TCONS_00066282-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066282-protein
Unique Name	TCONS_00066282-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	284

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066282-protein ID=TCONS_00066282-protein|Name=TCONS_00066282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQ
IIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPN
YAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGVRELFEQEPPKAPRKTR
GELYKNIDADYYGYRDDDDGILAPLEMELEQRNRKEEITEWEKKRDRGEI
KVPDDADENIYTSEKFDFGENESDGEGEEESGNRDKRFVSHVPVPTQKDV
EDMLIQRKKQELMERYASELLQKQSSTAKTLMGV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041484	XLOC_041484	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066282	TCONS_00066282	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009360	Isy1

Vocabulary: **Biological Process**
Term	Definition
GO:0000350	generation of catalytic spliceosome for second transesterification step

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000350	generation of catalytic spliceosome for second transesterification step

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..252
None	No IPR available	SUPERFAMILY	140102	ISY1 domain-like	coord: 29..103
IPR009360	Pre-mRNA-splicing factor Isy1	PFAM	PF06246	Isy1	coord: 1..265 e-value: 1.2E-94 score: 316.6

Blast

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BLAST of TCONS_00066282-protein vs. Swiss-Prot (Human)
Match: ISY1 (Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1 PE=1 SV=3)

HSP 1 Score: 331.257 bits (848), Expect = 1.193e-114
Identity = 173/289 (59.86%), Postives = 218/289 (75.43%), Query Frame = 0

Query:    1 MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQIIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPNYAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGVRELFEQEPPKAPRKTRGELYKNIDADYYGYRDDDDGILAPLEMELEQRNRKEEITEWEKKRD----RGEIKVPDDADENIYTSEKFDFGENESDGEGEEESGNRD--KRFVSHVPVPTQKDVEDMLIQRKKQELMERYASELLQKQSSTAKTLMG 283
            MAR+AEKAM  L+R+      E K  V  RRPFLA+EC  L +AEKWR QII EISKKV+QIQNAG+GEFRIRDLNDEINKLLREK HWE RI +L GP+Y KVGP+MLDHEGKE+PGNRGYKYFGAAKDLPGVRELFE+EP   PRKTR EL K ID +YYGY D+DDG++ PLE E E++ R E + +W+ +R+    RGE +  ++ +E I     +   E ESD EG +E G  D  ++F++HVPVP+Q+++E+ L++RKK EL+++YASE LQ QS  A+ L+G
Sbjct:    1 MARNAEKAMTALARFRQAQLEEGK--VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINI---YAVTEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLG 284

The following BLAST results are available for this feature:

BLAST of TCONS_00066282-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066282-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
ISY1	1.193e-114	59.86	Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapi...	[more]

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TCONS_00066282-protein (polypeptide) - C. hemisphaerica

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