTGATTTGAAATATTTTTAATATTTTTA
ATATTTTTGTATTTTTGATTTTTTTTTGTATTTTTGAATAGGGGACCCAA
AAAGACTGGAAACTAGAGCAAATGGTTTTCTTCGTTCTGAGATCACAGCT
TGTTATTTCAAAGAATAATATTAAGACGTCAAACTCATTGTAAGTTTTTG
AGATTGCAAACGGTGGTTCTAGTCACGTGACCTCGGTTAGAAAATTCAAC
CAAGAAGCGACTCTATATCAAGATGGGATTATATTATTATTGCTCAACGA
AAGGTTAATCTAGGAGCGATGAAGTACATTTTCAATATACACAGCTTTAA
G

Coding sequence (CDS) from alignment at scaffold_455:575984..579434-

>TCONS_00066466 ID=TCONS_00066466|Name=TCONS_00066466|organism=Clytia hemisphaerica|type=CDS|length=6120bp|location=Sequence derived from alignment at scaffold_455:575984..579434- (Clytia hemisphaerica)
GTGTTGAAAAAACTGTCGCTGAGAATCTCTGTAAAAATCCTTATTCCGTT
CTCTCGTTATCATCAAACAATACTATTCTACATGCATCATCTTCAGGTTT
CATTTCTGATATGAAGGCTATTTCGTTTGGAGAAGTATCTTCAAGATTAG
GTAATGGACGTCAAGTTCCAACCGATGACGTCACTTACGATACCGGAATA
CAGATTCTCCGACACGTCGGTGACGAAGTTAAGTCAGGCGACCCCATACT
GAAAGTATACCATAAAGAAAAGACACTAGATGCAGGTTTCAAGAGTAAAC
TTGAACAAGCTGTCACTGTTTCATCTACCAAACCAAAGCCTAGAAATCGT
GTCGAGAAGGTTATTCATCGTTCTTCTTCGTCAAGTCGTATTTTTATGGT
GTCACAATAGGTGGAGTTCTCTTATATCTGAAAGGAATTTGCGAGAGCCC
TGAAAAAGGAAAGGAGGAGATAGAACGACGAATTAAGAATGGAGACGCGT
TAAAAAAATTTGAAGAGATGGCCATCGTACAAGAGGGTATCTCAGCGTTG
GTGTTGGACGTTAAATACGGAAGTGGAAGCTACCAAAAAACCCTATTTCA
AGCTGAAGAATTAGCTTCTCTTATGGTAGACATTAGTTGCCAACTTGGTA
TCAAAACATCTGCTGTTATCACTCACATGGATCATCCTATTGGAAAGATG
GTAGGCAATGCTGTGGAAGTCATTGAATCTATTGAATGTTTACAAGGGAA
AGGACCGAATGATCTGATGGAATTGGTCACCACTCAAGCTACCAATGATA
TCTGGTCGATCTTTGGGATTCACTGGAGGAACATTGGACAAATTAGAATC
CATCCCAGGATTCAATATCAAATTCTCACCAGAAGACATCACCAAGGCTT
TGGAGACTGCTGGTTGTTGCATCGTTGGGCAGACGGCAACATTGGTACCT
GCAGACAAGATTTTATATTCCATTCGTGATATCACATCAACTGTTGGCTC
ATTCCCTTTGATCGCAAGTTCCATCGTCTCCAAGAAAGCTGCTGTTTACA
GGGATGACATCTGAGGAGTCTGCAGCATTGACATCAGCCATGAAGAAATC
AGGAGATGTTTTGGACTGGCCAGCTGAATGGAAAGATCAAGTAGTTGATA
AACACTCAACAGGTGGAGTGGGTGATAAAATCAGTTTGATTCTAGCTCCT
GCTGTAGCCTCTTGTGGACTAAAGGTGTTGAAAAAACTGTCGCTGAGAAT
CTCTGTAAAAATCCTTATTCCGTTCTCTCGTTATCATCAAACAATACTAT
TCTACATGCATCATCTTCAGGTTTCATTTCTGATATGAAGGCTATTTCGT
TTGGAGAAGTATCTTCAAGATTAGGTAATGGACGTCAAGTTCCAACCGAT
GACGTCACTTACGATACCGGAATACAGATTCTCCGACACGTCGGTGACGA
AGTTAAGTCAGGCGACCCCATACTGAAAGTATACCATAAAGAAAAGACAC
TAGATGCAGGTTTCAAGAGTAAACTTGAACAAGCTGTCACTGTTTCATCT
ACCAAACCAAAGCCTAGAAATCGTGTCGAGAAGGTTATTCATCGTTCTTC
TTCGTCAAGTCGTATTTTTATGGTGTCACAATAGGTGGAGTTCTCTTATA
TCTGAAAGGAATTTGCGAGAGCCCTGAAAAAGGAAAGGAGGAGATAGAAC
GACGAATTAAGAATGGAGACGCGTTAAAAAAATTTGAAGAGATGGCCATC
