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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066282 ID=TCONS_00066282|Name=TCONS_00066282|organism=Clytia hemisphaerica|type=transcript|length=1584bp aacaaaatatgggtcggtcggtcggtaaaataagaataaatttttcattt atcaaggttggtaaagtaccgaaaatgttttctaaaaaatatccggattc aaaaattcacttttttcttgaattaattttcagcgttattcaaatttaat tcttccaaataactagtgtgtaaaatatattgtagtggaaattcaatatt attatttttttgattttagcaaaaatagggtcggtcgagCCCGTagaaac aacaaattaaattggtctcgccttatatGATTATGTATGCCATGTTATAT TATCAAAATAAGATCATTTTCTCATCAAGCTTATATCTTCACCATTACGT CATTGAATCGTAATGAATTCATGGATAGTTCTACAgaatcaaaatgaaac aaaatattattttcaattttcatagcATCGCCTAGACTGataaaaaacca tttaaaaacCTCTGAAggtgtcaaaaaattcaaaaatctggTCTGATTGT ATATACAAAAGTAACCAGGAAAAAGACCCTTCAGCATAAAGAGCGCCATA AGTCAAGGGCGGAAATGCCTGAAAAGGGTGGATTCAAACGCCCATCAAAG TTTTAGCAGTCGagctttgtttttgaagaagctCACTTGCATATCGTTCC ATTAGTTCTTGTTTTTTACGCTGAATCAGCATATCTTCGACATCTTTTTG AGTCGGTACCGGTACATGAGAGACGAATCGTTTGTCTCGATTACCCGATT CTTCCTCGCCTTCcccgtcactttcgttttcaccgAAATCGAATTTCTCC GACGTGTAGATATTCTCGTCCGCGTCATCTGGCACTTTTATTTCTCCCCG ATCACGTTTCTTTTCCCATTCCGTTATTTCCTCTTTCCGATTCCGTTGTT CTAGTTCCATTTCCAAAGGCGCTAAAATTCCGTCATCGTCGTCTCGGTAA CCATAGTAATCAGCatcaatattcttataaagttctCCTCTCGTCTTACG GGGCGCTTTGGGTGGCTCCTGCTCAAAAAGCTCCCTTACGCCCGGTAAAT CTTTAGCCGCCCCGAAATACTTATAGCCTCTATTCCCTGGTAGTTCCTTT CCTTCATGATCAAGCATCCGCGGGCCGACTTTTGCGTAATTCGGCCCTTC TAATTGAACAATACGTTCCTCCCAGTGACGTTTCTCTCGTAATAGCTTAT TAATCTCATCATTCAAATCACGGATCCGGAACTCACCCATTCCCGCATTT TGAATCtgtgaaactttttttgatatCTCACGGATAATCTGGTGGCGCCA CTTCTCCGCTTCCTTCAAATTGTTGCATTCCGTAGCTAGGAACGGCCGCC GGGTTGCCACTTGCGGTTTGTCTTCCGCATTCATCATAGCCGTCCAACGG GACAAAATGGCCATTGCTTTTTCTGCACTACGAGCCATGATGAATGACTA TGTTAGgtcttgtttttgtatttttatttagttttccTGAAAGAAAATCG GCAGTTATTTGATTGTGATATTCAGTAAAGACAGTAAAACTACGAAAGAA CAAAACGAAGGGAAAATCACTGTTCTGAATTACC Run BLAST on NCBI protein sequence of TCONS_00066282-protein >TCONS_00066282-protein ID=TCONS_00066282-protein|Name=TCONS_00066282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQ IIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPN YAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGVRELFEQEPPKAPRKTR GELYKNIDADYYGYRDDDDGILAPLEMELEQRNRKEEITEWEKKRDRGEI KVPDDADENIYTSEKFDFGENESDGEGEEESGNRDKRFVSHVPVPTQKDV EDMLIQRKKQELMERYASELLQKQSSTAKTLMGV Run BLAST on NCBI transcript from alignment at scaffold_451:531947..533530 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066282 ID=TCONS_00066282|Name=TCONS_00066282|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at scaffold_451:531947..533530 (Clytia hemisphaerica) GGTAATTCAGAACAGTGATTTTCCCTTCGTTTTGTTCTTTCGTAGTTTTA
