TCONS_00065752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065752
Unique NameTCONS_00065752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065752 ID=TCONS_00065752|Name=TCONS_00065752|organism=Clytia hemisphaerica|type=transcript|length=1514bp
CTAAATCATATTTGATTTCATCGAAATTTTGAACAACACTGATTtcggaa
aattggaaaatttattgaaaaaaatataatattgaaatcttcttataaga
aaaatgaatccCCCTTTCTCAATAGATGAATAGGAGAAGATTATGTAATG
TTTTATTCAACTCCGTTTCGTCGATCGATAAAAAGCTTTGATAACAAAAA
ACGACTAAATCATTTAGCGTAAGACTTTGACCGAACGGTTCATCGGAGAG
AGAAACAAGTCAAATTGTGTGATTCTGATATAAAATATAGAGCCACGTGA
ATTGCAATAAGAATAACTTAAGAATACATTGACAATGGGTAAAGATCAAA
AATTAGTGAAAGAGCCTACAGTTCATCGACGCAAGTTGGTCATGGTAGGA
GATGGCGCTTGTGGTAAAACAAGTTTATTGTACGTTTTCACCAAAGATGA
GATGCCAACATCTTATGTTCCAACAATCTTTGACAATTATGTTGCTGACA
TGGAAGTTGAAAATGGCAAACAGGTTGAACTTGCATTATTCGACACTGCG
GGACAAGAAGAATATGACCAACTCCGTATACTCATGTACCCAGATGCCGA
CGTTATCGTTATCTGTTACAGCATTGACAGTCCGGACAGTTTCATGAACG
TCGTCGAAAAATGGGCTCCGGAAGTTAAACATTTCTGTCCGGGAGTACCA
ATTATTTTATGCGGAAATAAGAAAGACTTGAGAAATAACGAAGATGTTAA
GTTAAAGTTACAAGGACATAAACAAGTTCCCGTTCAAATTGAAGATGGTA
TTCAAGCCGCGCGGGCGATCGATGCGGTCTCTTTTGTTGAATGCTCGGCG
CTAACAAAAGCAGGAGTAATGGATTTATTTGAAACGGCTGCTCGTTCGGC
AATGGCTAAAAATTCtaagaagaaaaataagaaattcaaGAGTGCGAAAT
GTTGTTTGGTTTGATGGAGAATAGAGTTTCTATGAAAGAAATGATGGAGA
TATTTTGTTGTGAAAATCACATGAGAAAAGTTACACGAAAACAAAATGTC
ATTCGAAACCTTGTGTTCATGACAAACGTATTGACAGCTCATCTTGTAGT
CAATGTAAGATTCCATAATGGTAGCTTGACAGCGTGGTGTAatctttctt
aaaatattcaataATACTCATGAATGGGACAACGTGAGACGGTGTAGTGC
AATCCTGTCGCAACATCACAGcaagaaggaaagaaaaatgtgattcattt
tttatttacgAGTATTGCCTCACACATTATTCTCACACCGAAAACCCATA
TTCAAGATGGTGGATGGTGAAAATCCCTAACCAATTTTCCTTTGAGGGTT
AAACCACACACGTTCTAACGACGTGCAGATCCAtacaaaattgacgtcag
aaagACTGATAAAGCTTCGATGAAACATCCGACAACTGAATAGACTATTG
ATAACGAATTAATCAGTTCTATTTAtacgaaaattcaaaatttatgataa
TCAAAGTTACGTNN
Run BLAST on NCBI

protein sequence of TCONS_00065752-protein

>TCONS_00065752-protein ID=TCONS_00065752-protein|Name=TCONS_00065752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MGKDQKLVKEPTVHRRKLVMVGDGACGKTSLLYVFTKDEMPTSYVPTIFD
NYVADMEVENGKQVELALFDTAGQEEYDQLRILMYPDADVIVICYSIDSP
DSFMNVVEKWAPEVKHFCPGVPIILCGNKKDLRNNEDVKLKLQGHKQVPV
QIEDGIQAARAIDAVSFVECSALTKAGVMDLFETAARSAMAKNSKKKNKK
FKSAKCCLV
Run BLAST on NCBI