GTACAAGAGGGTATCTCAGCGTTGGTGTTGGACGTTAAATACGGAAGTGG
AAGCTACCAAAAAACCCTATTTCAAGCTGAAGAATTAGCTTCTCTTATGG
TAGACATTAGTTGCCAACTTGGTATCAAAACATCTGCTGTTATCACTCAC
ATGGATCATCCTATTGGAAAGATGGTAGGCAATGCTGTGGAAGTCATTGA
ATCTATTGAATGTTTACAAGGGAAAGGACCGAATGATCTGATGGAATTGG
TCACCACTCAAGCTACCAATGATATCTGGTCGATCTTTGGGATTCACTGG
AGGAACATTGGACAAATTAGAATCCATCCCAGGATTCAATATCAAATTCT
CACCAGAAGACATCACCAAGGCTTTGGAGACTGCTGGTTGTTGCATCGTT
GGGCAGACGGCAACATTGGTACCTGCAGACAAGATTTTATATTCCATTCG
TGATATCACATCAACTGTTGGCTCATTCCCTTTGATCGCAAGTTCCATCG
TCTCCAAGAAAGCTGCTGTTTACAGGGATGACATCTGAGGAGTCTGCAGC
ATTGACATCAGCCATGAAGAAATCAGGAGATGTTTTGGACTGGCCAGCTG
AATGGAAAGATCAAGTAGTTGATAAACACTCAACAGGTGGAGTGGGTGAT
AAAATCAGTTTGATTCTAGCTCCTGCTGTAGCCTCTTGTGGACTAAAGGT
GTTGAAAAAACTGTCGCTGAGAATCTCTGTAAAAATCCTTATTCCGTTCT
CTCGTTATCATCAAACAATACTATTCTACATGCATCATCTTCAGGTTTCA
TTTCTGATATGAAGGCTATTTCGTTTGGAGAAGTATCTTCAAGATTAGGT
AATGGACGTCAAGTTCCAACCGATGACGTCACTTACGATACCGGAATACA
GATTCTCCGACACGTCGGTGACGAAGTTAAGTCAGGCGACCCCATACTGA
AAGTATACCATAAAGAAAAGACACTAGATGCAGGTTTCAAGAGTAAACTT
GAACAAGCTGTCACTGTTTCATCTACCAAACCAAAGCCTAGAAATCGTGT
CGAGAAGGTTATTCATCGTTCTTCTTCGTCAAGTCGTATTTTTATGGTGT
CACAATAGGTGGAGTTCTCTTATATCTGAAAGGAATTTGCGAGAGCCCTG
AAAAAGGAAAGGAGGAGATAGAACGACGAATTAAGAATGGAGACGCGTTA
AAAAAATTTGAAGAGATGGCCATCGTACAAGAGGGTATCTCAGCGTTGGT
GTTGGACGTTAAATACGGAAGTGGAAGCTACCAAAAAACCCTATTTCAAG
CTGAAGAATTAGCTTCTCTTATGGTAGACATTAGTTGCCAACTTGGTATC
AAAACATCTGCTGTTATCACTCACATGGATCATCCTATTGGAAAGATGGT
AGGCAATGCTGTGGAAGTCATTGAATCTATTGAATGTTTACAAGGGAAAG
GACCGAATGATCTGATGGAATTGGTCACCACTCAAGCTACCAATGATATC
TGGTCGATCTTTGGGATTCACTGGAGGAACATTGGACAAATTAGAATCCA
TCCCAGGATTCAATATCAAATTCTCACCAGAAGACATCACCAAGGCTTTG
GAGACTGCTGGTTGTTGCATCGTTGGGCAGACGGCAACATTGGTACCTGC
AGACAAGATTTTATATTCCATTCGTGATATCACATCAACTGTTGGCTCAT
TCCCTTTGATCGCAAGTTCCATCGTCTCCAAGAAAGCTGCTGTTTACAGG
GATGACATCTGAGGAGTCTGCAGCATTGACATCAGCCATGAAGAAATCAG
GAGATGTTTTGGACTGGCCAGCTGAATGGAAAGATCAAGTAGTTGATAAA
CACTCAACAGGTGGAGTGGGTGATAAAATCAGTTTGATTCTAGCTCCTGC
TGTAGCCTCTTGTGGACTAAAGGTGTTGAAAAAACTGTCGCTGAGAATCT
CTGTAAAAATCCTTATTCCGTTCTCTCGTTATCATCAAACAATACTATTC
TACATGCATCATCTTCAGGTTTCATTTCTGATATGAAGGCTATTTCGTTT
GGAGAAGTATCTTCAAGATTAGGTAATGGACGTCAAGTTCCAACCGATGA
CGTCACTTACGATACCGGAATACAGATTCTCCGACACGTCGGTGACGAAG
TTAAGTCAGGCGACCCCATACTGAAAGTATACCATAAAGAAAAGACACTA
GATGCAGGTTTCAAGAGTAAACTTGAACAAGCTGTCACTGTTTCATCTAC
CAAACCAAAGCCTAGAAATCGTGTCGAGAAGGTTATTCATCGTTCTTCTT
CGTCAAGTCGTATTTTTATGGTGTCACAATAGGTGGAGTTCTCTTATATC
