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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066381 ID=TCONS_00066381|Name=TCONS_00066381|organism=Clytia hemisphaerica|type=transcript|length=2204bp
TCTTAACAGTTCCACAGTTTCCCACATCGCTTCTAGAAAATTCAATCCGA
AAATACCACTGGATTTTCTCTTCTGTGAAAATACCACTGGGCTTTCTTAG
TAAATTTCTACCATTATCTCCAAAGTTTCACGGTTTGCACAGCCTTTCCG
CGAAACCAACTTAAAAAATTCCACCAGTTTCTAGTTAACTGCTACCACAG
ACTCTTCAAAATTCTCTGTTTGTTACACCTCGCCTCAAAAATTGTGTTGC
CAAAATACCACTGAATTTGCTCAATGTTTAATTACCACGTTTCAAAGATT
CACGGTTTGCAAACCCTCTCCTAGAAAACTCACNACCACGTTTCAAAGAT
TCACGGTTTGCAAACCCTCTCCTAAAAAAACCCAATTCGAAAATATCACC
ATTTTCCAAACTCTCATGGGCTGCCACAcctctcataaaaaaattcactt
caaaaacACCACCAGTGTTCTCAGTATTTTACCAACCCTCCACAGTCTCA
GTTTCTTCAAGGAATTTAGCCATACCACCAGTTTTTCCTAGTAGATTTAT
GATCATCTCTCTTCAGTACCACGGTTTGCTAATTTCCTCTCAAAGTATCA
GCAATAAGATACCAACTCTCTTCTCAATATTTTAAGGTTACACTAGAATC
TCAGGTTTCATGGCTCACATTTCCGATCCAAGATTCTAACGAATTATTAc
caaatatctaaaaatttccACATTTCACCTCTCTCAGTATTTCTTTATAA
ATCAGTCTCAAAATAtacatcaaaataaataataattcaCTGCAAATTGA
TCATCAGTCTAGTCAACTTCACCacaccaatttcaaaaaaccacTGTAAC
AACTCTCCTCCAAAGGTTCAGTCTCCGAATACCACTGATACCGGTACCAC
cattttctctttctctttctccCACTTTTTCACAGTTTGCCACACCTCTC
CTCGAGAGATTCATTCCAGTTACCGCCAATTATCTCAACGAGTTATAACC
ACTTCGATACACGTCTCCTCCAAAAAGTTCAGTCCCAATAAACCactgca
aatctcagtgaatttcaaatatttcaacaGCTTCCGTTTTGTTCACCTCT
CCCGGAGAGATTCCAAATTTCCACCAGTCTTTTCAATGAGTTATTACCAC
TCCGTCACACCTCTCCTCCAAAAATTTCAATCTCAATAAATTTCAGTCCT
CAATAAATCactgcaaatctcagtgaattTCACATCTTCTAACAGGTCAA
GGTTTGTCACATCTTTCTTTTCACATCCTAAATTACCATCGATTTGATCA
CCACACCTCTCCACATCTTTCAACAGTTTCACACTTTGCAACACCTCTCC
TCAaaagttcattttcaaaattaattcaaaatttcttaaCGTGCTATTAC
CACACTCATTCCTAAATTTTAACGTCCTCAGAATAGATTCCAACGCTTAT
CAAGCAAGAAATGGTGAAAAGCAGCCATCATGGCTCAACCGTCGATTCAG
CCAAGAGTATAATGCCTTCCAAGACATGGTCAACTGGCTAGGAAAGATGA
GAAGGAGCTAAGGACGGATGTTTCGTTGATTACACATCACATCCCTCTGT
CAGCATGACGGAATTGCCCGACGATGAAACTTTTCTGAAAAACCATTAAA
TGATCCAGCATGGCTTTTTCAGGCGACGCCCTAGAAGTGAGGCCATTGTG
GTGGCAATACAAGAAACACGTCTAAATAGACACCCAATACCAAAAACTTC
GGATTCGAACAATTGAAATTAACCTGATCAATCTGGTGCGACTTTCACAT
TCCAACAAAATTAGAAGAATCTGTCCAATCAAGGAACTTGGTTCAATCAG
GCTATCACAACACCACACCAATGGATATTTTATGAATGTCTTCATGTGTG
ATCTCGTTTTGTCCCAGAAAAGTCACATATCGAAATTTGCAATGTATGAT
