TCONS_00065814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065814
Unique NameTCONS_00065814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length902

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065814 ID=TCONS_00065814|Name=TCONS_00065814|organism=Clytia hemisphaerica|type=transcript|length=902bp
TGTAGCAAAAGATATCGGGGCTAGTCACATCATCAATAATAAAAACGGTG
ACGCAACAGAAAAGATCTTAGAGATTACCGAAGGTAAAGGAGTGGATCTT
GTTGTAGAAGCTATTGGTATACCAGAAGGGTGGTACATGTGCCAAGATTC
GGTCAAATCAGGGGGTCGTATTGCTATGTTAGGCGTTCACGGAGTGCCAG
CTACTATCAATTTAGAGAAAATGTGGTACAGAAATTTCACTTTTACTGCA
GGAATGATGCATGGATTCACAATCCCATCTCTGATGTCAGCAATCCTAGA
AGGGAAATTAAACGCTGAACCTTTGATTACACACCGGCTGTATCTCTCCG
ATGTTCAAAACGCTTATACAATGTTCAAAGATGCTGGTCAATACGAAGCT
ATGAAGATAATGTTGATTAATGATCTTGATTGAGGATGGTTTGATTGGCG
TTTTCATATGGATATGATGAGGGATTTCCCAGATATGAAGAATTCCGTTT
TTGGTGGGTGGTGTTTTTGTTGCAAGTTGGCGATAAATCATGAATGAATA
TTGGAAATGACACAGAACGTTTTCTCCTTGGAAGGACTTCGAGATTCAAG
AGCTGCTGTCATTGGGTGTGGCAGCTACACCCGAAATTAAACAAAGAACA
GTTATGAAACTTAATGCTACTACGCAAAAAGAGtgcacatttttcaaaaa
aaaaattgagaactgtgttttttcattttttgaaaattgaaaaattgaaa
tttgtatattatgtttttctaaagaatttgAGTTTAATCCTACATTATCA
CTCGGTACCTAAGTACCAAActgtaaataattattttttcaagtcTCAGA
GACGTTGACCGCAATTTTTCtattataatattttataaTGGGTATGTTAA
CA
Run BLAST on NCBI

transcript from alignment at scaffold_445:36003..41102-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065814 ID=TCONS_00065814|Name=TCONS_00065814|organism=Clytia hemisphaerica|type=transcript|length=5100bp|location=Sequence derived from alignment at scaffold_445:36003..41102- (Clytia hemisphaerica)
TGTAGCAAAAGATATCGGGGCTAGTCACATCATCAATAATAAGTAAGTTG
CCTTACTTTCTTTTCTGAGGCAAATTATAGTAATATGGTTGTCAAGGAAA
CTCGTGCTAAAATTAGGAAAGTAAAAATATAACAGAACAAGAAATCTAAG
TGTTTCAAGATTTTAGAAGTGATGAAACAATAAACGAGTTTCCAGTCTAT
AACATGGTGTACAGTTTACTCCAGACTGTTAAATCATATTCTATTTCGTT
ACGTTACATAAACCCAAAAAATCGAGTTTGACCTTTCTCGCCCATCAAAT
AGAAAGATATTTCCCAATATTTTTGTTCGATGGCTCTACTTGTATCTTTT
GAANTCGGGCCTTTAATTATCACGAGTTTAGGAATTTGCATGTAAATCTC
GTTACCTTTTTTTATGTCAAACTTTATAGGTGGCAATGTTTTCACAGCTA
CAGAAGGACGTCGCTTAGGTCACGAAGGAATTGGAGAGATTGTCGAAACA
GGTTCGCAAGTCCAGAATTTCCAAGTTGGTGATCGTGTTCTAGTAGCCTG