TGAAAGGAATTTGCGAGAGCCCTGAAAAAGGAAAGGAGGAGATAGAACGA
CGAATTAAGAATGGAGACGCGTTAAAAAAATTTGAAGAGATGGCCATCGT
ACAAGAGGGTATCTCAGCGTTGGTGTTGGACGTTAAATACGGAAGTGGAA
GCTACCAAAAAACCCTATTTCAAGCTGAAGAATTAGCTTCTCTTATGGTA
GACATTAGTTGCCAACTTGGTATCAAAACATCTGCTGTTATCACTCACAT
GGATCATCCTATTGGAAAGATGGTAGGCAATGCTGTGGAAGTCATTGAAT
CTATTGAATGTTTACAAGGGAAAGGACCGAATGATCTGATGGAATTGGTC
ACCACTCAAGCTACCAATGATATCTGGTCGATCTTTGGGATTCACTGGAG
GAACATTGGACAAATTAGAATCCATCCCAGGATTCAATATCAAATTCTCA
CCAGAAGACATCACCAAGGCTTTGGAGACTGCTGGTTGTTGCATCGTTGG
GCAGACGGCAACATTGGTACCTGCAGACAAGATTTTATATTCCATTCGTG
ATATCACATCAACTGTTGGCTCATTCCCTTTGATCGCAAGTTCCATCGTC
TCCAAGAAAGCTGCTGTTTACAGGGATGACATCTGAGGAGTCTGCAGCAT
TGACATCAGCCATGAAGAAATCAGGAGATGTTTTGGACTGGCCAGCTGAA
TGGAAAGATCAAGTAGTTGATAAACACTCAACAGGTGGAGTGGGTGATAA
AATCAGTTTGATTCTAGCTCCTGCTGTAGCCTCTTGTGGACTAAAGGTGT
TGAAAAAACTGTCGCTGAGAATCTCTGTAAAAATCCTTATTCCGTTCTCT
CGTTATCATCAAACAATACTATTCTACATGCATCATCTTCAGGTTTCATT
TCTGATATGAAGGCTATTTCGTTTGGAGAAGTATCTTCAAGATTAGGTAA
TGGACGTCAAGTTCCAACCGATGACGTCACTTACGATACCGGAATACAGA
TTCTCCGACACGTCGGTGACGAAGTTAAGTCAGGCGACCCCATACTGAAA
GTATACCATAAAGAAAAGACACTAGATGCAGGTTTCAAGAGTAAACTTGA
ACAAGCTGTCACTGTTTCATCTACCAAACCAAAGCCTAGAAATCGTGTCG
AGAAGGTTATTCATCGTTCTTCTTCGTCAAGTCGTATTTTTATGGTGTCA
CAATAGGTGGAGTTCTCTTATATCTGAAAGGAATTTGCGAGAGCCCTGAA
AAAGGAAAGGAGGAGATAGAACGACGAATTAAGAATGGAGACGCGTTAAA
AAAATTTGAAGAGATGGCCATCGTACAAGAGGGTATCTCAGCGTTGGTGT
TGGACGTTAAATACGGAAGTGGAAGCTACCAAAAAACCCTATTTCAAGCT
GAAGAATTAGCTTCTCTTATGGTAGACATTAGTTGCCAACTTGGTATCAA
AACATCTGCTGTTATCACTCACATGGATCATCCTATTGGAAAGATGGTAG
GCAATGCTGTGGAAGTCATTGAATCTATTGAATGTTTACAAGGGAAAGGA
CCGAATGATCTGATGGAATTGGTCACCACTCAAGCTACCAATGATATCTG
GTCGATCTTTGGGATTCACTGGAGGAACATTGGACAAATTAGAATCCATC
CCAGGATTCAATATCAAATTCTCACCAGAAGACATCACCAAGGCTTTGGA
GACTGCTGGTTGTTGCATCGTTGGGCAGACGGCAACATTGGTACCTGCAG
ACAAGATTTTATATTCCATTCGTGATATCACATCAACTGTTGGCTCATTC
CCTTTGATCGCAAGTTCCATCGTCTCCAAGAAAGCTGCTGTTTACAGGGA
TGACATCTGAGGAGTCTGCAGCATTGACATCAGCCATGAAGAAATCAGGA
GATGTTTTGGACTGGCCAGCTGAATGGAAAGATCAAGTAGTTGATAAACA
CTCAACAGGTGGAGTGGGTGATAAAATCAGTTTGATTCTAGCTCCTGCTG
TAGCCTCTTGTGGACTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041580XLOC_041580Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066466-proteinTCONS_00066466-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066466-exon-scaffold_455-1575043694:579255..579434TCONS_00066466-exon-scaffold_455-1575043694:579255..579434Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