XLOC_041230 (gene) - C. hemisphaerica

Overview
NameXLOC_041230
Unique NameXLOC_041230
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_445:34512..43167-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041230 ID=XLOC_041230|Name=XLOC_041230|organism=Clytia hemisphaerica|type=gene|length=8656bp|location=Sequence derived from alignment at scaffold_445:34512..43167- (Clytia hemisphaerica)
AGCAACCAGACGAACAGAACAGTCAGCAAATCAACTCACTCCAATAAGGT
ACCAGTTGGTTTATCAATCAAGAAAACACACTGCAACGACCAAAGAACGA
TAAATTCAACGCGAAGATGCTACGAAAAATTTGTGAACGAGACATACTCG
TTGTTTCTAAGATATTTAAAAGACCACTACACGAGGAATGCAGAAAATGT
GCGAAAAATATCCAAAGATGCTCGACATNCTTTAAAAGACCATTACACAA
GGAATGCAGCAAATGTACGAAAAATATCCAAAGATGCTCGACATTTGGTA
GCAATCATCGAAATCATCAGGTAATTTCCATAAGAATTTTACTAGATATC
TATCTACGTGAACACTCTTTTACTACATTGTAGAAACTACTCTTAAGGGA
TTTACTTTAATGACATTGGCATGGTTTCTACATGGTGGCAAAAGATGTGT
GCAATTGAAACGAATGGTCTTTAGTTTTCTGTAAGGATGAATGTTTTGAA
TTTTGGGTTCACCGGGGTAAAAAGCGAAATTGATATTTTTGAAGAATAGC
TCAAGTTGTTTTTCTTTTGTAGGCAACAGACATTCAAGCTCTAAAACAAA
AACAGAACGCAAGAATTGAATCTTCAAAGCAACAAGTTCGTCGCTTTTCA
ACATCTGGTAACAACATGCCACCAAAAATCTTCAACCGATTTAATACATT
TGAATCTCAGCAAAGACGTTTCAAAAGTACCACAACAACCACCCTGCCCA
AAAGTGGCGTTGTTACAAAAAACGCCCGTCGATCAGTATCGACTGGTGAA
AATTCAAAAGCCACTGCCGCCCTTATGGAAAAAGATATCTACTATGATGT
TCCACCTGTTGAGGTACCAAGCCACATTCAGGCTACCATTTTTAAAGGGA
AGAACAAACCCCCAGTTCTGGAGACAGTTTCCATGCCAACGATACAACAA
GAGACTGATATTATCGTCAAGGTGCTCAAAACAACAATTTGTGGAACAGA
CCTACATATCCTTGGTAAGTTAGAATCGATAAGAAATCAACCCGCCTTCC
ACAGTTTATAAACAGGAATTATCCATTGAAACATCGCCACTAAATATAGC
GTGAAATCTATCGCACTGAATTAATCTAATTTTGACGCAAAAATCACTCT
CAATAATAAACTTTTGGTGGAAATTTTCTTTTTCTCGGGCCTTTAATTAT
CACGAGTTTAGGAATTTGCATGTAAATCTCGTTACCTTTTTTTATGTCAA
ACTTTATAGGTGGTAATGTTTTCACAGCTACAGAGGGACGTCGCTTAGGT
CACGAAGGAATTGGAGAGATCGTCGAAACAGGTTCGCAAGTTCAGAATTT
CCAAGTTGGCGATCGTGTTTTAGTAGCCTGTATCACAAACTGTGGTGAAT
GCCAGCACTGTCAAAATAAGTTTTATGGACATTGTGAAGATGGTGGATGG
CGGTTAGGGAATACAATTGATGGAATGCAAGGACAGTATGCGCGGATTCC
GCATGCGGATACAAGTTGTCATTATGTGCCACCACATGTTCATGACACAG
AAATGGAAGGTTAGTATAAAATGTTTTTGATCTCTTTTTAAACTTTTAAC
TAATAAGTTCCCTTTTTGCCGATCAGAATATGCTTTCAGAAATAACACAA
GGGGGAGAGGGATAAAGCTAAAATAGTAATACTTTATGTTATACTGTTAC
TTGATACACGTTGCTTCACCGGTGTTAAATTTTCAAAGATTTTTTAAAGA
AAATCCTTTTTCATTAAATTAAGACACCATTTAAACAAAAGGATTGCCTT
GATAACTGGTCTTTAGAGACACATTATGAAATGTTACAAATGACGTCTAA
