TCONS_00066465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066465
Unique NameTCONS_00066465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066465 ID=TCONS_00066465|Name=TCONS_00066465|organism=Clytia hemisphaerica|type=transcript|length=1064bp
NACCGAATGATCTGATGGAATTGGTCACCACTCAAGGTGGAGTTCTCTTA
TATCTGAAAGGAATTTGCGAGAGCCCTGAAAAAGGAAAGGAGGAGATAGA
ACGACGAATTAAGAATGGAGACGcgttaaaaaaatttgaagagaTGGCCA
TCGTACAAGGTGTTGAAAAAACTGTCGCTGAGAATCTCTGTAAAAATCCT
TATTCCGTTCTCTCGTTATCATCAAACAATACTATTCTACATGCATCATC
TTCAGGTTTCATTTCTGATATGAAGGCTATTTCGTTTGGAGAAGTATCTT
CAAGATTAGGTAATGGACGTCAAGTTCCaaccgatgacgtcacttaCGAT
ACCGGAATACAGATTCTCCGACACGTCGGTGACGAAGTTAAGTCAGGCGA
CCCCATACTGAAAGTATACCATAAAGAAAAGACACTAGATGCAGGTTTCA
AGAGTAAACTTGAACAAGCTGTCACTGTTTCATCTACCAAACCAAAGCCT
AGAAATCGTGTCGAGAAGGTTATTCATCGTTCTTCTTCGTCAAGTCGTAT
TTTTATGGTGTCACAATAGAGAGTAATTACATTgtgtttttgatgtgaaa
aaaCCTTAACGTCAAATCAAATTCCATTGAAACAACTCTGTTTTATCGAT
CCGAAACCTTGTTCTTAAAACTGAATCGGACCATTGGGAATAGAGAAGGT
TTTTTGTAAGGATGTTAGAGTCAAGATAAAAAAATgtgatttgaaatatt
tttaatatttttaatatttttgtatttttgatttttttttgtatttttga
atagGGGACCCAAAAAGACTGGAAACTAGAGCAAATGGTTTTCTTCGTTC
TGAGATCACAGCTTGTTATTTCAAAGAATAATATTAAGACGTCAAACTCA
TTGTAAGTTTTTGAGATTGCAAACGGTGGTTCTAGTCACGTGACCTCGGT
TAGAAAATTCAACCAAGAAGCGACTCTATATCAAGATGGGATTATATTAT
TATTGCTCAACGAAAGGTTAATCTAGGAGCGATGAAGTACATTTTCAATA
TACACAGCTTTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_455:575984..577687-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066465 ID=TCONS_00066465|Name=TCONS_00066465|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at scaffold_455:575984..577687- (Clytia hemisphaerica)
NACCGAATGATCTGATGGAATTGGTCACCACTCAAGGTATTAATATAACT
GAATATCTATATTAGCCCCTCCCCCCAGCGGTTACCCAGAATACGCGAAT
GGGCTATTTCAGTTACGTGAATGCGTGAAAATTGAAAAACTTTGCTTGAA
CGGAAATTGCGTAAATTGCAGAAAAAACATTGCGTGAATGCGTGAATTTG
GAGAAAAAAAATTGCGTGATTGCGTAAATTGAAGGACGTCTGGGTGGCCC
CTATATCCCCCTATATCAAATGCTTAGCAAGATTTTTGAACTTGCAATTA
CAATATCAACAAATTGCTCACTTCTAAGTTAAAGTTTGAAAGGAAATCGC
CACAAACCGAATTCAATTCATGTTTGTCATGTTTTGGCCACGCTGTCAGA
AATATTTGTGGTATGTGTGTTATAAGGCTATTGGGTATCATGTAGCAAAT
TNTTTGGCCACGCTGTCATAAATATTTGTGGTATGTGTGTTATAAGGCTA
TTGGGTATCATGTAGCAAATTTATAGAGCTACTTCTATAGAGAACAAAGG
CTTTTTTAATTGAAACAACAATGGTGCAGTGATTTGTTTTCTGTTCGTTT
CCAGGTGGAGTTCTCTTATATCTGAAAGGAATTTGCGAGAGCCCTGAAAA
AGGAAAGGAGGAGATAGAACGACGAATTAAGAATGGAGACGCGTTAAAAA
AATTTGAAGAGATGGCCATCGTACAAGGTGTTGATAAAACTGTTGCTGAG
AATCTCTGTAAAGNGTTAAAAACATTTGAAGAGATGGCCATCATACAAGG
TGTTGAAAAAACTGTCGCTGAGAATCTCTGTAAAAATCCTTATTCCGTTC
TCTCGTTATCATCAAACAATACTATTCTACATGCATCATCTTCAGGTTTC
