TCONS_00065813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065813
Unique NameTCONS_00065813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065813 ID=TCONS_00065813|Name=TCONS_00065813|organism=Clytia hemisphaerica|type=transcript|length=1527bp
CTACCATTTTTAAAGGGAAGAACAAACCCCCAGTTCTGGAGACAGTTTCC
ATGCCAACGATACAACAAGAGACTGATATTATCGTCAAGGtgctcaaaac
aacaatttgtGGAACAGACCTACATATCCTTGGTGGCAATGTTTTCACAG
CTACAGAAGGACGTCGCTTAGGTCACGAAGGAATTGGAGAGATTGTCGAA
ACAGGTTCGCAAGTCCAGAATTTCCAAGTTGGTGATCGTGTTCTAGTAGC
CTGTATCACAAACTGTGGTGAATGCCAGCACTGTCAAAATAAGTTTTATG
GACATTGTGAAGATGGTGGATGGCGGTTAGGGAATACAATTGATGGAATG
CAAGGACAGTATGCGCGGATTCCGCATGCGGATACAAGTTGTCATTATGT
GCCACCACATGTTCATGACACAGAAATGGAAGACGCATTAGTGATGTGTT
CCGATATTTTGCCAACCGGTCTCGAAGTTGGATTATTAGATGGAGCTCTC
AAACAAAACGAAAACATTGCTATCATTGGAGCTGGACCAGTTGGTTTAGC
TGCTTTGACATGCGCAGTAGGAATGTTTAATCCTCAAAACAGCATTGTTG
TTGACGTCAACGATTTTAGACTGGATGTAGCAAAAGATATCGGGGCTAGT
CACATCATCAATAATAAAAACGGTGACGCAACAGAAAAGATCTTAGAGAT
TACCGAAGGTAAAGGAGTGGATCTTGTTGTAGAAGCTATTGGTATACCAG
AAGGGTGGTACATGTGCCAAGATTCGGTCAAATCAGGGGGTCGTATTGCT
ATGTTAGGCGTTCACGGAGTGCCAGCTACTATCAATTTAGAGAAAATGTG
GTACAGAAATTTCACTTTTACTGCAGGAATGATGCATGGATTCACAATCC
CATCTCTGATGTCAGCAATCCTAGAAGGGAAATTAAACGCTGAACCTTTG
ATTACACACCGGCTGTATCTCTCCGATGTTCAAAACGCTTATACAATGTT
CAAAGATGCTGGTCAATACGAAGCTATGAAGATAATGTTGATTAATGATC
TTGATTGAGGATGGTTTGATTGGCGTTTTCATATGGATATGATGAGGGAT
TTCCCAGATATGAAGAATTCCGTTTTTGGTGGGTGGTGTTTTTGTTGCAA
GTTGGCGATAAATCATGAATGAATATTGGAAATGACACAGAACGTTTTCT
CCTTGGAAGGACTTCGAGATTCAAGAGCTGCTGTCATTGGGTGTGGCAGC
TACACCCGAAATTAAACAAAGAACAGTTATGAAACTTAATGCTACTACGC
AAAAAGAGtgcacatttttcaaaaaaaaaattgagaactgtgttttttca
ttttttgaaaattgaaaaattgaaatttgtatattatgtttttctaaaga
atttgAGTTTAATCCTACATTATCACTCGGTACCTAAGTACCAAActgta
aataattattttttcaagtcTCAGAGACGTTGACCGCAATTTTTCtatta
taatattttataaTGGGTATGTTAACA
Run BLAST on NCBI

transcript from alignment at scaffold_445:36003..39509-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065813 ID=TCONS_00065813|Name=TCONS_00065813|organism=Clytia hemisphaerica|type=transcript|length=3507bp|location=Sequence derived from alignment at scaffold_445:36003..39509- (Clytia hemisphaerica)
CTACCATTTTTAAAGGGAAGAACAAACCCCCAGTTCTGGAGACAGTTTCC
ATGCCAACGATACAACAAGAGACTGATATTATCGTCAAGGTGCTCAAAAC
AACAATTTGTGGAACAGACCTACATATCCTTGGTAAGTTAGAATCGATAA
GAAATCAACCCGCCTTCCACAGTTTATAAACAGGAATTATCCATTGAAAC
ATCGCCACTAAATATAGCGTGAAATCTATCGCACTGAATTAATCTAATTT