TATCACAAACTGTGGTGAATGCCAGCACTGTCAAAATAAGTTTTATGGAC
ATTGTGAAGATGGTGGATGGCGGTTAGGGAATACAATTGATGGAATGCAA
GGACAGTATGCGCGGATTCCGCATGCGGATACAAGTTGCCATTATGTGCC
ACCACATGTTCATGACACAGAAATGGAAGGTTAGTATAAAATGTTTTTGA
TCTCTTTTTAAACTTTTAACTAAGAAGTTCCCTTTTTGCCGATCAGAATA
TGCTTTCAGAAATAACACAAGGGGGAGAGGGATAAAGCTAAAATAGTAAT
ACTTTATGTTATACTGTTACTTGATACACGTTGCTTCACCGGTGTTAAAT
TTTCAAAGATTTTTTAAAGAAAATCCTTTTTCATTAAATTAAGACACCAT
TTAAACAAAAGGATTGCCTTGATAACTGGTCTTTAGAGACACATTATGAA
ATGTTACAAATGACGTCTAATCACCTTCTTTTTCAATTCTAGACGCATTA
GTGATGTGTTCCGATATTTTGCCAACCGGTCTCGAAGTTGGATTATTAGA
TGGAGCTCTCAAACAAAACGAAAACATTGCTATCATTGGAGCTGGACCAG
TTGGTTTAGCTGCTTTGACATGCGCAGTAGGAATGTTTAATCCTCAAAAC
AGCATTGTTGTTGACGTCAACGATTTTAGACTAGATGTAGCAAAAGATAT
CGGGGCTAGTCACATCATCAATAATAAGTAAGTTGCCTTACTTTCTTTTC
TGAGGCAAATTATAGTAATATGGTTGTCAAGGAAACTCGTGCTAAAATTA
GGAAAGTAAAAATATAACAGAACAAGAAATCTAAGTGTTTCAAGATTTTA
GAAGTGATGAAACAATAAACGAGTTTCCAGTCTATAACATGGTGTACAGT
TTACTCCAGACTGTTAAATCATATTCTATTTCGTTACGTTACATAAACCC
AAAAAATCGAGTTTGACCTTTCTCGCCCATCAAATAGAAAGATATTTCCC
AATATTTTTGTTCGATGGCTCTACTTGTATCTTTTGAANCAGGCTACCAT
TTTTAAAGGGAAGAACAAACCCCCAGTTCTGGAGACAGTTTCCATGCCAA
CGATACAACAAGAGACTGATATTATCGTCAAGGTGCTCAAAACAACAATT
TGTGGAACAGACCTACATATCCTTGGTAAGTTAGAATCGATAAGAAATCA
ACCCGCCTTCCACAGTTTATAAACAGGAATTATCCATTGAAACATCGCCA
CTAAATATAGCGTGAAATCTATCGCACTGAATTAATCTAATTTTGACGCA
AAAATCACTCTCAATAATAAACTTTTGGTGGAAATTTTCTTTTTCTCGGG
CCTTTAATTATCACGAGTTTAGGAATTTGCATGTAAATCTCGTTACCTTT
TTTTATGTCAAACTTTATAGGTGGCAATGTTTTCACAGCTACAGAAGGAC
GTCGCTTAGGTCACGAAGGAATTGGAGAGATTGTCGAAACAGGTTCGCAA
GTCCAGAATTTCCAAGTTGGTGATCGTGTTCTAGTAGCCTGTATCACAAA
CTGTGGTGAATGCCAGCACTGTCAAAATAAGTTTTATGGACATTGTGAAG
ATGGTGGATGGCGGTTAGGGAATACAATTGATGGAATGCAAGGACAGTAT
GCGCGGATTCCGCATGCGGATACAAGTTGTCATTATGTGCCACCACATGT
TCATGACACAGAAATGGAAGGTTAGTATAAAATGTTTTTGATCTCTTTTT
AAACTTTTAACTAATAAGTTCCCTTTTTGCCGATCAGAATATGCTTTCAG
AAATAACACAAGGGGGAGAGGGATAAAGCTAAAATAGTAATACTTTATGT
TATACTGTTACTTGATACACGTTGCTTCACCGGTGTTAAATTTTCAAAGA
TTTTTCAAAGAAAATCCTTTTTCATTAAATTAAGACACCATTTAAACAAA
AGGATTGCCTTGATAACTGGTCTTTAGAGACACATTATGAAATGTTACAA
ATGACGTCTAATCACCTTCTTTTTCAATTCTAGACGCATTAGTGATGTGT
TCCGATATTTTGCCAACCGGTCTCGAAGTTGGATTATTAGATGGAGCTCT