CTGTCTTTACTGAATATCACAATCAAATAACTGCCGATTTTCTTTCAgga
aaactaaataaaaatacaaaaacaagacCTAACATAGTCATTCATCATGG
CTCGTAGTGCAGAAAAAGCAATGGCCATTTTGTCCCGTTGGACGGCTATG
ATGAATGCGGAAGACAAACCGCAAGTGGCAACCCGGCGGCCGTTCCTAGC
TACGGAATGCAACAATTTGAAGGAAGCGGAGAAGTGGCGCCACCAGATTA
TCCGTGAGatatcaaaaaaagtttcacaGATTCAAAATGCGGGAATGGGT
GAGTTCCGGATCCGTGATTTGAATGATGAGATTAATAAGCTATTACGAGA
GAAACGTCACTGGGAGGAACGTATTGTTCAATTAGAAGGGCCGAATTACG
CAAAAGTCGGCCCGCGGATGCTTGATCATGAAGGAAAGGAACTACCAGGG
AATAGAGGCTATAAGTATTTCGGGGCGGCTAAAGATTTACCGGGCGTAAG
GGAGCTTTTTGAGCAGGAGCCACCCAAAGCGCCCCGTAAGACGAGAGGag
aactttataagaatattgatGCTGATTACTATGGTTACCGAGACGACGAT
GACGGAATTTTAGCGCCTTTGGAAATGGAACTAGAACAACGGAATCGGAA
AGAGGAAATAACGGAATGGGAAAAGAAACGTGATCGGGGAGAAATAAAAG
TGCCAGATGACGCGGACGAGAATATCTACACGTCGGAGAAATTCGATTTc
ggtgaaaacgaaagtgacgggGAAGGCGAGGAAGAATCGGGTAATCGAGA
CAAACGATTCGTCTCTCATGTACCGGTACCGACTCAAAAAGATGTCGAAG
ATATGCTGATTCAGCGTAAAAAACAAGAACTAATGGAACGATATGCAAGT
GagcttcttcaaaaacaaagctCGACTGCTAAAACTTTGATGGGCGTTTG
AATCCACCCTTTTCAGGCATTTCCGCCCTTGACTTATGGCGCTCTTTATG
CTGAAGGGTCTTTTTCCTGGTTACTTTTGTATATACAATCAGAccagatt
tttgaattttttgacaccTTCAGAGgtttttaaatggttttttatCAGTC
TAGGCGATgctatgaaaattgaaaataatattttgtttcattttgattcT
GTAGAACTATCCATGAATTCATTACGATTCAATGACGTAATGGTGAAGAT
ATAAGCTTGATGAGAAAATGATCTTATTTTGATAATATAACATGGCATAC
ATAATCatataaggcgagaccaatttaatttgttgtttctACGGGctcga
ccgaccctatttttgctaaaatcaaaaaaataataatattgaatttccac
tacaatatattttacacactagttatttggaagaattaaatttgaataac
gctgaaaattaattcaagaaaaaagtgaatttttgaatccggatattttt
tagaaaacattttcggtactttaccaaccttgataaatgaaaaatttatt
cttattttaccgaccgaccgacccatattttgtt Coding sequence (CDS) from alignment at scaffold_451:531947..533530 >TCONS_00066282 ID=TCONS_00066282|Name=TCONS_00066282|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_451:531947..533530 (Clytia hemisphaerica) ATGGCTCGTAGTGCAGAAAAAGCAATGGCCATTTTGTCCCGTTGGACGGC TATGATGAATGCGGAAGACAAACCGCAAGTGGCAACCCGGCGGCCGTTCC TAGCTACGGAATGCAACAATTTGAAGGAAGCGGAGAAGTGGCGCCACCAG ATTATCCGTGAGatatcaaaaaaagtttcacaGATTCAAAATGCGGGAAT GGGTGAGTTCCGGATCCGTGATTTGAATGATGAGATTAATAAGCTATTAC GAGAGAAACGTCACTGGGAGGAACGTATTGTTCAATTAGAAGGGCCGAAT TACGCAAAAGTCGGCCCGCGGATGCTTGATCATGAAGGAAAGGAACTACC AGGGAATAGAGGCTATAAGTATTTCGGGGCGGCTAAAGATTTACCGGGCG TAAGGGAGCTTTTTGAGCAGGAGCCACCCAAAGCGCCCCGTAAGACGAGA