TGACGCAAAAATCACTCTCAATAATAAACTTTTGGTGGAAATTTTCTTTT
TCTCGGGCCTTTAATTATCACGAGTTTAGGAATTTGCATGTAAATCTCGT
TACCTTTTTTTATGTCAAACTTTATAGGTGGCAATGTTTTCACAGCTACA
GAAGGACGTCGCTTAGGTCACGAAGGAATTGGAGAGATTGTCGAAACAGG
TTCGCAAGTCCAGAATTTCCAAGTTGGTGATCGTGTTCTAGTAGCCTGTA
TCACAAACTGTGGTGAATGCCAGCACTGTCAAAATAAGTTTTATGGACAT
TGTGAAGATGGTGGATGGCGGTTAGGGAATACAATTGATGGAATGCAAGG
ACAGTATGCGCGGATTCCGCATGCGGATACAAGTTGTCATTATGTGCCAC
CACATGTTCATGACACAGAAATGGAAGGTTAGTATAAAATGTTTTTGATC
TCTTTTTAAACTTTTAACTAATAAGTTCCCTTTTTGCCGATCAGAATATG
CTTTCAGAAATAACACAAGGGGGAGAGGGATAAAGCTAAAATAGTAATAC
TTTATGTTATACTGTTACTTGATACACGTTGCTTCACCGGTGTTAAATTT
TCAAAGATTTTTCAAAGAAAATCCTTTTTCATTAAATTAAGACACCATTT
AAACAAAAGGATTGCCTTGATAACTGGTCTTTAGAGACACATTATGAAAT
GTTACAAATGACGTCTAATCACCTTCTTTTTCAATTCTAGACGCATTAGT
GATGTGTTCCGATATTTTGCCAACCGGTCTCGAAGTTGGATTATTAGATG
GAGCTCTCAAACAAAACGAAAACATTGCTATCATTGGAGCTGGACCAGTT
GGTTTAGCTGCTTTGACATGCGCAGTAGGAATGTTTAATCCTCAAAACAG
CATTGTTGTTGACGTCAACGATTTTAGACTGGATGTAGCAAAAGATATCG
GGGCTAGTCACATCATCAATAATAAGTAAGTTGCCTTATACATGGTTGTC
AAGGAAACTCGTGCTAAAATTAGGAAGGTTAAAATATAACAGAACAAGAA
ATCTGAGTGTTTCAAGATTTTAGAAGTGATGATACAATAAACGAGTTTCC
AGTCTATAACATGGTGTACAGTTTACTCCAGACTGTTAAAATCATATTCT
ATTTCGTTACGTTACATAAACCCAAAAAATCGAGTTTGACCTTTCTCGCC
CATCAAACAGAAAGATATTTCCCAATATTTTTGTTCGATGGCTCTACTTG
TATCTTTTGAACTGCGCAAGCTCACACAATGAAGTTTGCTCCATCTAAAG
CAATTAGATAGTCTTCCGCTAAATAGAAACTGTAAAAGTTTATGAAACCT
TTATTAAAGTAAAAATCTCCTAAGAAGCGTTTAGTTGGCTAAGACGAAAG
AAAAGTTTGTCTGTTTATTTGAGAGCTCTCATAATTAGAAACTATTTTTC
TTCCTTTTATTTAAGAAACGGTGACGCAACAGAAAAGATCTTAGAGATTA
CCGAAGGTAAAGGAGTGGATCTTGTTGTAGAAGCTATTGGTATACCAGAA
GGGTGGTACATGTGCCAAGATTCGGTCAAATCAGGGGGTCGTATTGCTAT
GTTAGGCGTTCACGGAGTGCCAGCTACTATCAATTTAGAGAAAATGTGGT
ACAGAAATTTCACTTTTACTGCAGGTATGAACTTTTATTTATATACTATA
TACTAAATTTCACTAAATTCTCTATTTAGAGTGATCAGCTACAGCTATAG
ATAAGGATTATGCAACATAATGAATTACTAGCTCCAGTCCCCTTTCGCGT
TCAAGTTAATGAAACTCGAATTTAGATTGCAACAAAATAATCAGAATCAT
TGAACTGATCCTTACCGCCATCGAGCTTTTATCAACGAGTTTATGTATTT
GCACTTTTGAGGACGGTAAAGTGACTTTAACGATTTGGAATAAGCCGCAG
TTCTGAACCGCAAAAACAAGGACGGTAAAAGTGCTGATTTACCGTCGTCC
TCAGCCAATCAGGATGTAGTCAAATTAGAACCTTACCGTCTCCGTCGCTG
AAAAACACACATACATAACACACTCGGTATTAGCGAATTTATGTACCTGT
GGTCTTCTAGAACGGAGACGTTAAGATTCTAATTTGTCAACATCCTGCTT
ACCGAGAACGCCTTAAGTCGGCACTTTTACCGTCCTGGATTTTGCGGGTC
AACAAAGCTGCAGGTTTTTCCACTTCAGTCCACTCCACCGTTCTCAAAAG
TGCAAATACTTAAACTCACTATTTTAATCATTTTGCAAAATGTCTGGTGA
GTTCATAATTTAGTCAGGTTTAGTCTGTTATAATACACCTTTTTGACCGT
AGCCACCAATTACCGCGCGGGGATCATTTTTGTCCGCTTTATCCCACTAA