TCACCTTCTTTTTCAATTCTAGACGCATTAGTGATGTGTTCCGATATTTT
GCCAACCGGTCTCGAAGTTGGATTATTAGATGGAGCTCTCAAACAAAACG
AAAACATTGCTATCATTGGAGCTGGACCAGTTGGTTTAGCTGCTTTGACA
TGCGCAGTAGGAATGTTTAATCCTCAAAACAGCATTGTTGTTGACGTCAA
CGATTTTAGACTAGATGTAGCAAAAGATATCGGGGCTAGTCACATCATCA
ATAATAAGTAAGTTGCCTTACTTTCTTTTCTGAGGCAAATTATAGTAATA
TGGTTGTCAAGGAAACTCGTGCTAAAATTAGGAAAGTAAAAATATAACAG
AACAAGAAATCTAAGTGTTTCAAGATTTTAGAAGTGATGAAACAATAAAC
GAGTTTCCAGTCTATAACATGGTGTACAGTTTACTCCAGACTGTTAAATC
ATATTCTATTTCGTTACGTTACATAAACCCAAAAAATCGAGTTTGACCTT
TCTCGCCCATCAAATAGAAAGATATTTCCCAATATTTTTGTTCGATGGCT
CTACTTGTATCTTTTGAANTCGGGCCTTTAATTATCACGAGTTTAGGAAT
TTGCATGTAAATCTCGTTACCTTTTTTTATGTCAAACTTTATAGGTGGCA
ATGTTTTCACAGCTACAGAAGGACGTCGCTTAGGTCACGAAGGAATTGGA
GAGATTGTCGAAACAGGTTCGCAAGTCCAGAATTTCCAAGTTGGTGATCG
TGTTCTAGTAGCCTGTATCACAAACTGTGGTGAATGCCAGCACTGTCAAA
ATAAGTTTTATGGACATTGTGAAGATGGTGGATGGCGGTTAGGGAATACA
ATTGATGGAATGCAAGGACAGTATGCGCGGATTCCGCATGCGGATACAAG
TTGCCATTATGTGCCACCACATGTTCATGACACAGAAATGGAAGGTTAGT
ATAAAATGTTTTTGATCTCTTTTTAAACTTTTAACTAAGAAGTTCCCTTT
TTGCCGATCAGAATATGCTTTCAGAAATAACACAAGGGGGAGAGGGATAA
AGCTAAAATAGTAATACTTTATGTTATACTGTTACTTGATACACGTTGCT
TCACCGGTGTTAAATTTTCAAAGATTTTTTAAAGAAAATCCTTTTTCATT
AAATTAAGACACCATTTAAACAAAAGGATTGCCTTGATAACTGGTCTTTA
GAGACACATTATGAAATGTTACAAATGACGTCTAATCACCTTCTTTTTCA
ATTCTAGACGCATTAGTGATGTGTTCCGATATTTTGCCAACCGGTCTCGA
AGTTGGATTATTAGATGGAGCTCTCAAACAAAACGAAAACATTGCTATCA
TTGGAGCTGGACCAGTTGGTTTAGCTGCTTTGACATGCGCAGTAGGAATG
TTTAATCCTCAAAACAGCATTGTTGTTGACGTCAACGATTTTAGACTAGA
TGTAGCAAAAGATATCGGGGCTAGTCACATCATCAATAATAAGTAAGTTG
CCTTACTTTCTTTTCTGAGGCAAATTATAGTAATATGGTTGTCAAGGAAA
CTCGTGCTAAAATTAGGAAAGTAAAAATATAACAGAACAAGAAATCTAAG
TGTTTCAAGATTTTAGAAGTGATGAAACAATAAACGAGTTTCCAGTCTAT
AACATGGTGTACAGTTTACTCCAGACTGTTAAATCATATTCTATTTCGTT
ACGTTACATAAACCCAAAAAATCGAGTTTGACCTTTCTCGCCCATCAAAT
AGAAAGATATTTCCCAATATTTTTGTTCGATGGCTCTACTTGTATCTTTT
GAANCAGGCTACCATTTTTAAAGGGAAGAACAAACCCCCAGTTCTGGAGA
CAGTTTCCATGCCAACGATACAACAAGAGACTGATATTATCGTCAAGGTG
CTCAAAACAACAATTTGTGGAACAGACCTACATATCCTTGGTAAGTTAGA
ATCGATAAGAAATCAACCCGCCTTCCACAGTTTATAAACAGGAATTATCC
ATTGAAACATCGCCACTAAATATAGCGTGAAATCTATCGCACTGAATTAA
TCTAATTTTGACGCAAAAATCACTCTCAATAATAAACTTTTGGTGGAAAT
TTTCTTTTTCTCGGGCCTTTAATTATCACGAGTTTAGGAATTTGCATGTA
AATCTCGTTACCTTTTTTTATGTCAAACTTTATAGGTGGCAATGTTTTCA
CAGCTACAGAAGGACGTCGCTTAGGTCACGAAGGAATTGGAGAGATTGTC
