TCONS_00066449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066449
Unique NameTCONS_00066449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066449 ID=TCONS_00066449|Name=TCONS_00066449|organism=Clytia hemisphaerica|type=transcript|length=623bp
AATCGGAAAGTTCAAGTGATGAAGAAGAATCTGATACGGATCAAATTGAA
TATATTGGCTGTTAACTGGATGCTGGACATGTATTTaatataaatttgaa
atgataacaaCGTGATAATACTTCAAAAGACTGCCATCGGAGAAAGAGTA
TCGTGCTATTTCGATTGATTGACGGAGAAAAAATTATGGTAAACGATCGA
AAGAGACAATCCAACTTGTAATGGttatatattacatgattttttttaga
agcatacaaaaatccgaaaacaggctcagagattcttaggtcgaaagctt
gataaggctgaaaaatgcttggggggatgcttaaatctaaagcataaatt
tcggaaatgctgaaaatctgtgaaattccagccaaaaaagccaaaatcag
gaaaaaaatattttttgtaggctcaagcaatgcttgccatatgctaaATT
TTCCCTATATCTGAGCCtcgatatgcttataagtgcaatgcttataaaaa
acatgtattctgcTTTTACCTAAACTTTAAAGTTATTAAAGACTGATTGA
CAATTGACAATTCAACGCAGACTATTTCATGAAGGAAGTAATGCATCATA
AACTCTCGACGCCtagatatttt
Run BLAST on NCBI

transcript from alignment at scaffold_455:46065..52781-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066449 ID=TCONS_00066449|Name=TCONS_00066449|organism=Clytia hemisphaerica|type=transcript|length=6717bp|location=Sequence derived from alignment at scaffold_455:46065..52781- (Clytia hemisphaerica)
AATCGGAAAGTTCAAGTGATGAAGAAGAATCTGATACGGATCAAATTGAA
TATATTGGGTATGTTTTGCTTACTTTTTACTTGATCATGATATCCAATAT
ATTTTTCCACTGGTTCTCAACTTCAATTGAGCTAGAATCTGAGAATGTAT
GTCTGTTAGTCAGTCAGTATGTCACCTCAATAAAACATTTGGACANTGCC
AATGATTATAAGATGGTTATCTTTCAATTAGCAAAATGATTTCCTTTCTG
ATTTGATTTGATACACATGTTATGGATATAGCATGTGGCTCCCTAGATTT
TATAGAGGAGGAGATCTCCTATAAACAACTTAACTTAAATTATTATGTTT
TAATAGCTAAAAAAAGACATGTGTACGAGCTTTTTGCTTATAGCTATATA
GGTAAATACTTTTGAAACATGAGCAGCCATGTGTCCTACATACAGGTGAC
AGGGAGAGATTCATCCTCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTCAAAGTTTTACTAGCCAAAGGAAT
ATTCTTGCTAAACATAAGATGATTATGTTTATATATTTCCTACTGTCTGG
ATTTCTGTCTCATTTGAATGGTTCAACTCTTTATAATACACAAAGAAATA
AGAAAATAACATAAGAAATTGATTAAAGTTTATGAAAATGTTTGACTTCA
TTTGTTGTTTCTATTTATTATCAACACTTGCCTTTAATTCATGGACATAT
ACTTAAACTTCCACTTACATTTTCATTTGTCAGATATTTTTATGACAAGT
CAAGAAAATTGAGATACAAAAACTAATATTTTGTAGTATGAGTGCATAGT
GCTTTGTGACTTGGTTTATTGTACACTCAATGATCGATACATTTCATATC
TAAAANCAAGGCGTTTGCGAACTACAATACTTTCCCTTTGAGATGATTCA
TGCTAAATGGCATTAATAAGCAAAACGATCATAAGAAAAACCATGACAAA
GCATCACACTGTGTTCATAACCAATACAGTTAGTCCGCCTTTAATGAAAT
ATTATTTTGTTAGATCTGGTCAGCTTAGTGGAGTCAGTCTTGGTTTACTT
GTGATTTGAAAAATCTAATTTCATATCCTAAAAAATTTGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTTTGCGAACTACAAT
ACTTTCCCTTTGAGGTGATTTATGCTAAGGCATAAATAAGCAAAAAAGAT
TGTAACCAAATCAATACCAAGCTACAGTTTATTCATATACCAAAGACATG
AAGTTAGATAACTTATGATGAGAAATAATTTGAGAATGTTTGTCTTTGTT
TTTCTCTTCATCTGTCTGTCTGTCTGTAACTTCAAAGATGTTCGGTTTTT
TTGGGTGAAACCTGGGGTAGTTTTTGTTTTAACTAATAGGTTTACAGTTT
CTCAGGCTTTGTCATTTCAAAATTCCAGAATCATTCCAAAATTGCACTCC
TAAAAAGTACTTTAGGCATGTGATGAGGAGTGCTATGAATAACTTTAGAA
GTAAAATCTAAATTTATGGCCTTTGTCTGATCGCACTCCTCAAGAATTTT
AGGTGTGTGTGAATCGTTAATTCAAACAACTACGACCCAAGTTTTTCTTT
ATACATACCATAGATACAACAGAACATAAATTTATCTTTAAAAAGCTCTA
AACACTAAAATAAAATCCTCCAAAAGCCAAAACAAGGTTGGAAACACAAA
AATCCTTCCTCTCGCTAAGGCCGTCATCTTGGTTTGAAAATGTTTAAATC
AAAATGTCTCATGGATTTCAGCGAATGGCAACATTTAGTGGGAAAGAGGA
TTTGCTGACTTTTAAGCAGCCTCTATAAGAAACTTTTTCTTTAAACGATG
AGCAGAAGCCTAGAGACTTCCAAAGACTTAAAGGGGAGTCTTTTATTTTC
AATTTCCTAAAGGGGGTTACCACTTAACAGGGGGGATTCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTCCCATAAATATCTGTTCTCATGATAATACTTGAAAATAGTAT