GACCAACCAGTTCGAAGTAATGTGTGACATCTGCATTTGGTACAGAGgaA
AGCACCTAACTTCGAACTTCAAAGATTGCCATCAGTTCGCGTAGAATTTC
CAATGGATTTTGTACAACATAATCGAATGCTGGTATTTCTTATTCAAGAA
TGAAGTTAACTACTACAAAGCAGAGTACAGATTGttaaattcacaaaaat
attttttctttataatgaaTATATAACTTGATCATCAGAACAAAAGTTTT
CTCC Run BLAST on NCBI transcript from alignment at scaffold_454:112345..116520- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066381 ID=TCONS_00066381|Name=TCONS_00066381|organism=Clytia hemisphaerica|type=transcript|length=4176bp|location=Sequence derived from alignment at scaffold_454:112345..116520- (Clytia hemisphaerica)
TCTTAACAGTTCCACAGTTTCCCACATCGCTTCTAGAAAATTCAATCCGA
AAATACCACTGGATTTTCTCTTCTGTGAAAATACCACTGGGCTTTCTTAG
TAAATTTCTACCATTATCTCCAAAGTTTCACGGTTTGCACAGCCTTTCCG
CGAAACCAACTTAAAAAATTCCACCAGTTTCTAGTTAACTGCTACCACAG
ACTCTTCAAAATTCTCTGTTTGTTACACCTCGCCTCAAAAATTGTGTTGC
CAAAATACCACTGAATTTGCTCAATGTTTAATTACCACGTTTCAAAGATT
CACGGTTTGCAAACCCTCTCCTAGAAAACTCACNACCACGTTTCAAAGAT
TCACGGTTTGCAAACCCTCTCCTAAAAAAACCCAATTCGAAAATATCACC
ATTTTCCAAACTCTCATGGGCTGCCACACCTCTCATAAAAAAATTCACTT
CAAAAACACCACCAGTGTTCTCAGTATTTTACCAACCCTCCACAGTCTCA
GTTTCTTCAAGGAATTTAGCCATACCACCAGTTTTTCCTAGTAGATTTAT
GATCATCTCTCTTCAGTACCACGGTTTGCTAATTTCCTCTCAAAGTATCA
GCAATAAGATACCAACTCTCTTCTCAATATTTTAAGGTTACACTAGAATC
TCAGGTTTCATGGCTCACATTTCCGATCCAAGATTCTAACGAATTATTAC
CAAATATCTAAAAATTTCCACATTTCACCTCTCTCAGTATTTCTTTATAA
ATCAGTCTCAAAATATACATCAAAATAAATAATAATTCACTGCAAATTGA
TCATCAGTCTAGTCAACTTCACCACACCAATTTCAAAAAACCACTGTAAC
AACTCTCCTCCAAAGGTTCAGTCTCCGAATACCACTGATACCGGTACCAC
CATTTTCTCTTTCTCTTTCTCCCACTTTTTCACAGTTTGCCACACCTCTC
CTCGAGAGATTCATTCCAGTTACCGCCAATTATCTCAACGAGTTATAACC
ACTTCGATACACGTCTCCTCCAAAAAGTTCAGTCCCAATAAACCACTGCA
AATCTCAGTGAATTTCAAATATTTCAACAGCTTCCGTTTTGTTCACCTCT
CCCGGAGAGATTCCAAATTTCCACCAGTCTTTTCAATGAGTTATTACCAC
TCCGTCACACCTCTCCTCCAAAAATTTCAATCTCAATAAATTTCAGTCCT
CAATAAATCACTGCAAATCTCAGTGAATTTCACATCTTCTAACAGGTCAA
GGTTTGTCACATCTTTCTTTTCACATCCTAAATTACCATCGATTTGATCA
CCACACCTCTCCACATCTTTCAACAGTTTCACACTTTGCAACACCTCTCC
TCAAAAGTTCATTTTCAAAATTAATTCAAAATTTCTTAACGTGCTATTAC
CACACTCATTCCTAAATTTTAACGTCCTCAGAATAGATTCCAACGCTTAT
CAAGCAAGAAATGGTGAAAAGCAGCCATCATGGCTCAACCGTCGATTCAG
CCAAGAGTATAATGCCTTCCAAGACATGGTCAACTGGCTAGGAAAGATGA
GAAGGAGCTAAGGACGGATGTTTCGTTGATTACACATCACATCCCTCTGT