GAAACAGGTTCGCAAGTCCAGAATTTCCAAGTTGGTGATCGTGTTCTAGT
AGCCTGTATCACAAACTGTGGTGAATGCCAGCACTGTCAAAATAAGTTTT
ATGGACATTGTGAAGATGGTGGATGGCGGTTAGGGAATACAATTGATGGA
ATGCAAGGACAGTATGCGCGGATTCCGCATGCGGATACAAGTTGTCATTA
TGTGCCACCACATGTTCATGACACAGAAATGGAAGGTTAGTATAAAATGT
TTTTGATCTCTTTTTAAACTTTTAACTAATAAGTTCCCTTTTTGCCGATC
AGAATATGCTTTCAGAAATAACACAAGGGGGAGAGGGATAAAGCTAAAAT
AGTAATACTTTATGTTATACTGTTACTTGATACACGTTGCTTCACCGGTG
TTAAATTTTCAAAGATTTTTCAAAGAAAATCCTTTTTCATTAAATTAAGA
CACCATTTAAACAAAAGGATTGCCTTGATAACTGGTCTTTAGAGACACAT
TATGAAATGTTACAAATGACGTCTAATCACCTTCTTTTTCAATTCTAGAC
GCATTAGTGATGTGTTCCGATATTTTGCCAACCGGTCTCGAAGTTGGATT
ATTAGATGGAGCTCTCAAACAAAACGAAAACATTGCTATCATTGGAGCTG
GACCAGTTGGTTTAGCTGCTTTGACATGCGCAGTAGGAATGTTTAATCCT
CAAAACAGCATTGTTGTTGACGTCAACGATTTTAGACTGGATGTAGCAAA
AGATATCGGGGCTAGTCACATCATCAATAATAAGTAAGTTGCCTTATACA
TGGTTGTCAAGGAAACTCGTGCTAAAATTAGGAAGGTTAAAATATAACAG
AACAAGAAATCTGAGTGTTTCAAGATTTTAGAAGTGATGATACAATAAAC
GAGTTTCCAGTCTATAACATGGTGTACAGTTTACTCCAGACTGTTAAAAT
CATATTCTATTTCGTTACGTTACATAAACCCAAAAAATCGAGTTTGACCT
TTCTCGCCCATCAAACAGAAAGATATTTCCCAATATTTTTGTTCGATGGC
TCTACTTGTATCTTTTGAACTGCGCAAGCTCACACAATGAAGTTTGCTCC
ATCTAAAGCAATTAGATAGTCTTCCGCTAAATAGAAACTGTAAAAGTTTA
TGAAACCTTTATTAAAGTAAAAATCTCCTAAGAAGCGTTTAGTTGGCTAA
GACGAAAGAAAAGTTTGTCTGTTTATTTGAGAGCTCTCATAATTAGAAAC
TATTTTTCTTCCTTTTATTTAAGAAACGGTGACGCAACAGAAAAGATCTT
AGAGATTACCGAAGGTAAAGGAGTGGATCTTGTTGTAGAAGCTATTGGTA
TACCAGAAGGGTGGTACATGTGCCAAGATTCGGTCAAATCAGGGGGTCGT
ATTGCTATGTTAGGCGTTCACGGAGTGCCAGCTACTATCAATTTAGAGAA
AATGTGGTACAGAAATTTCACTTTTACTGCAGGTATGAACTTTTATTTAT
ATACTATATACTAAATTTCACTAAATTCTCTATTTAGAGTGATCAGCTAC
AGCTATAGATAAGGATTATGCAACATAATGAATTACTAGCTCCAGTCCCC
TTTCGCGTTCAAGTTAATGAAACTCGAATTTAGATTGCAACAAAATAATC
AGAATCATTGAACTGATCCTTACCGCCATCGAGCTTTTATCAACGAGTTT
ATGTATTTGCACTTTTGAGGACGGTAAAGTGACTTTAACGATTTGGAATA
AGCCGCAGTTCTGAACCGCAAAAACAAGGACGGTAAAAGTGCTGATTTAC
CGTCGTCCTCAGCCAATCAGGATGTAGTCAAATTAGAACCTTACCGTCTC
CGTCGCTGAAAAACACACATACATAACACACTCGGTATTAGCGAATTTAT
GTACCTGTGGTCTTCTAGAACGGAGACGTTAAGATTCTAATTTGTCAACA
TCCTGCTTACCGAGAACGCCTTAAGTCGGCACTTTTACCGTCCTGGATTT
TGCGGGTCAACAAAGCTGCAGGTTTTTCCACTTCAGTCCACTCCACCGTT
CTCAAAAGTGCAAATACTTAAACTCACTATTTTAATCATTTTGCAAAATG
TCTGGTGAGTTCATAATTTAGTCAGGTTTAGTCTGTTATAATACACCTTT
TTGACCGTAGCCACCAATTACCGCGCGGGGATCATTTTTGTCCGCTTTAT
CCCACTAAAACCTCCCAGTCCTTTTTTCGCTCCTATAGACAATAGAAAAA