AACCTCCCAGTCCTTTTTTCGCTCCTATAGACAATAGAAAAATGCGTCAA
AATAGGATTGGGACGGTTTTAGTGGGATAAAGTGGACAAAAATATACCCG
CGCGACTACGGTCGAAAAGGTGTATTTAGTGTGAATTTTTGAATAAAATT
TTTCTTAGTTTGACGCGTTATATTGATTCTTTATTCGCTTTCTCCTCCTT
GATCAGGAATGATGCATGGATTCACAATCCCATCTCTGATGTCAGCAATC
CTAGAAGGGAAATTAAACGCTGAACCTTTGATTACACACCGGCTGTATCT
CTCCGATGTTCAAAACGCTTATACAATGTTCAAAGATGCTGGTCAATACG
AAGCTATGAAGATAATGTTGATTAATGATCTTGATTGAGGATGGTTTGAT
TGGCGTTTTCATATGGATATGATGAGGGATTTCCCAGATATGAAGAATTC
CGTTTTTGGTGGGTGGTGTTTTTGTTGCAAGTTGGCGATAAATCATGAAT
GAATATTGGAAATGACACAGAACGTTTTCTCCTTGGAAGGACTTCGAGAT
TCAAGAGCTGCTGTCATTGGGTGTGGCAGCTACACCCGAAATTAAACAAA
GAACAGTTATGAAACTTAATGCTACTACGCAAAAAGAGTGCACATTTTTC
AAAAAAAAAATTGAGAACTGTGTTTTTTCATTTTTTGAAAATTGAAAAAT
TGAAATTTGTATATTATGTTTTTCTAAAGAATTTGAGTTTAATCCTACAT
TATCACTCGGTACCTAAGTACCAAACTGTAAATAATTATTTTTTCAAGTC
TCAGAGACGTTGACCGCAATTTTTCTATTATAATATTTTATAATGGGTAT
GTTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041230XLOC_041230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065813-exon-scaffold_445-1575043694:39378..39509TCONS_00065813-exon-scaffold_445-1575043694:39378..39509Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1575043694:38833..39132TCONS_00065813-exon-scaffold_445-1575043694:38833..39132Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1575043694:38285..38519TCONS_00065813-exon-scaffold_445-1575043694:38285..38519Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1575043694:37586..37794TCONS_00065813-exon-scaffold_445-1575043694:37586..37794Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1575043694:36003..36653TCONS_00065813-exon-scaffold_445-1575043694:36003..36653Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1510915933:39378..39509TCONS_00065813-exon-scaffold_445-1510915933:39378..39509Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1510915933:38833..39132TCONS_00065813-exon-scaffold_445-1510915933:38833..39132Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1510915933:38285..38519TCONS_00065813-exon-scaffold_445-1510915933:38285..38519Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1510915933:37586..37794TCONS_00065813-exon-scaffold_445-1510915933:37586..37794Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1510915933:36003..36653TCONS_00065813-exon-scaffold_445-1510915933:36003..36653Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1491911889:39378..39509TCONS_00065813-exon-scaffold_445-1491911