CAGCATGACGGAATTGCCCGACGATGAAACTTTTCTGAAAAACCATTAAA
TGATCCAGCATGGGTAAGTCTCTTGAATTACAACCACTACAACTTGATTA
GGCTCTAAACCGAAAGTGTTTACTGATGTTTGCTTTATTGATTTTCGTTC
CTTATTGTATACAAAAGGCCTTATTGAACCAAGGGAACATTTTTCAAGAA
TAGCCCTGCATTGCCAAAATGAAATTTTGCAGGTCATTTTACAATATCTT
ATCTATATCTATATTTTGTTTTGTTGCTGATATCCGGATAAATACATGAA
TACATGCAAGGACTTGAAATTCTGGCTTGTCATGAAAAAACAATTCTTAA
AACCCATTCCCACTGGAAAATTTGGCAAAAATTTGTTTCCTGATGCGAAA
ATACCCTGGAATTTTAGCTCCACTTTAATCTAAAGATTACACTCCTAAGT
TTTTTTAACTTTGGAACAACGAAATTTCTATCCCCATTGGGATTTCAATG
GGGATTTTTATCTCGACTGAAGAAAAAAGTTCCACCGGGGCTGCGAGACA
GGGGTGTTCTTAATTAATGGCTTCTTTTTTTGATAGCTTTTTCAGGCGAC
GCCCTAGAAGTGAGGCCATTGTGGTGGCAATACAAGAAACACGTCTAAAT
AGACACCCAATACCAAAAACTTCGGATTCGAACAATTGAAATTAACCTGA
TCAATCTGGTGCGACTTTCACATTCCAACAAAATTAGAAGTAGGTAAATG
ACGTGGCTAGTTCTGGGAATAATATATTTAGATGTTAAAAATATCATCTG
GACTTCCTCTGGACTAATAGAATCTCTTTGTGGCAAAAACACTCTCCTTG
TCACTCATTAAACGCTGGTGACCCCCTGAAAAGGCACGACAAGGAAACAT
AGTTTTAAATTCTGCTTCACTTTTTTCGGGACACAATGCTTTGATATTTT
AATTTTTGAATTATATTATTTAAGATTATCACTCGGCATCTAGAATTTAA
CCATACGCCAAATGAACTGTTCAACCTTGAGGCTTTTTACGGAATCTCAT
GAATTTATTTTCTTCTAGGAATCTGTCCAATCAAGGAACTTGGTTCAATC
AGGCTATCACAACACCACACCAATGGATATTTTATGAATGTCTTCATGTG
TGATCTCGTTTTGTCCCAGAAAAGTCACATATCGAAATTTGCAATGTATG
ATGACCAACCAGTTCGAAGTAATGTGTGACATCTGCATTTGGTACAGAGG
TAAGGTGATATTTTACAATATATCTGATATAGAAATTGATCACTCCATTT
TATTTAAGGGTGTACTTCAAGATGAATTTTTAGGGGTATAAGAAAGTTTA
ACTATTTTTCCAGAGAGTTTGGTTTGGGTCGTTCTTTCTCAAAAGGGGTT
CGTTCTGCGATCAAGCATCGCCTATGTTTTCCCGAGAGTTCTAAAGGAAA
ATATTTTGAATATCTATTGGGTTAAAAGTTATTTTGAAATTTCCAAAGAG
TTAATACTAATTTTGGTCCATCAATCCCACTTTTTGTTTATTTTTGCAAA
TTATGCCATTTACCAGGGGCTACCCGCACAATTTCAATAAATATTTTGGC
TTGAAAAGATCTGTCAAGAGAAACAGACCTTTCAAGCCAAAAGAGTCTTT
CAGGCCAAAAGATTTAGTGAAATTGTGTGTTTACCCCTTGCATGAACATT
AAATTCAAGACAAAGAGGCGCCTTTTCAATCTACAAAAGTACAATGCAAA
TTATATTAGTAGTATGACTTGATTTCCCCAGTGGAAAAATACCCTGGAAT
TTCAAACACACTGGGAAATTTAGTTTGATTTTATCCCATTCGAAATTCAA
TGTTTAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTATCCCCATCGGAATTTCAATAGAAGTTTTTATCCCCGCACCGAGGA
AAAAAGTTCCACCGGGGCTGTGAGACAGGGGTGTAAAGTTCCTTTAACAT
CATGTTAGGTTTTTAAAAGGGATCATTATTATATCAGCAGTAAAAAATAG
TCTTTTTGACTGCGACAGATAGTTGATCTATTCAAGGAATTCTTGATGAA
GCTTAGAAGTTCAATCAAAAGGTCCAATATTCAGAAAGAGCCTCATTCTC