TTCTCAACCAGTACTATTGAATTATTTCCCCTTGATAATGATATTGTCAA
ACCTTTTAACAATAAGCTTGTCATTCAAGGTTTCAGGGCACTGAGCAAAA
AAATTTAAGGAAGTTTTTATGGGTGTTTTTGAGGAGCAGATGTAAATCTG
AACCTTTTCAGTCTTGAACCCAAAAATTCAAACCTTCAGACAGACAGGAA
ATCTAGTACTATTATTCTGGAAAGATGATTCAAGTTCTTGTTGTTTTTGT
TTTGATTTTTTTGTTTACTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNAGTGTCCGAAAAAAAATTGGCACCCAAGTTATTTTGATTCCCCTACCC
CTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAGATCGAGC
GATTTTACAAATTTCCCCCTACTATTTTGTTGATATAATATTTTCAAATT
GAAGAAAAAGTTTGAATCAAATATTTGTAATCTGATTAATTTTTTTTTCA
CTCTAGTGATCAAGTGATTTATGGATAATCAGCATTCAAAAGATGTCCAA
ATTGAAGAAATGGTAAAATTATTGTTTCTTGGGTTTAATGGAATATTACA
TTCTGCTGGGGTCTCAAAAGGGGGTGGCAAAAGGGGGTGGCAAATGTTTC
ATTTCAGGGAGATTCTGAAAAGGAGAAAGAAGGAGAGCATGGGAAAAAAG
TTTTGACAAAGCTGATACCATTTGCAGCAAATTTATTACTTAGCAGTTGA
AAAATCGTACATTATTGGTTAACTTACAAAGGGCTGAATCACTTTTTTTT
TGGCAAAATTTAAGAATAATGGGCTAAACGTCTCAGAGGGAGGGGCAAAA
GATGTTTCCTTTTTCTGGTTTGGAAGGTAATTTTTTGGTTTACAGACATT
GGAAAGGAACCTTTAGACCGGATGATGAAAAAAAAATTAAAATTAAATTG
TTTTTTTTTCAAACTTGAATTAATGGTTGAGAAAATAAAAGAAATGTGTT
TTGAGATACCAGAAAACAACGAAAGTTTTGTAGTAGTTAACTTGTGTTAA
GGGTGCCATTAAGGAAAGCATACAGTATTGGAGAGCTTTTGTTGTTCCTT
TCTATCGCATCATACCATATCATCCGATACGATCAGTTCCATTGATATCC
TGTGTGGTATTCTTGGCAGAAAATTAAAACTATCCATCATGACGCCTGCT
TTTAACCATGCAGATCATGATTATGATTGAAGCAATTCCTTTTCCATTTT
AGCTGTTAACTGGATGCTGGACATGTATTTAATATAAATTTGAAATGATA
ACAACGTGATAATACTTCAAAAGACTGCCATCGGAGAAAGAGTATCGTGC
TATTTCGATTGATTGACGGAGAAAAAATTATGGTAAACGATCGAAAGAGA
CAATCCAACTTGTAATGGTTATATATTACATGATTTTTTTTAGAAGCATA
CAAAAATCCGAAAACAGGCTCAGAGATTCTTAGGTCGAAAGCTTGATAAG
GCTGAAAAATGCTTGGGGGGATGCTTAAATCTAAAGCATAAATTTCGGAA
ATGCTGAAAATCTGTGAAATTCCAGCCAAAAAAGCCAAAATCAGGAAAAA
AATATTTTTTGTAGGCTCAAGCAATGCTTGCCATATGCTAAATTTTCCCT
ATATCTGAGCCTCGATATGCTTATAAGTGCAATGCTTATAAAAAACATGT
ATTCTGCTTTTACCTAAACTTTAAAGTTATTAAAGACTGATTGACAATTG
ACAATTCAACGCAGACTATTTCATGAAGGAAGTAATGCATCATAAACTCT
CGACGCCTAGATATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041570XLOC_041570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066449-exon-scaffold_455-1575043694:52724..52781TCONS_00066449-exon-scaffold_455-1575043694:52724..52781Clytia hemisphaericaexon
TCONS_00066449-exon-scaffold_455-1575043694:46065..46629TCONS_00066449-exon-scaffold_455-1575043694:46065..46629Clytia hemisphaericaexon
TCONS_00066449-exon-scaffold_455-1510915933:52724..52781TCONS_00066449-exon-scaffold_455-1510915933:52724..52781Clytia hemisphaericaexon
TCONS_00066449-exon-scaffold_455-1510915933:46065..46629TCONS_00066449-exon-scaffold_455-1510915933:46065..46629Clytia hemisphaericaexon
TCONS_00066449-exon-scaffold_455-1491911889:52724..52781TCONS_00066449-exon-scaffold_455-1491911889:52724..52781Clytia hemisphaericaexon
TCONS_00066449-exon-scaffold_455-1491911889:46065..46629TCONS_00066449-exon-scaffold_455-1491911889:46065..46629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:46065..52781 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67688	2.13743	1.27049	0.534801	7.61359	6.15108	8.63093	9.97892	5.69465	5.13333	3.37014	4.74139	3.46232	4.91481	4.06348	3.16068	2.22987	3.31695	2.79208	2.16	11.3434	10.4863	3.33306	5.58751	4.85615	10.949	3.55376	4.4511	5.39539	6.83247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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