TCONS_00066015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066015
Unique NameTCONS_00066015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066015 ID=TCONS_00066015|Name=TCONS_00066015|organism=Clytia hemisphaerica|type=transcript|length=1720bp
taaatacattcgaaaacatttaaaacaaaagaagaaagaaaaaggcaAGT
CTGGGCAGaagttaaaattactaaatgtagatgggccttaaatttcaaaa
caaaggcttaataaagtctaaaccaagctctatccgatcttttgcaaatg
gcgcgaatccaataaaacaaatttgtggagtaagagactaaaagtcataa
ttttaaaacacaaacaaagcgaaaacgaaagtagaaaacacagacaaaca
cacatacagactaccactattaatatatagatttgaGCTGATTAAGAGTG
ACCAATCATCGTCAAAAATTACTGGTCCGTATAAGAAACAAAGAGTATCA
CTCAGTTTAAATAAGAGGAATTCATAAACAAATGTGCGGATCTAGagaca
aaacaaaagaatattttaagtttTATTGGCTAACATAACTCAACTGTATT
TCAAGTTACTTGACAAAATTTATGTACTTTTAGGTTACCATTCTATAGAA
CTCTTGAatctaaaactttacaattcaCCGTCAGACATTAGTTGgtgtaa
ttattttcaaaaagaatccaaaaacaacaataaaGAATTAGGTTAAGACA
CACATAATACAATATAAAGGAAAATAAAGCCCTAGTCACATTATTCAGTT
TTCTTGACAACCATATCACTATTTTCAAGCTCCTTCACCAAATCCATATA
TTTAAAAGCATCAggattcttattaaaagtgagCATCAAATCCGCTTTCC
TTTCATCGGGCGCCACATAAAATAATTTCTGTAACTGCGCTAAACATTGA
GCTTCAAAGATGTTCATAGCGCTCTGGTCAAGCTCGGATGTCATCAAAAC
AACACCTTTGTCTTCTGCAAGCTCTGGATAAAAAGTAATGCAGAACTGCC
AAGGAGCNTCATCAAAACAATGCCTTTGTCTTCTGCAAGCTCTGGATAAA
AAGTAATGCAGAACTGCCAAGGAGCATTTTCACCATGTacttgaaaattg
attaaagaAGTGAAAAAGCATCTGTTACCTTCAAATTGGGATAATACAAA
CTCGTACCCATTTTCTTTAGGTAAAGGGTATAAAAAGGTTGGGAATTCTN
GAATTGAGATAATACAAACTCGTACCCATTCTCTTTAGGTAAAGGGTATA
AAAAGGTTGGGAACTCTTCTGCTCTTGTAGACATTTCCTTAAAAGATTCA
GCTGGAATGATAGCACTGATAGCGGtctggtctttaaaatgttctgTCCA
GATGTGTGAGATTTCATCAGCTGTTTTAGATTGCAACAGATCCAAATGGA
TAAGCTCATCTAAACGCGAAGGTAGCTTTGAACCTCGTTTATCTTCTtgc
tctttctttttttttgataatttctccTCGACAGATTGGATGCTACGTTT
CCATCTCTCTGTCTCACGCTTTAGCCGGGCGTCACCATGGAACGTCTTGT
TCCCATATTGTTTAGCCTCATTCTGCACCTTCTTGATCTTGTCGgcgtat
ttttcaaaataaggaTTATGTTCTAATTCTGCATCTTCATTCTGTTCTTC
TTTACTGTTCCACCATGCACTTGTTGTTGATATGCAACGCTGTTTGGCCA
GTTGACGAGATATCAGCCGTCCATAAGTCACTGAGTTCAACAATCTTCGA
GAAATCATTcctttttattcctttttttaaactttttttacccTGGAAAA
ACATAAAAAGAGAACATTAG
Run BLAST on NCBI