AATTATCAATTATCTATATAGTGATTAAGAATTTCTTGTTTTATTGTTGA
ATTATTGTTTTGTTTTCAGGAAAGCACCTAACTTCGAACTTCAAAGATTG
CCATCAGTTCGCGTAGAATTTCCAATGGATTTTGTACAACATAATCGAAT
GCTGGTATTTCTTATTCAAGAATGAAGTTAACTACTACAAAGCAGAGTAC
AGATTGTTAAATTCACAAAAATATTTTTTCTTTATAATGAATATATAACT
TGATCATCAGAACAAAAGTTTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066381-exon-scaffold_454-1575043694:114858..116520 | TCONS_00066381-exon-scaffold_454-1575043694:114858..116520 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1575043694:114182..114334 | TCONS_00066381-exon-scaffold_454-1575043694:114182..114334 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1575043694:113672..113852 | TCONS_00066381-exon-scaffold_454-1575043694:113672..113852 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1575043694:112345..112551 | TCONS_00066381-exon-scaffold_454-1575043694:112345..112551 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1510915933:114858..116520 | TCONS_00066381-exon-scaffold_454-1510915933:114858..116520 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1510915933:114182..114334 | TCONS_00066381-exon-scaffold_454-1510915933:114182..114334 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1510915933:113672..113852 | TCONS_00066381-exon-scaffold_454-1510915933:113672..113852 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1510915933:112345..112551 | TCONS_00066381-exon-scaffold_454-1510915933:112345..112551 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1491911889:114858..116520 | TCONS_00066381-exon-scaffold_454-1491911889:114858..116520 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1491911889:114182..114334 | TCONS_00066381-exon-scaffold_454-1491911889:114182..114334 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1491911889:113672..113852 | TCONS_00066381-exon-scaffold_454-1491911889:113672..113852 | Clytia hemisphaerica | exon |
| TCONS_00066381-exon-scaffold_454-1491911889:112345..112551 | TCONS_00066381-exon-scaffold_454-1491911889:112345..112551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_454 | supercontig | scaffold_454:112345..116520 - |
Blast
The following BLAST results are available for this feature:
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