ATTTCTGATATGAAGGCTATTTCGTTTGGAGAAGTATCTTCAAGATTAGG
TAATGGACGTCAAGTTCCAACCGATGACGTCACTTACGATACCGGAATAC
AGATTCTCCGACACGTCGGTGACGAAGTTAAGTCAGGCGACCCCATACTG
AAAGTATACCATAAAGAAAAGACACTAGATGCAGGTTTCAAGAGTAAACT
TGAACAAGCTGTCACTGTTTCATCTACCAAACCAAAGCCTAGAAATCGTG
TCGAGAAGGTTATTCATCGTTCTTCTTCGTCAAGTCGTATTTTTATGGTG
TCACAATAGAGAGTAATTACATTGTGTTTTTGATGTGAAAAAACCTTAAC
GTCAAATCAAATTCCATTGAAACAACTCTGTTTTATCGATCCGAAACCTT
GTTCTTAAAACTGAATCGGACCATTGGGAATAGAGAAGGTTTTTTGTAAG
GATGTTAGAGTCAAGATAAAAAAATGTGATTTGAAATATTTTTAATATTT
TTAATATTTTTGTATTTTTGATTTTTTTTTGTATTTTTGAATAGGGGACC
CAAAAAGACTGGAAACTAGAGCAAATGGTTTTCTTCGTTCTGAGATCACA
GCTTGTTATTTCAAAGAATAATATTAAGACGTCAAACTCATTGTAAGTTT
TTGAGATTGCAAACGGTGGTTCTAGTCACGTGACCTCGGTTAGAAAATTC
AACCAAGAAGCGACTCTATATCAAGATGGGATTATATTATTATTGCTCAA
CGAAAGGTTAATCTAGGAGCGATGAAGTACATTTTCAATATACACAGCTT
TAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041580XLOC_041580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066465-exon-scaffold_455-1575043694:577652..577687TCONS_00066465-exon-scaffold_455-1575043694:577652..577687Clytia hemisphaericaexon
TCONS_00066465-exon-scaffold_455-1575043694:576961..577083TCONS_00066465-exon-scaffold_455-1575043694:576961..577083Clytia hemisphaericaexon
TCONS_00066465-exon-scaffold_455-1575043694:575984..576888TCONS_00066465-exon-scaffold_455-1575043694:575984..576888Clytia hemisphaericaexon
TCONS_00066465-exon-scaffold_455-1510915933:577652..577687TCONS_00066465-exon-scaffold_455-1510915933:577652..577687Clytia hemisphaericaexon
TCONS_00066465-exon-scaffold_455-1510915933:576961..577083TCONS_00066465-exon-scaffold_455-1510915933:576961..577083Clytia hemisphaericaexon
TCONS_00066465-exon-scaffold_455-1510915933:575984..576888TCONS_00066465-exon-scaffold_455-1510915933:575984..576888Clytia hemisphaericaexon
TCONS_00066465-exon-scaffold_455-1491911889:577652..577687TCONS_00066465-exon-scaffold_455-1491911889:577652..577687Clytia hemisphaericaexon
TCONS_00066465-exon-scaffold_455-1491911889:576961..577083TCONS_00066465-exon-scaffold_455-1491911889:576961..577083Clytia hemisphaericaexon
TCONS_00066465-exon-scaffold_455-1491911889:575984..576888TCONS_00066465-exon-scaffold_455-1491911889:575984..576888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:575984..577687 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.343858	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.8998	0	0	0	0	0.774092	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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