|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066015 ID=TCONS_00066015|Name=TCONS_00066015|organism=Clytia hemisphaerica|type=transcript|length=1720bp taaatacattcgaaaacatttaaaacaaaagaagaaagaaaaaggcaAGT CTGGGCAGaagttaaaattactaaatgtagatgggccttaaatttcaaaa caaaggcttaataaagtctaaaccaagctctatccgatcttttgcaaatg gcgcgaatccaataaaacaaatttgtggagtaagagactaaaagtcataa ttttaaaacacaaacaaagcgaaaacgaaagtagaaaacacagacaaaca cacatacagactaccactattaatatatagatttgaGCTGATTAAGAGTG ACCAATCATCGTCAAAAATTACTGGTCCGTATAAGAAACAAAGAGTATCA CTCAGTTTAAATAAGAGGAATTCATAAACAAATGTGCGGATCTAGagaca aaacaaaagaatattttaagtttTATTGGCTAACATAACTCAACTGTATT TCAAGTTACTTGACAAAATTTATGTACTTTTAGGTTACCATTCTATAGAA CTCTTGAatctaaaactttacaattcaCCGTCAGACATTAGTTGgtgtaa ttattttcaaaaagaatccaaaaacaacaataaaGAATTAGGTTAAGACA CACATAATACAATATAAAGGAAAATAAAGCCCTAGTCACATTATTCAGTT TTCTTGACAACCATATCACTATTTTCAAGCTCCTTCACCAAATCCATATA TTTAAAAGCATCAggattcttattaaaagtgagCATCAAATCCGCTTTCC TTTCATCGGGCGCCACATAAAATAATTTCTGTAACTGCGCTAAACATTGA GCTTCAAAGATGTTCATAGCGCTCTGGTCAAGCTCGGATGTCATCAAAAC AACACCTTTGTCTTCTGCAAGCTCTGGATAAAAAGTAATGCAGAACTGCC AAGGAGCNTCATCAAAACAATGCCTTTGTCTTCTGCAAGCTCTGGATAAA AAGTAATGCAGAACTGCCAAGGAGCATTTTCACCATGTacttgaaaattg attaaagaAGTGAAAAAGCATCTGTTACCTTCAAATTGGGATAATACAAA CTCGTACCCATTTTCTTTAGGTAAAGGGTATAAAAAGGTTGGGAATTCTN GAATTGAGATAATACAAACTCGTACCCATTCTCTTTAGGTAAAGGGTATA AAAAGGTTGGGAACTCTTCTGCTCTTGTAGACATTTCCTTAAAAGATTCA GCTGGAATGATAGCACTGATAGCGGtctggtctttaaaatgttctgTCCA GATGTGTGAGATTTCATCAGCTGTTTTAGATTGCAACAGATCCAAATGGA TAAGCTCATCTAAACGCGAAGGTAGCTTTGAACCTCGTTTATCTTCTtgc tctttctttttttttgataatttctccTCGACAGATTGGATGCTACGTTT CCATCTCTCTGTCTCACGCTTTAGCCGGGCGTCACCATGGAACGTCTTGT TCCCATATTGTTTAGCCTCATTCTGCACCTTCTTGATCTTGTCGgcgtat ttttcaaaataaggaTTATGTTCTAATTCTGCATCTTCATTCTGTTCTTC TTTACTGTTCCACCATGCACTTGTTGTTGATATGCAACGCTGTTTGGCCA GTTGACGAGATATCAGCCGTCCATAAGTCACTGAGTTCAACAATCTTCGA GAAATCATTcctttttattcctttttttaaactttttttacccTGGAAAA ACATAAAAAGAGAACATTAG Run BLAST on NCBI protein sequence of TCONS_00066015-protein >TCONS_00066015-protein ID=TCONS_00066015-protein|Name=TCONS_00066015-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MISRRLLNSVTYGRLISRQLAKQRCISTTSAWWNSKEEQNEDAELEHNPY FEKYADKIKKVQNEAKQYGNKTFHGDARLKRETERWKRSIQSVEEKLSKK KKEQEDKRGSKLPSRLDELIHLDLLQSKTADEISHIWTEHFKDQTAISAI IPAESFKEMSTRAEEFPTFLYPLPKENGYEFVLSQFXNSQPFYTLYLKKM GTSLYYPNLKVTDAFSLL Run BLAST on NCBI transcript from alignment at scaffold_448:216438..218157 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066015 ID=TCONS_00066015|Name=TCONS_00066015|organism=Clytia hemisphaerica|type=transcript|length=1720bp|location=Sequence derived from alignment at scaffold_448:216438..218157 (Clytia hemisphaerica) CTAATGTTCTCTTTTTATGTTTTTCCAgggtaaaaaaagtttaaaaaaag
gaataaaaaggAATGATTTCTCGAAGATTGTTGAACTCAGTGACTTATGG
ACGGCTGATATCTCGTCAACTGGCCAAACAGCGTTGCATATCAACAACAA
GTGCATGGTGGAACAGTAAAGAAGAACAGAATGAAGATGCAGAATTAGAA
CATAAtccttattttgaaaaatacgcCGACAAGATCAAGAAGGTGCAGAA
TGAGGCTAAACAATATGGGAACAAGACGTTCCATGGTGACGCCCGGCTAA
AGCGTGAGACAGAGAGATGGAAACGTAGCATCCAATCTGTCGAggagaaa
ttatcaaaaaaaaagaaagagcaAGAAGATAAACGAGGTTCAAAGCTACC
TTCGCGTTTAGATGAGCTTATCCATTTGGATCTGTTGCAATCTAAAACAG
CTGATGAAATCTCACACATCTGGAcagaacattttaaagaccagaCCGCT
ATCAGTGCTATCATTCCAGCTGAATCTTTTAAGGAAATGTCTACAAGAGC
AGAAGAGTTCCCAACCTTTTTATACCCTTTACCTAAAGAGAATGGGTACG
AGTTTGTATTATCTCAATTCNAGAATTCCCAACCTTTTTATACCCTTTAC
CTAAAGAAAATGGGTACGAGTTTGTATTATCCCAATTTGAAGGTAACAGA
TGCTTTTTCACTtctttaatcaattttcaagtACATGGTGAAAATGCTCC
