|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066282 ID=TCONS_00066282|Name=TCONS_00066282|organism=Clytia hemisphaerica|type=transcript|length=1584bp
aacaaaatatgggtcggtcggtcggtaaaataagaataaatttttcattt
atcaaggttggtaaagtaccgaaaatgttttctaaaaaatatccggattc
aaaaattcacttttttcttgaattaattttcagcgttattcaaatttaat
tcttccaaataactagtgtgtaaaatatattgtagtggaaattcaatatt
attatttttttgattttagcaaaaatagggtcggtcgagCCCGTagaaac
aacaaattaaattggtctcgccttatatGATTATGTATGCCATGTTATAT
TATCAAAATAAGATCATTTTCTCATCAAGCTTATATCTTCACCATTACGT
CATTGAATCGTAATGAATTCATGGATAGTTCTACAgaatcaaaatgaaac
aaaatattattttcaattttcatagcATCGCCTAGACTGataaaaaacca
tttaaaaacCTCTGAAggtgtcaaaaaattcaaaaatctggTCTGATTGT
ATATACAAAAGTAACCAGGAAAAAGACCCTTCAGCATAAAGAGCGCCATA
AGTCAAGGGCGGAAATGCCTGAAAAGGGTGGATTCAAACGCCCATCAAAG
TTTTAGCAGTCGagctttgtttttgaagaagctCACTTGCATATCGTTCC
ATTAGTTCTTGTTTTTTACGCTGAATCAGCATATCTTCGACATCTTTTTG
AGTCGGTACCGGTACATGAGAGACGAATCGTTTGTCTCGATTACCCGATT
CTTCCTCGCCTTCcccgtcactttcgttttcaccgAAATCGAATTTCTCC
GACGTGTAGATATTCTCGTCCGCGTCATCTGGCACTTTTATTTCTCCCCG
ATCACGTTTCTTTTCCCATTCCGTTATTTCCTCTTTCCGATTCCGTTGTT
CTAGTTCCATTTCCAAAGGCGCTAAAATTCCGTCATCGTCGTCTCGGTAA
CCATAGTAATCAGCatcaatattcttataaagttctCCTCTCGTCTTACG
GGGCGCTTTGGGTGGCTCCTGCTCAAAAAGCTCCCTTACGCCCGGTAAAT
CTTTAGCCGCCCCGAAATACTTATAGCCTCTATTCCCTGGTAGTTCCTTT
CCTTCATGATCAAGCATCCGCGGGCCGACTTTTGCGTAATTCGGCCCTTC
TAATTGAACAATACGTTCCTCCCAGTGACGTTTCTCTCGTAATAGCTTAT
TAATCTCATCATTCAAATCACGGATCCGGAACTCACCCATTCCCGCATTT
TGAATCtgtgaaactttttttgatatCTCACGGATAATCTGGTGGCGCCA
CTTCTCCGCTTCCTTCAAATTGTTGCATTCCGTAGCTAGGAACGGCCGCC
GGGTTGCCACTTGCGGTTTGTCTTCCGCATTCATCATAGCCGTCCAACGG
GACAAAATGGCCATTGCTTTTTCTGCACTACGAGCCATGATGAATGACTA
TGTTAGgtcttgtttttgtatttttatttagttttccTGAAAGAAAATCG
GCAGTTATTTGATTGTGATATTCAGTAAAGACAGTAAAACTACGAAAGAA
CAAAACGAAGGGAAAATCACTGTTCTGAATTACC Run BLAST on NCBI protein sequence of TCONS_00066282-protein >TCONS_00066282-protein ID=TCONS_00066282-protein|Name=TCONS_00066282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQ
IIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPN
YAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGVRELFEQEPPKAPRKTR
GELYKNIDADYYGYRDDDDGILAPLEMELEQRNRKEEITEWEKKRDRGEI
KVPDDADENIYTSEKFDFGENESDGEGEEESGNRDKRFVSHVPVPTQKDV
EDMLIQRKKQELMERYASELLQKQSSTAKTLMGV Run BLAST on NCBI transcript from alignment at scaffold_451:531947..533530 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066282 ID=TCONS_00066282|Name=TCONS_00066282|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at scaffold_451:531947..533530 (Clytia hemisphaerica)