1575043694:578565..578820TCONS_00066466-exon-scaffold_455-1575043694:578565..578820Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1575043694:577744..577998TCONS_00066466-exon-scaffold_455-1575043694:577744..577998Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1575043694:576961..577083TCONS_00066466-exon-scaffold_455-1575043694:576961..577083Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1575043694:575984..576888TCONS_00066466-exon-scaffold_455-1575043694:575984..576888Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1510915933:579255..579434TCONS_00066466-exon-scaffold_455-1510915933:579255..579434Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1510915933:578565..578820TCONS_00066466-exon-scaffold_455-1510915933:578565..578820Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1510915933:577744..577998TCONS_00066466-exon-scaffold_455-1510915933:577744..577998Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1510915933:576961..577083TCONS_00066466-exon-scaffold_455-1510915933:576961..577083Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1510915933:575984..576888TCONS_00066466-exon-scaffold_455-1510915933:575984..576888Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1491911889:579255..579434TCONS_00066466-exon-scaffold_455-1491911889:579255..579434Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1491911889:578565..578820TCONS_00066466-exon-scaffold_455-1491911889:578565..578820Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1491911889:577744..577998TCONS_00066466-exon-scaffold_455-1491911889:577744..577998Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1491911889:576961..577083TCONS_00066466-exon-scaffold_455-1491911889:576961..577083Clytia hemisphaericaexon
TCONS_00066466-exon-scaffold_455-1491911889:575984..576888TCONS_00066466-exon-scaffold_455-1491911889:575984..576888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:575984..579434 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5514	6.1672	5.73283	6.38997	38.3785	19.5122	25.5046	30.2678	9.59107	15.3637	0	6.5312	23.0351	36.5758	44.8936	45.5147	21.5886	17.5177	12.488	9.40878	9.58636	9.54014	12.4208	14.1806	0	0	6.95878	9.6701	18.6716	12.7001
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013102PYNP_C
IPR000312Glycosyl_Trfase_fam3
IPR000053Thymidine/pyrmidine_PPase
IPR018090Pyrmidine_PPas_bac/euk
Vocabulary: Biological Process
