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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065865 ID=TCONS_00065865|Name=TCONS_00065865|organism=Clytia hemisphaerica|type=transcript|length=1957bp
CACCGACTGACAGACGTCACACTAACAGTGGTAGACCTCGGGCCTTCCAG
GAACGTGACGAGAGAAGAATTTTACGCGTTGCTGAACAGCTGCGCAGTGA
GTACGGACACTTCACAATAAAACGAGTTAAACTTGCCGCTGGGATTGAGC
ATGTCTCTGACGAGACAGTACGTAAAGTTTTTCGTAAAGCAGGACTACGC
TATACTCATTCCAGAAAGAAAGGTGTATTGAAACGCATTGATCTTAAACA
ACGCTTACAGTTTGCAAAACGCTTAAAGAGAACCATGACCGCCAAACAGC
TGGAAAATCTTTGGAGACACgagatttgtttttattttgatgcagTTGGC
TTTACTCACAAATACAACCCTTTTGATCAAGCCCAGGCCCCTCGCACTAT
GGCCTGGAGGCGACCAAATGATGGACTAGACTTTGAACGTACTGCCAAGG
GTAACCATGAAGGCAGCGGGGGACGAGTCGCCCACTTCTTTTGCGCCATT
TCCCATGCCGGAGGAATGGTCCTGGCGGAACAGTATCGTGATCGTTTGAA
CGGAGACAGATTTTCTGCCTTTTTAAAAGAAGCCTTCCCCCAGTTGGGGA
CGCCCGAAAGCCGAAATTTCCTGATGGACGGTTGTCCAGTCCAAAATTGC
AAGAAGGCCAAACAAGCTATCAGTgacattaactgtgaagttttCAAAAT
AACCGCCCGAAGCCCTGACTTAAACCCCATTGAGAACACTTTTCATTCGG
TCAAAGAGCAAATGCGGGAAGAGGCCATCGTGAAACGCATTACCTTTGAG
AACTTTGATGACTTTTCCGCCCGTTGCCAGAGAACGCTGCTAAACGTTTC
CAAAGATCTGATCAAACGCACTATCGATTCGATGCCGAAAAGACTTGATG
ACATTATAAGGAGGAACGGACAGAGGACCAAATATTGACTCTCAAGGTAT
ATAATAAATTATGATATATAAACAGTAGAGTGACTTTTACTTGTTTCCAG
TACTCACAGAGGAGTTGTCCAAGTGTTTTGGTCACTTTACATCCATGTTA
CGCACATTTCACGTTTGGGTCCTAGAGAAATCACACCAAATCAGTCCATG
TCACGCCATGTCACGCATGTTACGGTGTATAAATAAAAAGTGAAGTGtta
attgttttttataaatagtGACGTAACATGTGTAACTTGACGTGAAATGT
GCTAATTTTGTATGATTTCACAGCCAAAGGCTGTGAAGTGAGCGTGAAAC
AGAAAAACCAacacaaattttcaacatcAGGGTTAAATTTCCAAACGAAA
GAGGTCTACTTAAGTGGTAGTTCACGTTACATCAGCACAAACTCTGCAAA
GCAGCGTGCACATGGTGGGATTGAAGTGTTCATTTCCTCCCGGGTTAGTC
CtctgaaaaacttgaaatactTCCAACGAATGTCCATCATTTGATTCTCC
TGATCCTCATATTTGTCCTGTTTGGGCCACCTAATCATCCCACGACTGGT
CATGAAGATAGGAATATCCCGGGTAACAACTACGTCCTTGGTCATGACGT
TCTTAGGGGCTGGGAGTTTGGTAACTTTTCCCTCCAACAAGCGCAGAAGA
TCGTCCCAGGAGATTTGATCTGGATCCCAGCGAAAATCATCAATCAAGAC
CGCTTCCTTATCCTCAATCCCCAACCAAGCAAATCTTCCCTTCGCGGGAT
TCTCAAACACCTGGAAGATATCGGTTAGAGGCTGCAACAGAAAACTTTTT
CCACAATTTGCGTCCCCTATCAACATAATATTTCTCGTTTTGCTACGACC
AAAAGTGAGGAGTGCGCGTATGGCAGAACAGAACTCGGGTCTGTCAATGT
TATTCCAAGACAGAAGCTGGAGGGCAGACTTCTTCCAAAGTTCATTTTCA
CAACCCGGGGCACACTGTTGGTTTAAAATATCATAAATGACATGCATCCT
ATCCCGG Run BLAST on NCBI protein sequence of TCONS_00065865-protein >TCONS_00065865-protein ID=TCONS_00065865-protein|Name=TCONS_00065865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