GGTAATTCAGAACAGTGATTTTCCCTTCGTTTTGTTCTTTCGTAGTTTTA
CTGTCTTTACTGAATATCACAATCAAATAACTGCCGATTTTCTTTCAgga
aaactaaataaaaatacaaaaacaagacCTAACATAGTCATTCATCATGG
CTCGTAGTGCAGAAAAAGCAATGGCCATTTTGTCCCGTTGGACGGCTATG
ATGAATGCGGAAGACAAACCGCAAGTGGCAACCCGGCGGCCGTTCCTAGC
TACGGAATGCAACAATTTGAAGGAAGCGGAGAAGTGGCGCCACCAGATTA
TCCGTGAGatatcaaaaaaagtttcacaGATTCAAAATGCGGGAATGGGT
GAGTTCCGGATCCGTGATTTGAATGATGAGATTAATAAGCTATTACGAGA
GAAACGTCACTGGGAGGAACGTATTGTTCAATTAGAAGGGCCGAATTACG
CAAAAGTCGGCCCGCGGATGCTTGATCATGAAGGAAAGGAACTACCAGGG
AATAGAGGCTATAAGTATTTCGGGGCGGCTAAAGATTTACCGGGCGTAAG
GGAGCTTTTTGAGCAGGAGCCACCCAAAGCGCCCCGTAAGACGAGAGGag
aactttataagaatattgatGCTGATTACTATGGTTACCGAGACGACGAT
GACGGAATTTTAGCGCCTTTGGAAATGGAACTAGAACAACGGAATCGGAA
AGAGGAAATAACGGAATGGGAAAAGAAACGTGATCGGGGAGAAATAAAAG
TGCCAGATGACGCGGACGAGAATATCTACACGTCGGAGAAATTCGATTTc
ggtgaaaacgaaagtgacgggGAAGGCGAGGAAGAATCGGGTAATCGAGA
CAAACGATTCGTCTCTCATGTACCGGTACCGACTCAAAAAGATGTCGAAG
ATATGCTGATTCAGCGTAAAAAACAAGAACTAATGGAACGATATGCAAGT
GagcttcttcaaaaacaaagctCGACTGCTAAAACTTTGATGGGCGTTTG
AATCCACCCTTTTCAGGCATTTCCGCCCTTGACTTATGGCGCTCTTTATG
CTGAAGGGTCTTTTTCCTGGTTACTTTTGTATATACAATCAGAccagatt
tttgaattttttgacaccTTCAGAGgtttttaaatggttttttatCAGTC
TAGGCGATgctatgaaaattgaaaataatattttgtttcattttgattcT
GTAGAACTATCCATGAATTCATTACGATTCAATGACGTAATGGTGAAGAT
ATAAGCTTGATGAGAAAATGATCTTATTTTGATAATATAACATGGCATAC
ATAATCatataaggcgagaccaatttaatttgttgtttctACGGGctcga
ccgaccctatttttgctaaaatcaaaaaaataataatattgaatttccac
tacaatatattttacacactagttatttggaagaattaaatttgaataac
gctgaaaattaattcaagaaaaaagtgaatttttgaatccggatattttt
tagaaaacattttcggtactttaccaaccttgataaatgaaaaatttatt
cttattttaccgaccgaccgacccatattttgtt Coding sequence (CDS) from alignment at scaffold_451:531947..533530 >TCONS_00066282 ID=TCONS_00066282|Name=TCONS_00066282|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_451:531947..533530 (Clytia hemisphaerica)
ATGGCTCGTAGTGCAGAAAAAGCAATGGCCATTTTGTCCCGTTGGACGGC
TATGATGAATGCGGAAGACAAACCGCAAGTGGCAACCCGGCGGCCGTTCC
TAGCTACGGAATGCAACAATTTGAAGGAAGCGGAGAAGTGGCGCCACCAG
ATTATCCGTGAGatatcaaaaaaagtttcacaGATTCAAAATGCGGGAAT
GGGTGAGTTCCGGATCCGTGATTTGAATGATGAGATTAATAAGCTATTAC
GAGAGAAACGTCACTGGGAGGAACGTATTGTTCAATTAGAAGGGCCGAAT
TACGCAAAAGTCGGCCCGCGGATGCTTGATCATGAAGGAAAGGAACTACC
AGGGAATAGAGGCTATAAGTATTTCGGGGCGGCTAAAGATTTACCGGGCG
TAAGGGAGCTTTTTGAGCAGGAGCCACCCAAAGCGCCCCGTAAGACGAGA