TermDefinition
GO:0006213pyrimidine nucleoside metabolic process
GO:0008152metabolic process
GO:0006206pyrimidine nucleobase metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016763transferase activity, transferring pentosyl groups
GO:0016757transferase activity, transferring glycosyl groups
GO:0004645phosphorylase activity
GO:0016154pyrimidine-nucleoside phosphorylase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006213 pyrimidine nucleoside metabolic process
molecular_function GO:0004645 phosphorylase activity
molecular_function GO:0016154 pyrimidine-nucleoside phosphorylase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0016763 transferase activity, transferring pentosyl groups
Blast
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BLAST of TCONS_00066466 vs. Swiss-Prot (Human)
Match: TYPH (Thymidine phosphorylase OS=Homo sapiens GN=TYMP PE=1 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 3.099e-109
Identity = 175/387 (45.22%), Postives = 242/387 (62.53%), Query Frame = 1 
Query:    1 FTGMTSEESAALTSAMKKSGDVLDWPAEWKDQVVDKHSTGGVGDKISLILAPAVASCGLKLPMISGRSLGFTGGTLDKLESIPGFNIKFSPEDITKALETAGCCIVGQTATLVPADKILYSIRDITSTVGSFPLIASSIVSKKAAEGISALVLDVKYGSGSYQKTLFQAEELASLMVDISCQLGIKTSAVITHMDHPIGKMVGNAVEVIESIECLQGKGPNDLMELVTTQGGVLLYLKGICESPXXXXXXXXXXXXNGDALKKFEEMAIVQGVEKTVAENLCKNP----YSVLSLSSNNTILHASSSGFISDMKAISFGEVSSRLGNGRQVPTDDVTYDTGIQILRHVGDEVKSGDPILKVYHKEKTLDAGFKSKLEQAVTVSSTKP 1149
              GM  EE++ LT A+ +SG  L+WP  W+ Q+VDKHSTGGVGDK+SL+LAPA+A+CG K+PMISGR LG TGGTLDKLESIPGFN+  SPE +   L+ AGCCIVGQ+  LVPAD ILY+ RD+T+TV S PLI +SI+SKK  EG+SALV+DVK+G  +      QA ELA  +V +   LG++ +A +T MD P+G+ VG+A+EV E++ C+ G GP DL +LVTT GG LL+L G   +  +G   +   + +G AL +FE M   QGV+  +A  LC         +L  +     L A + G +  ++A+    V   LG GR    + +    G ++L  VG  ++ G P L+V+     L       L++A+ +S   P
Sbjct:   80 LRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTLVGVGASLGLRVAAALTAMDKPLGRCVGHALEVEEALLCMDGAGPPDLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGLARALCSGSPAERRQLLPRAREQEELLAPADGTVELVRALPLALVLHELGAGRSRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGPALSGPQSRALQEALVLSDRAP 466
The following BLAST results are available for this feature:
BLAST of TCONS_00066466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYPH3.099e-10945.22Thymidine phosphorylase OS=Homo sapiens GN=TYMP PE... [more]
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