CAAACAAAACGAAAACATTGCTATCATTGGAGCTGGACCAGTTGGTTTAG
CTGCTTTGACATGCGCAGTAGGAATGTTTAATCCTCAAAACAGCATTGTT
GTTGACGTCAACGATTTTAGACTGGATGTAGCAAAAGATATCGGGGCTAG
TCACATCATCAATAATAAGTAAGTTGCCTTATACATGGTTGTCAAGGAAA
CTCGTGCTAAAATTAGGAAGGTTAAAATATAACAGAACAAGAAATCTGAG
TGTTTCAAGATTTTAGAAGTGATGATACAATAAACGAGTTTCCAGTCTAT
AACATGGTGTACAGTTTACTCCAGACTGTTAAAATCATATTCTATTTCGT
TACGTTACATAAACCCAAAAAATCGAGTTTGACCTTTCTCGCCCATCAAA
CAGAAAGATATTTCCCAATATTTTTGTTCGATGGCTCTACTTGTATCTTT
TGAACTGCGCAAGCTCACACAATGAAGTTTGCTCCATCTAAAGCAATTAG
ATAGTCTTCCGCTAAATAGAAACTGTAAAAGTTTATGAAACCTTTATTAA
AGTAAAAATCTCCTAAGAAGCGTTTAGTTGGCTAAGACGAAAGAAAAGTT
TGTCTGTTTATTTGAGAGCTCTCATAATTAGAAACTATTTTTCTTCCTTT
TATTTAAGAAACGGTGACGCAACAGAAAAGATCTTAGAGATTACCGAAGG
TAAAGGAGTGGATCTTGTTGTAGAAGCTATTGGTATACCAGAAGGGTGGT
ACATGTGCCAAGATTCGGTCAAATCAGGGGGTCGTATTGCTATGTTAGGC
GTTCACGGAGTGCCAGCTACTATCAATTTAGAGAAAATGTGGTACAGAAA
TTTCACTTTTACTGCAGGTATGAACTTTTATTTATATACTATATACTAAA
TTTCACTAAATTCTCTATTTAGAGTGATCAGCTACAGCTATAGATAAGGA
TTATGCAACATAATGAATTACTAGCTCCAGTCCCCTTTCGCGTTCAAGTT
AATGAAACTCGAATTTAGATTGCAACAAAATAATCAGAATCATTGAACTG
ATCCTTACCGCCATCGAGCTTTTATCAACGAGTTTATGTATTTGCACTTT
TGAGGACGGTAAAGTGACTTTAACGATTTGGAATAAGCCGCAGTTCTGAA
CCGCAAAAACAAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGCCA
ATCAGGATGTAGTCAAATTAGAACCTTACCGTCTCCGTCGCTGAAAAACA
CACATACATAACACACTCGGTATTAGCGAATTTATGTACCTGTGGTCTTC
TAGAACGGAGACGTTAAGATTCTAATTTGTCAACATCCTGCTTACCGAGA
ACGCCTTAAGTCGGCACTTTTACCGTCCTGGATTTTGCGGGTCAACAAAG
CTGCAGGTTTTTCCACTTCAGTCCACTCCACCGTTCTCAAAAGTGCAAAT
ACTTAAACTCACTATTTTAATCATTTTGCAAAATGTCTGGTGAGTTCATA
ATTTAGTCAGGTTTAGTCTGTTATAATACACCTTTTTGACCGTAGCCACC
AATTACCGCGCGGGGATCATTTTTGTCCGCTTTATCCCACTAAAACCTCC
CAGTCCTTTTTTCGCTCCTATAGACAATAGAAAAATGCGTCAAAATAGGA
TTGGGACGGTTTTAGTGGGATAAAGTGGACAAAAATATACCCGCGCGACT
ACGGTCGAAAAGGTGTATTTAGTGTGAATTTTTGAATAAAATTTTTCTTA
GTTTGACGCGTTATATTGATTCTTTATTCGCTTTCTCCTCCTTGATCAGG
AATGATGCATGGATTCACAATCCCATCTCTGATGTCAGCAATCCTAGAAG
GGAAATTAAACGCTGAACCTTTGATTACACACCGGCTGTATCTCTCCGAT
GTTCAAAACGCTTATACAATGTTCAAAGATGCTGGTCAATACGAAGCTAT
GAAGATAATGTTGATTAATGATCTTGATTGAGGATGGTTTGATTGGCGTT
TTCATATGGATATGATGAGGGATTTCCCAGATATGAAGAATTCCGTTTTT