protein sequence of TCONS_00066015-protein

>TCONS_00066015-protein ID=TCONS_00066015-protein|Name=TCONS_00066015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MISRRLLNSVTYGRLISRQLAKQRCISTTSAWWNSKEEQNEDAELEHNPY
FEKYADKIKKVQNEAKQYGNKTFHGDARLKRETERWKRSIQSVEEKLSKK
KKEQEDKRGSKLPSRLDELIHLDLLQSKTADEISHIWTEHFKDQTAISAI
IPAESFKEMSTRAEEFPTFLYPLPKENGYEFVLSQFXNSQPFYTLYLKKM
GTSLYYPNLKVTDAFSLL
Run BLAST on NCBI

transcript from alignment at scaffold_448:216438..218157

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066015 ID=TCONS_00066015|Name=TCONS_00066015|organism=Clytia hemisphaerica|type=transcript|length=1720bp|location=Sequence derived from alignment at scaffold_448:216438..218157 (Clytia hemisphaerica)
CTAATGTTCTCTTTTTATGTTTTTCCAgggtaaaaaaagtttaaaaaaag
gaataaaaaggAATGATTTCTCGAAGATTGTTGAACTCAGTGACTTATGG
ACGGCTGATATCTCGTCAACTGGCCAAACAGCGTTGCATATCAACAACAA
GTGCATGGTGGAACAGTAAAGAAGAACAGAATGAAGATGCAGAATTAGAA
CATAAtccttattttgaaaaatacgcCGACAAGATCAAGAAGGTGCAGAA
TGAGGCTAAACAATATGGGAACAAGACGTTCCATGGTGACGCCCGGCTAA
AGCGTGAGACAGAGAGATGGAAACGTAGCATCCAATCTGTCGAggagaaa
ttatcaaaaaaaaagaaagagcaAGAAGATAAACGAGGTTCAAAGCTACC
TTCGCGTTTAGATGAGCTTATCCATTTGGATCTGTTGCAATCTAAAACAG
CTGATGAAATCTCACACATCTGGAcagaacattttaaagaccagaCCGCT
ATCAGTGCTATCATTCCAGCTGAATCTTTTAAGGAAATGTCTACAAGAGC
AGAAGAGTTCCCAACCTTTTTATACCCTTTACCTAAAGAGAATGGGTACG
AGTTTGTATTATCTCAATTCNAGAATTCCCAACCTTTTTATACCCTTTAC
CTAAAGAAAATGGGTACGAGTTTGTATTATCCCAATTTGAAGGTAACAGA
TGCTTTTTCACTtctttaatcaattttcaagtACATGGTGAAAATGCTCC
TTGGCAGTTCTGCATTACTTTTTATCCAGAGCTTGCAGAAGACAAAGGCA
TTGTTTTGATGANGCTCCTTGGCAGTTCTGCATTACTTTTTATCCAGAGC
TTGCAGAAGACAAAGGTGTTGTTTTGATGACATCCGAGCTTGACCAGAGC
GCTATGAACATCTTTGAAGCTCAATGTTTAGCGCAGTTACAGAAATTATT
TTATGTGGCGCCCGATGAAAGGAAAGCGGATTTGATGctcacttttaata
agaatccTGATGCTTTTAAATATATGGATTTGGTGAAGGAGCTTGAAAAT
AGTGATATGGTTGTCAAGAAAACTGAATAATGTGACTAGGGCTTTATTTT
CCTTTATATTGTATTATGTGTGTCTTAACCTAATTCtttattgttgtttt
tggattctttttgaaaataattacacCAACTAATGTCTGACGGtgaattg
taaagttttagatTCAAGAGTTCTATAGAATGGTAACCTAAAAGTACATA
AATTTTGTCAAGTAACTTGAAATACAGTTGAGTTATGTTAGCCAATAaaa
cttaaaatattcttttgttttgtctCTAGATCCGCACATTTGTTTATGAA
TTCCTCTTATTTAAACTGAGTGATACTCTTTGTTTCTTATACGGACCAGT
AATTTTTGACGATGATTGGTCACTCTTAATCAGCtcaaatctatatatta
atagtggtagtctgtatgtgtgtttgtctgtgttttctactttcgttttc
gctttgtttgtgttttaaaattatgacttttagtctcttactccacaaat
ttgttttattggattcgcgccatttgcaaaagatcggatagagcttggtt
tagactttattaagcctttgttttgaaatttaaggcccatctacatttag
taattttaacttCTGCCCAGACTtgcctttttctttcttcttttgtttta
aatgttttcgaatgtattta