TGCGTCAAAATAGGATTGGGACGGTTTTAGTGGGATAAAGTGGACAAAAA
TATACCCGCGCGACTACGGTCGAAAAGGTGTATTTAGTGTGAATTTTTGA
ATAAAATTTTTCTTAGTTTGACGCGTTATATTGATTCTTTATTCGCTTTC
TCCTCCTTGATCAGGAATGATGCATGGATTCACAATCCCATCTCTGATGT
CAGCAATCCTAGAAGGGAAATTAAACGCTGAACCTTTGATTACACACCGG
CTGTATCTCTCCGATGTTCAAAACGCTTATACAATGTTCAAAGATGCTGG
TCAATACGAAGCTATGAAGATAATGTTGATTAATGATCTTGATTGAGGAT
GGTTTGATTGGCGTTTTCATATGGATATGATGAGGGATTTCCCAGATATG
AAGAATTCCGTTTTTGGTGGGTGGTGTTTTTGTTGCAAGTTGGCGATAAA
TCATGAATGAATATTGGAAATGACACAGAACGTTTTCTCCTTGGAAGGAC
TTCGAGATTCAAGAGCTGCTGTCATTGGGTGTGGCAGCTACACCCGAAAT
TAAACAAAGAACAGTTATGAAACTTAATGCTACTACGCAAAAAGAGTGCA
CATTTTTCAAAAAAAAAATTGAGAACTGTGTTTTTTCATTTTTTGAAAAT
TGAAAAATTGAAATTTGTATATTATGTTTTTCTAAAGAATTTGAGTTTAA
TCCTACATTATCACTCGGTACCTAAGTACCAAACTGTAAATAATTATTTT
TTCAAGTCTCAGAGACGTTGACCGCAATTTTTCTATTATAATATTTTATA
ATGGGTATGTTAACAGAAATTGTAATTTGTAATTGTAATGCCCTTATAAC
GTTTAAAACGATGTATAAAATATTATGTATTTTACCTAGAAATTCATAGT
GTGATGCTCAATCAATGATTAACCCGATTCCCGCCATAAAATACGCTTTC
GAAATAGAGCCCTTACAGTGTAGTTTGATNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTAAATCA
GCACTTTTACCGTCCTCGATTTTGCGGGGCGGAACTGCGGGTTATTCCAA
ATCGCTTCAGTCACTCCGCCGTCCTCAAAAGTGCAAATATTTAAGCTCAC
TATTTTAATAATTTTGCGAAATGTCTGGTGAGTTCATAATTTAGTCAGGT
TTAGTCTGTTATAATACACCTTTTTGACCGTAGCCACCAATTGCTGCGTG
GGCATTTTTTTGTCCGCTTTATCCCACTAAAACCTCCCAGTCCTTTTTTC
GCACCTATATAGAAAAATGCGTCAAAATAGGATTGGGACGGATAAAGCGG
ACAAAAAAATGCCTGCGCGACTACGGTCAAATACACCTTATTCAGTGTGA
ATTTTCGAATGAAATTTTCCTTAATTTGACGTGTTATATTGATTCTTTAT
TGGCTTTCTCCTCCTTGATCAGGAATGATGCATGGATTCACAATCCCATC
TCTGATGTCAGCAATCCTAGAAGGGAAATTAAACGCTGAACCTTTGATTA
CACACC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065815TCONS_00065815Clytia hemisphaericatranscript
TCONS_00065814TCONS_00065814Clytia hemisphaericatranscript
TCONS_00065813TCONS_00065813Clytia hemisphaericatranscript
TCONS_00065812TCONS_00065812Clytia hemisphaericatranscript
TCONS_00065811TCONS_00065811Clytia hemisphaericatranscript
TCONS_00065810TCONS_00065810Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065815-proteinTCONS_00065815-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_445supercontigscaffold_445:34512..43167 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.05	0.1	0.06	0.06	0.07	0	0.26	0.49	1.3	0.48	1.13	0.5	0.03	0	0	0.02	0.04	0.02	0	0	0.36	0.18	0.12	0.11	13.04	22.82	0	0	0.11	0.17