PTDRRHTNSGRPRAFQERDERRILRVAEQLRSEYGHFTIKRVKLAAGIEH
VSDETVRKVFRKAGLRYTHSRKKGVLKRIDLKQRLQFAKRLKRTMTAKQL
ENLWRHEICFYFDAVGFTHKYNPFDQAQAPRTMAWRRPNDGLDFERTAKG
NHEGSGGRVAHFFCAISHAGGMVLAEQYRDRLNGDRFSAFLKEAFPQLGT
PESRNFLMDGCPVQNCKKAKQAISDINCEVFKITARSPDLNPIENTFHSV
KEQMREEAIVKRITFENFDDFSARCQRTLLNVSKDLIKRTIDSMPKRLDD
IIRRNGQRTKY Run BLAST on NCBI transcript from alignment at scaffold_447:77784..79740 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065865 ID=TCONS_00065865|Name=TCONS_00065865|organism=Clytia hemisphaerica|type=transcript|length=1957bp|location=Sequence derived from alignment at scaffold_447:77784..79740 (Clytia hemisphaerica)
CCGGGATAGGATGCATGTCATTTATGATATTTTAAACCAACAGTGTGCCC
CGGGTTGTGAAAATGAACTTTGGAAGAAGTCTGCCCTCCAGCTTCTGTCT
TGGAATAACATTGACAGACCCGAGTTCTGTTCTGCCATACGCGCACTCCT
CACTTTTGGTCGTAGCAAAACGAGAAATATTATGTTGATAGGGGACGCAA
ATTGTGGAAAAAGTTTTCTGTTGCAGCCTCTAACCGATATCTTCCAGGTG
TTTGAGAATCCCGCGAAGGGAAGATTTGCTTGGTTGGGGATTGAGGATAA
GGAAGCGGTCTTGATTGATGATTTTCGCTGGGATCCAGATCAAATCTCCT
GGGACGATCTTCTGCGCTTGTTGGAGGGAAAAGTTACCAAACTCCCAGCC
CCTAAGAACGTCATGACCAAGGACGTAGTTGTTACCCGGGATATTCCTAT
CTTCATGACCAGTCGTGGGATGATTAGGTGGCCCAAACAGGACAAATATG
AGGATCAGGAGAATCAAATGATGGACATTCGTTGGAagtatttcaagttt
ttcagaGGACTAACCCGGGAGGAAATGAACACTTCAATCCCACCATGTGC
ACGCTGCTTTGCAGAGTTTGTGCTGATGTAACGTGAACTACCACTTAAGT
AGACCTCTTTCGTTTGGAAATTTAACCCTgatgttgaaaatttgtgtTGG
TTTTTCTGTTTCACGCTCACTTCACAGCCTTTGGCTGTGAAATCATACAA
AATTAGCACATTTCACGTCAAGTTACACATGTTACGTCactatttataaa
aaacaattaaCACTTCACTTTTTATTTATACACCGTAACATGCGTGACAT
GGCGTGACATGGACTGATTTGGTGTGATTTCTCTAGGACCCAAACGTGAA
ATGTGCGTAACATGGATGTAAAGTGACCAAAACACTTGGACAACTCCTCT
GTGAGTACTGGAAACAAGTAAAAGTCACTCTACTGTTTATATATCATAAT
TTATTATATACCTTGAGAGTCAATATTTGGTCCTCTGTCCGTTCCTCCTT
ATAATGTCATCAAGTCTTTTCGGCATCGAATCGATAGTGCGTTTGATCAG
ATCTTTGGAAACGTTTAGCAGCGTTCTCTGGCAACGGGCGGAAAAGTCAT
CAAAGTTCTCAAAGGTAATGCGTTTCACGATGGCCTCTTCCCGCATTTGC
TCTTTGACCGAATGAAAAGTGTTCTCAATGGGGTTTAAGTCAGGGCTTCG
GGCGGTTATTTTGaaaacttcacagttaatgtcACTGATAGCTTGTTTGG
CCTTCTTGCAATTTTGGACTGGACAACCGTCCATCAGGAAATTTCGGCTT
TCGGGCGTCCCCAACTGGGGGAAGGCTTCTTTTAAAAAGGCAGAAAATCT
GTCTCCGTTCAAACGATCACGATACTGTTCCGCCAGGACCATTCCTCCGG
CATGGGAAATGGCGCAAAAGAAGTGGGCGACTCGTCCCCCGCTGCCTTCA
TGGTTACCCTTGGCAGTACGTTCAAAGTCTAGTCCATCATTTGGTCGCCT
CCAGGCCATAGTGCGAGGGGCCTGGGCTTGATCAAAAGGGTTGTATTTGT
GAGTAAAGCCAActgcatcaaaataaaaacaaatctcGTGTCTCCAAAGA