889:39378..39509Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1491911889:38833..39132TCONS_00065813-exon-scaffold_445-1491911889:38833..39132Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1491911889:38285..38519TCONS_00065813-exon-scaffold_445-1491911889:38285..38519Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1491911889:37586..37794TCONS_00065813-exon-scaffold_445-1491911889:37586..37794Clytia hemisphaericaexon
TCONS_00065813-exon-scaffold_445-1491911889:36003..36653TCONS_00065813-exon-scaffold_445-1491911889:36003..36653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_445supercontigscaffold_445:36003..39509 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0729796	0	0.0407408	0.161182	0	0.191765	0	0	0	0.016403	0.0404143	0.0207117	0	0	0.199725	0	0.123454	0	4.21777e-05	0	0	0	0.063004	0
Blast
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BLAST of TCONS_00065813 vs. Swiss-Prot (Human)
Match: ADH6 (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.427e-19
Identity = 86/344 (25.00%), Postives = 142/344 (41.28%), Query Frame = 3 
Query:   66 QETDIIVKVLKTTICGTDLHILGGNVFTATEGRRLGHEGIGEIVETGSQVQNFQVGDRVLVACITNCGECQHCQNKFYGHC-----------EDGGWRLGNTIDGMQGQYARIPHADTSCHYVPPHVHDTEMEDALVMCSDI------LPTGLEVGLLDGALKQNENIAIIGAGPVGLAALT-CAVGMFNPQNSIVVDVNDFRLDVAKDIGASHIINNKN--GDATEKILEITEGKGVDLVVEAIG----IPEGWYMCQDSVKSGGRIAMLGVHGVPATINLE---KMWYRNFTFTAGMMHGFT----IPSLMSAILEGKLNAEPLITHRLYLSDVQNAYTMFK 1004
            +  ++ +KV+ T +CGT++ +LG           LGHEG G +   G  V   + GD+V+   +  CGEC  C N     C            DG  R   T  G         +  T C Y           DA+     +        TG    +    +      A+ G G VGL+ +  C          I VDVN  +   A+++GA+  +N ++      E + ++T+  G+D   EAIG    +      C +S    G   ++GV  +PA++ L+   ++++   +    +  G+     IP L++  +  KLN +PLITH L L  +  A  + K
Sbjct:   33 KAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFCIQFKQSKTQLMSDGTSRF--TCKGK--SIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGLSVVMGCKAA--GAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDMTDA-GIDFCFEAIGNLDVLAAALASCNESY---GVCVVVGV--LPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAEKLNLDPLITHTLNLDKINEAVELMK 364
The following BLAST results are available for this feature:
BLAST of TCONS_00065813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADH62.427e-1925.00Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
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