Coding sequence (CDS) from alignment at scaffold_448:216438..218157

>TCONS_00066015 ID=TCONS_00066015|Name=TCONS_00066015|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_448:216438..218157 (Clytia hemisphaerica)
ATGATTTCTCGAAGATTGTTGAACTCAGTGACTTATGGACGGCTGATATC
TCGTCAACTGGCCAAACAGCGTTGCATATCAACAACAAGTGCATGGTGGA
ACAGTAAAGAAGAACAGAATGAAGATGCAGAATTAGAACATAAtccttat
tttgaaaaatacgcCGACAAGATCAAGAAGGTGCAGAATGAGGCTAAACA
ATATGGGAACAAGACGTTCCATGGTGACGCCCGGCTAAAGCGTGAGACAG
AGAGATGGAAACGTAGCATCCAATCTGTCGAggagaaattatcaaaaaaa
aagaaagagcaAGAAGATAAACGAGGTTCAAAGCTACCTTCGCGTTTAGA
TGAGCTTATCCATTTGGATCTGTTGCAATCTAAAACAGCTGATGAAATCT
CACACATCTGGAcagaacattttaaagaccagaCCGCTATCAGTGCTATC
ATTCCAGCTGAATCTTTTAAGGAAATGTCTACAAGAGCAGAAGAGTTCCC
AACCTTTTTATACCCTTTACCTAAAGAGAATGGGTACGAGTTTGTATTAT
CTCAATTCNAGAATTCCCAACCTTTTTATACCCTTTACCTAAAGAAAATG
GGTACGAGTTTGTATTATCCCAATTTGAAGGTAACAGATGCTTTTTCACT
tctttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041338XLOC_041338Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066015-proteinTCONS_00066015-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066015-exon-scaffold_448-1491911889:216438..218157TCONS_00066015-exon-scaffold_448-1491911889:216438..218157Clytia hemisphaericaexon
TCONS_00066015-exon-scaffold_448-1510915933:216438..218157TCONS_00066015-exon-scaffold_448-1510915933:216438..218157Clytia hemisphaericaexon
TCONS_00066015-exon-scaffold_448-1575043694:216438..218157TCONS_00066015-exon-scaffold_448-1575043694:216438..218157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:216438..218157 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.769	57.6145	59.5199	57.9946	16.9764	13.3968	22.8764	23.9772	28.5492	20.9061	43.5017	53.808	69.4691	81.3532	69.0403	56.873	64.9827	76.5089	53.8139	45.2935	60.1896	57.4176	43.7681	50.5437	43.5729	48.5032	40.8851	64.0285	22.6161	25.6196
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010591ATP11
Vocabulary: Biological Process
TermDefinition
GO:0006461protein complex assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006461 protein complex assembly
cellular_component GO:0005739 mitochondrion
Blast
[Close]
BLAST of TCONS_00066015 vs. Swiss-Prot (Human)
Match: ATPF1 (ATP synthase mitochondrial F1 complex assembly factor 1 OS=Homo sapiens GN=ATPAF1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.506e-16
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = -1 
Query:  662 DXAPWQFCITFYPELAEDKGVVLMTSELDQSAMNIFEAQCLAQLQKLFYVAPDERKADLMLTFNKNPDAFKYMDLVKELENSDM 913
            + A  Q  +  YPEL E+KG+VLMT+E+D + +N+ EAQC+A   +LFY    +    L+ TFN  P+ FKYM ++ ELE S +
Sbjct:  232 EAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVAEAQCIANQVQLFYATDRKETYGLVETFNLRPNEFKYMSVIAELEQSGL 315
The following BLAST results are available for this feature:
BLAST of TCONS_00066015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATPF12.506e-1644.05ATP synthase mitochondrial F1 complex assembly fac... [more]
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