TTTTCCAGCTGTTTGGCGGTCATGGTTCTCTTTAAGCGTTTTGCAAACTG
TAAGCGTTGTTTAAGATCAATGCGTTTCAATACACCTTTCTTTCTGGAAT
GAGTATAGCGTAGTCCTGCTTTACGAAAAACTTTACGTACTGTCTCGTCA
GAGACATGCTCAATCCCAGCGGCAAGTTTAACTCGTTTTATTGTGAAGTG
TCCGTACTCACTGCGCAGCTGTTCAGCAACGCGTAAAATTCTTCTCTCGT
CACGTTCCTGGAAGGCCCGAGGTCTACCACTGTTAGTGTGACGTCTGTCA
GTCGGTG Coding sequence (CDS) from alignment at scaffold_447:77784..79740 >TCONS_00065865 ID=TCONS_00065865|Name=TCONS_00065865|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_447:77784..79740 (Clytia hemisphaerica)
TCAATATTTGGTCCTCTGTCCGTTCCTCCTTATAATGTCATCAAGTCTTT
TCGGCATCGAATCGATAGTGCGTTTGATCAGATCTTTGGAAACGTTTAGC
AGCGTTCTCTGGCAACGGGCGGAAAAGTCATCAAAGTTCTCAAAGGTAAT
GCGTTTCACGATGGCCTCTTCCCGCATTTGCTCTTTGACCGAATGAAAAG
TGTTCTCAATGGGGTTTAAGTCAGGGCTTCGGGCGGTTATTTTGaaaact
tcacagttaatgtcACTGATAGCTTGTTTGGCCTTCTTGCAATTTTGGAC
TGGACAACCGTCCATCAGGAAATTTCGGCTTTCGGGCGTCCCCAACTGGG
GGAAGGCTTCTTTTAAAAAGGCAGAAAATCTGTCTCCGTTCAAACGATCA
CGATACTGTTCCGCCAGGACCATTCCTCCGGCATGGGAAATGGCGCAAAA
GAAGTGGGCGACTCGTCCCCCGCTGCCTTCATGGTTACCCTTGGCAGTAC
GTTCAAAGTCTAGTCCATCATTTGGTCGCCTCCAGGCCATAGTGCGAGGG
GCCTGGGCTTGATCAAAAGGGTTGTATTTGTGAGTAAAGCCAActgcatc
aaaataaaaacaaatctcGTGTCTCCAAAGATTTTCCAGCTGTTTGGCGG
TCATGGTTCTCTTTAAGCGTTTTGCAAACTGTAAGCGTTGTTTAAGATCA
ATGCGTTTCAATACACCTTTCTTTCTGGAATGAGTATAGCGTAGTCCTGC
TTTACGAAAAACTTTACGTACTGTCTCGTCAGAGACATGCTCAATCCCAG
CGGCAAGTTTAACTCGTTTTATTGTGAAGTGTCCGTACTCACTGCGCAGC
TGTTCAGCAACGCGTAAAATTCTTCTCTCGTCACGTTCCTGGAAGGCCCG
AGGTCTACCACTGTTAGTGTGACGTCTGTCAGTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065865-exon-scaffold_447-1491911889:77784..79740 | TCONS_00065865-exon-scaffold_447-1491911889:77784..79740 | Clytia hemisphaerica | exon |
| TCONS_00065865-exon-scaffold_447-1510915933:77784..79740 | TCONS_00065865-exon-scaffold_447-1510915933:77784..79740 | Clytia hemisphaerica | exon |
| TCONS_00065865-exon-scaffold_447-1575043694:77784..79740 | TCONS_00065865-exon-scaffold_447-1575043694:77784..79740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_447 | supercontig | scaffold_447:77784..79740 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002492 | Transposase_Tc1-like |
| IPR012337 | RNaseH-like_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
| GO:0006313 | transposition, DNA-mediated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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