TTGGCAGTTCTGCATTACTTTTTATCCAGAGCTTGCAGAAGACAAAGGCA
TTGTTTTGATGANGCTCCTTGGCAGTTCTGCATTACTTTTTATCCAGAGC
TTGCAGAAGACAAAGGTGTTGTTTTGATGACATCCGAGCTTGACCAGAGC
GCTATGAACATCTTTGAAGCTCAATGTTTAGCGCAGTTACAGAAATTATT
TTATGTGGCGCCCGATGAAAGGAAAGCGGATTTGATGctcacttttaata
agaatccTGATGCTTTTAAATATATGGATTTGGTGAAGGAGCTTGAAAAT
AGTGATATGGTTGTCAAGAAAACTGAATAATGTGACTAGGGCTTTATTTT
CCTTTATATTGTATTATGTGTGTCTTAACCTAATTCtttattgttgtttt
tggattctttttgaaaataattacacCAACTAATGTCTGACGGtgaattg
taaagttttagatTCAAGAGTTCTATAGAATGGTAACCTAAAAGTACATA
AATTTTGTCAAGTAACTTGAAATACAGTTGAGTTATGTTAGCCAATAaaa
cttaaaatattcttttgttttgtctCTAGATCCGCACATTTGTTTATGAA
TTCCTCTTATTTAAACTGAGTGATACTCTTTGTTTCTTATACGGACCAGT
AATTTTTGACGATGATTGGTCACTCTTAATCAGCtcaaatctatatatta
atagtggtagtctgtatgtgtgtttgtctgtgttttctactttcgttttc
gctttgtttgtgttttaaaattatgacttttagtctcttactccacaaat
ttgttttattggattcgcgccatttgcaaaagatcggatagagcttggtt
tagactttattaagcctttgttttgaaatttaaggcccatctacatttag
taattttaacttCTGCCCAGACTtgcctttttctttcttcttttgtttta
aatgttttcgaatgtattta Coding sequence (CDS) from alignment at scaffold_448:216438..218157 >TCONS_00066015 ID=TCONS_00066015|Name=TCONS_00066015|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_448:216438..218157 (Clytia hemisphaerica) ATGATTTCTCGAAGATTGTTGAACTCAGTGACTTATGGACGGCTGATATC TCGTCAACTGGCCAAACAGCGTTGCATATCAACAACAAGTGCATGGTGGA ACAGTAAAGAAGAACAGAATGAAGATGCAGAATTAGAACATAAtccttat tttgaaaaatacgcCGACAAGATCAAGAAGGTGCAGAATGAGGCTAAACA ATATGGGAACAAGACGTTCCATGGTGACGCCCGGCTAAAGCGTGAGACAG AGAGATGGAAACGTAGCATCCAATCTGTCGAggagaaattatcaaaaaaa aagaaagagcaAGAAGATAAACGAGGTTCAAAGCTACCTTCGCGTTTAGA TGAGCTTATCCATTTGGATCTGTTGCAATCTAAAACAGCTGATGAAATCT CACACATCTGGAcagaacattttaaagaccagaCCGCTATCAGTGCTATC ATTCCAGCTGAATCTTTTAAGGAAATGTCTACAAGAGCAGAAGAGTTCCC AACCTTTTTATACCCTTTACCTAAAGAGAATGGGTACGAGTTTGTATTAT CTCAATTCNAGAATTCCCAACCTTTTTATACCCTTTACCTAAAGAAAATG GGTACGAGTTTGTATTATCCCAATTTGAAGGTAACAGATGCTTTTTCACT tctttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066015-exon-scaffold_448-1491911889:216438..218157 | TCONS_00066015-exon-scaffold_448-1491911889:216438..218157 | Clytia hemisphaerica | exon |
TCONS_00066015-exon-scaffold_448-1510915933:216438..218157 | TCONS_00066015-exon-scaffold_448-1510915933:216438..218157 | Clytia hemisphaerica | exon |
TCONS_00066015-exon-scaffold_448-1575043694:216438..218157 | TCONS_00066015-exon-scaffold_448-1575043694:216438..218157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_448 | supercontig | scaffold_448:216438..218157 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR010591 | ATP11 |
Vocabulary: Biological Process
Term | Definition |
GO:0006461 | protein complex assembly |
Vocabulary: Cellular Component
Term | Definition |
GO:0005739 | mitochondrion |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006461 |
protein complex assembly |
cellular_component |
GO:0005739 |
mitochondrion |
Blast
BLAST of TCONS_00066015 vs. Swiss-Prot (Human)
Match: ATPF1 (ATP synthase mitochondrial F1 complex assembly factor 1 OS=Homo sapiens GN=ATPAF1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.506e-16 Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = -1
Query: 662 DXAPWQFCITFYPELAEDKGVVLMTSELDQSAMNIFEAQCLAQLQKLFYVAPDERKADLMLTFNKNPDAFKYMDLVKELENSDM 913
+ A Q + YPEL E+KG+VLMT+E+D + +N+ EAQC+A +LFY + L+ TFN P+ FKYM ++ ELE S +
Sbjct: 232 EAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVAEAQCIANQVQLFYATDRKETYGLVETFNLRPNEFKYMSVIAELEQSGL 315
The following BLAST results are available for this feature:
|