GGagaactttataagaatattgatGCTGATTACTATGGTTACCGAGACGA CGATGACGGAATTTTAGCGCCTTTGGAAATGGAACTAGAACAACGGAATC GGAAAGAGGAAATAACGGAATGGGAAAAGAAACGTGATCGGGGAGAAATA AAAGTGCCAGATGACGCGGACGAGAATATCTACACGTCGGAGAAATTCGA TTTcggtgaaaacgaaagtgacgggGAAGGCGAGGAAGAATCGGGTAATC GAGACAAACGATTCGTCTCTCATGTACCGGTACCGACTCAAAAAGATGTC GAAGATATGCTGATTCAGCGTAAAAAACAAGAACTAATGGAACGATATGC AAGTGagcttcttcaaaaacaaagctCGACTGCTAAAACTTTGATGGGCG TTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066282-exon-scaffold_451-1491911889:531947..533530 | TCONS_00066282-exon-scaffold_451-1491911889:531947..533530 | Clytia hemisphaerica | exon |
TCONS_00066282-exon-scaffold_451-1510915933:531947..533530 | TCONS_00066282-exon-scaffold_451-1510915933:531947..533530 | Clytia hemisphaerica | exon |
TCONS_00066282-exon-scaffold_451-1575043694:531947..533530 | TCONS_00066282-exon-scaffold_451-1575043694:531947..533530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_451 | supercontig | scaffold_451:531947..533530 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR009360 | Isy1 |
Vocabulary: Biological Process
Term | Definition |
GO:0000350 | generation of catalytic spliceosome for second transesterification step |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0000350 |
generation of catalytic spliceosome for second transesterification step |
Blast
BLAST of TCONS_00066282 vs. Swiss-Prot (Human)
Match: ISY1 (Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1 PE=1 SV=3) HSP 1 Score: 288.5 bits (737), Expect = 8.068e-93 Identity = 170/289 (58.82%), Postives = 218/289 (75.43%), Query Frame = -3
Query: 590 MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQIIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPNYAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGVRELFEQEPPKAPRKTRGELYKNIXXXXXXXXXXXXGILAPLEMELEQRNRKEEITEWEKKRD----RGEIKVPDDADE--NIYTSEKXXXXXXXXXXXXXXXXXNRDKRFVSHVPVPTQKDVEDMLIQRKKQELMERYASELLQKQSSTAKTLMG 1438
MAR+AEKAM L+R+ E K V RRPFLA+EC L +AEKWR QII EISKKV+QIQNAG+GEFRIRDLNDEINKLLREK HWE RI +L GP+Y KVGP+MLDHEGKE+PGNRGYKYFGAAKDLPGVRELFE+EP PRKTR EL K ID +YYGY D+DDG++ PLE E E++ R E + +W+ +R+ RGE + ++ +E NIY + + E S +G ++S ++F++HVPVP+Q+++E+ L++RKK EL+++YASE LQ QS A+ L+G
Sbjct: 1 MARNAEKAMTALARFRQAQLEEGK--VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQ---QKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLG 284
The following BLAST results are available for this feature:
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