GGTGGGTGGTGTTTTTGTTGCAAGTTGGCGATAAATCATGAATGAATATT
GGAAATGACACAGAACGTTTTCTCCTTGGAAGGACTTCGAGATTCAAGAG
CTGCTGTCATTGGGTGTGGCAGCTACACCCGAAATTAAACAAAGAACAGT
TATGAAACTTAATGCTACTACGCAAAAAGAGTGCACATTTTTCAAAAAAA
AAATTGAGAACTGTGTTTTTTCATTTTTTGAAAATTGAAAAATTGAAATT
TGTATATTATGTTTTTCTAAAGAATTTGAGTTTAATCCTACATTATCACT
CGGTACCTAAGTACCAAACTGTAAATAATTATTTTTTCAAGTCTCAGAGA
CGTTGACCGCAATTTTTCTATTATAATATTTTATAATGGGTATGTTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041230XLOC_041230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065814-exon-scaffold_445-1575043694:41061..41102TCONS_00065814-exon-scaffold_445-1575043694:41061..41102Clytia hemisphaericaexon
TCONS_00065814-exon-scaffold_445-1575043694:37586..37794TCONS_00065814-exon-scaffold_445-1575043694:37586..37794Clytia hemisphaericaexon
TCONS_00065814-exon-scaffold_445-1575043694:36003..36653TCONS_00065814-exon-scaffold_445-1575043694:36003..36653Clytia hemisphaericaexon
TCONS_00065814-exon-scaffold_445-1510915933:41061..41102TCONS_00065814-exon-scaffold_445-1510915933:41061..41102Clytia hemisphaericaexon
TCONS_00065814-exon-scaffold_445-1510915933:37586..37794TCONS_00065814-exon-scaffold_445-1510915933:37586..37794Clytia hemisphaericaexon
TCONS_00065814-exon-scaffold_445-1510915933:36003..36653TCONS_00065814-exon-scaffold_445-1510915933:36003..36653Clytia hemisphaericaexon
TCONS_00065814-exon-scaffold_445-1491911889:41061..41102TCONS_00065814-exon-scaffold_445-1491911889:41061..41102Clytia hemisphaericaexon
TCONS_00065814-exon-scaffold_445-1491911889:37586..37794TCONS_00065814-exon-scaffold_445-1491911889:37586..37794Clytia hemisphaericaexon
TCONS_00065814-exon-scaffold_445-1491911889:36003..36653TCONS_00065814-exon-scaffold_445-1491911889:36003..36653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_445supercontigscaffold_445:36003..41102 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0998453	2.86704e-06	0.0567097	0	0	0.190295	0.492948	0.351654	0.199855	0	0	0.0340478	0	0	0	0	0	0	0	0	0	0	0.0337156	3.08098	2.98627	0	0	0.0506396	0.173677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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