GGagaactttataagaatattgatGCTGATTACTATGGTTACCGAGACGA
CGATGACGGAATTTTAGCGCCTTTGGAAATGGAACTAGAACAACGGAATC
GGAAAGAGGAAATAACGGAATGGGAAAAGAAACGTGATCGGGGAGAAATA
AAAGTGCCAGATGACGCGGACGAGAATATCTACACGTCGGAGAAATTCGA
TTTcggtgaaaacgaaagtgacgggGAAGGCGAGGAAGAATCGGGTAATC
GAGACAAACGATTCGTCTCTCATGTACCGGTACCGACTCAAAAAGATGTC
GAAGATATGCTGATTCAGCGTAAAAAACAAGAACTAATGGAACGATATGC
AAGTGagcttcttcaaaaacaaagctCGACTGCTAAAACTTTGATGGGCG
TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066282-exon-scaffold_451-1491911889:531947..533530 | TCONS_00066282-exon-scaffold_451-1491911889:531947..533530 | Clytia hemisphaerica | exon |
| TCONS_00066282-exon-scaffold_451-1510915933:531947..533530 | TCONS_00066282-exon-scaffold_451-1510915933:531947..533530 | Clytia hemisphaerica | exon |
| TCONS_00066282-exon-scaffold_451-1575043694:531947..533530 | TCONS_00066282-exon-scaffold_451-1575043694:531947..533530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:531947..533530 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009360 | Isy1 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000350 | generation of catalytic spliceosome for second transesterification step |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000350 |
generation of catalytic spliceosome for second transesterification step |
Blast
BLAST of TCONS_00066282 vs. Swiss-Prot (Human)
Match: ISY1 (Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1 PE=1 SV=3) HSP 1 Score: 288.5 bits (737), Expect = 8.068e-93 Identity = 170/289 (58.82%), Postives = 218/289 (75.43%), Query Frame = -3
Query: 590 MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQIIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPNYAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGVRELFEQEPPKAPRKTRGELYKNIXXXXXXXXXXXXGILAPLEMELEQRNRKEEITEWEKKRD----RGEIKVPDDADE--NIYTSEKXXXXXXXXXXXXXXXXXNRDKRFVSHVPVPTQKDVEDMLIQRKKQELMERYASELLQKQSSTAKTLMG 1438
MAR+AEKAM L+R+ E K V RRPFLA+EC L +AEKWR QII EISKKV+QIQNAG+GEFRIRDLNDEINKLLREK HWE RI +L GP+Y KVGP+MLDHEGKE+PGNRGYKYFGAAKDLPGVRELFE+EP PRKTR EL K ID +YYGY D+DDG++ PLE E E++ R E + +W+ +R+ RGE + ++ +E NIY + + E S +G ++S ++F++HVPVP+Q+++E+ L++RKK EL+++YASE LQ QS A+ L+G
Sbjct: 1 MARNAEKAMTALARFRQAQLEEGK--VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQ---QKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLG 284
The following BLAST results are available for this feature:
|
