|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066421 ID=TCONS_00066421|Name=TCONS_00066421|organism=Clytia hemisphaerica|type=transcript|length=3150bpRun BLAST on NCBI protein sequence of TCONS_00066421-protein >TCONS_00066421-protein ID=TCONS_00066421-protein|Name=TCONS_00066421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp MELCNSGFLFLYSQSKVQSLLITKDSPIDKDLQKLKEVASVDINIEQLLVRun BLAST on NCBI transcript from alignment at scaffold_455:311916..322148+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066421 ID=TCONS_00066421|Name=TCONS_00066421|organism=Clytia hemisphaerica|type=transcript|length=10233bp|location=Sequence derived from alignment at scaffold_455:311916..322148+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_455:311916..322148+ >TCONS_00066421 ID=TCONS_00066421|Name=TCONS_00066421|organism=Clytia hemisphaerica|type=CDS|length=37380bp|location=Sequence derived from alignment at scaffold_455:311916..322148+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066421 vs. Swiss-Prot (Human)
Match: PDE2A (cGMP-dependent 3',5'-cyclic phosphodiesterase OS=Homo sapiens GN=PDE2A PE=1 SV=1) HSP 1 Score: 586.26 bits (1510), Expect = 0.000e+0 Identity = 294/631 (46.59%), Postives = 431/631 (68.30%), Query Frame = 1
Query: 7 FGDKLLGKEYRMELCNSGFLFLYSQSKVQSLLITKDSPIDKDLQKLKEVASVDINIEQLLVVPAYSEVGDDVIALFCLFNKIGAKTGFTKLDEELMQMVVKNCRHIVCNALDWKSQLIIQRQNESLLEISKTLFSHLDDVSILLHKIMEEARNLTNAERCSLFLVDHNRGELIAKVFDG-IESENSSEIRIPITNGIAGYVATTGETLNIKDAYSHPLFYKEVDQKTGFKTRHILCFPIRSVSEQIIGVAQLCNKLNGNCFTKFDEERTLGFAIFVGLSLVQSLLYKKATDAKQRSKLANELMLYHMMVSQEEIDSYVKVAMPTKDSLHPDMDKFSFMPRISFAETDSIKVVLSMFNDLNVIKRWKVSESTLVRFILTVRRGYRDVPYHNWTHAWTVAHFSYTLLKKTNALDYLSDLEVFVLLVSCLCHDIDHRGTNNSFQIXXXXXXXXXXXXXGSVLERHHFAQAMCIVQTEHNNVFESLSSTDYKRALDLMQKMILATDLANHFKISKQLDELASTGIQKDEAAHRELLLSLFMTTSDLSDQTKPWESAVKVSDLLYQEFFSQGEMEKSLGYQPVKMMDKDLASIPDLQYSFLNNIAYPIYEKLSHFFPETNCILGNIKENQKQWSKI 1896
GDK+LG+E L + + +Q +T + D+Q+L+ + ++ + +L VP S D V+AL C FNK+ FT DE ++Q ++ + L ++ + ++ + ++LL+++K LF+HLDDVS+LL +I+ EARNL+NAE CS+FL+D N EL+AKVFDG + + S EIRIP GIAG+VATTG+ LNI DAY+HPLFY+ VD TGF+TR+ILCFPI++ ++++IGVA+L NK+NG F+KFDE+ F+I+ G+S+ SLLYKK +A+ RS LANE+M+YHM VS +E + + ++ + F++ PR S E D+ +LSM D+N I +K+ TL RF L V++GYRD PYHNW HA++V+HF Y L K +YL D+E+F L +SC+CHD+DHRGTNNSFQ++S+SVLA+LYSS GSV+ERHHFAQA+ I+ T N+F+ S DY+R LDLM+ +ILATDLA+H +I K L ++A G ++ H LLL L MT+ DLSDQTK W++ K+++L+Y+EFFSQG++EK++G +P++MMD++ A IP+LQ SF+ +IA PIY+ L FP+ + + N++ W+K+
Sbjct: 279 IGDKVLGEEVSFPLTGCLGQVVEDKKSIQLKDLTSE-----DVQQLQSMLGCEL--QAMLCVPVISRATDQVVALACAFNKLEGDL-FTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMMMYHMKVSDDEYTKLLHDGIQPVAAIDSNFASFTYTPR-SLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQKMAEVGYDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERVASNREHWTKV 898 The following BLAST results are available for this feature:
BLAST of TCONS_00066421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.