transcript from alignment at scaffold_444:25711..29711+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065752 ID=TCONS_00065752|Name=TCONS_00065752|organism=Clytia hemisphaerica|type=transcript|length=4001bp|location=Sequence derived from alignment at scaffold_444:25711..29711+ (Clytia hemisphaerica)
CTAAATCATATTTGATTTCATCGAAATTTTGAACAACACTGATTtcggaa aattggaaaatttattgaaaaaaatataatattgaaatcttcttataaga aaaatgaatccCCCTTTCTCAATAGATGAATAGGAGAAGATTATGTAATG TTTTATTCAACTCCGTTTCGTCGATCGATAAAAAGCTTTGATAACAAAAA ACGACTAAATCATTTAGCGTAAGACTTTGACCGAACGGTTCATCGGAGAG AGAAACAAGTCAAATTGTGTGATTCTGATATAAAATATAGAGCCACGTGA ATTGCAATAAGAATAACTTAAGAATACATTGACAATGGGTAAAGATCAAA AATTAGTGAAAGAGCCTACAGTTCATCGACGCAAGTTGGTCATGGTAGGA GATGGCGCTTGTGGTAAAACAAGTTTATTGTACGTTTTCACCAAAGATGA GATGCCAACATCTTATGTTCCAACAATCTTTGACAATTATGTTGCTGACA TGGAAGTTGAAAATGGCAAACAGGTAACTAGACTATGTTTTGTATTTATA TGTTTTTGGGTGGTTTGGTTTTAAAGAGCAACCACTTAAGTTGATTGAGC AAGAGTTTTATGTTTTGTCAAAAGTGCTGTGTTGACCTTTCGCAACATAC GTTTCAATACCAAAGTCCTCAAACTAAAAGAGACATGGTCGATAGAGAGT TTTCTAGTGAACTGATATTTTAGCAACCCACTGACCTCGAAacaaatttt aagaagaaattTCAAACAGAAAAAGTCAAACGTTGAGAAAATTACTTGAC AACAGAAATAAAtattagaaattttgaaatgtcatGACCTAGcagtttat atttttaaagttatgaaaacaaataaaaatcaGACAGTCATACAAAATTG AGAAAGAGGTTTATCAAGAAAATCTTTAACTGACAATTAAAAAATAGTAC TGTACCACATcactcgggtgaaacaaggcatgtcccaaatatattttgcg tgacgcgcaccgctttcaattattccttaacgttcatatatagctcaaaa gaatcatatcaaCGAGCGGATTTCAAAAAgcgctgggtcaaaaatttgca ttaagccaatctcaagatatcggtcaaaaattgattttgacgttataaaa tacatcgaaaaaacacgtcataagaNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNtgggtcaaaaatttgcactaagccaatctcaag atatcggtcaaaaattgattttgacgttataaaatacatcgaaaaaacac gtcataagtaaAATTCAattgacgtcattattgaaaaacagcgataactt taattttattaatgcaatcaacaccaaattttgactggagttgtaaatta atgattctgaaatatttgttcaaaaattttcagaaaatttgaatgacgtc atttgttgtcggaaaaaattaaaatacgttaaaaaatgctgacgtcatca cgaattttcaaattttttttcatgaattattttagaatcgttaatttaca tctccagtcaaaattttgctttgatagtagtaagttaatcggaattatcg ccttttttcaataatgacgtcatttaaattgtctttttgacgtgtttttt cgaagtattttataacgtcaaaatcagtttttggccgatatcttgagatt ggcttgatgtagacttttgacccagcacttttcgaaatcctctcgttgat acgattcttttgaactatatatgaaagttaatgaataatgggaagcggtg tgcgtcacgcaaaatatatttgggacatgccttgtttcacccgagcaAAA ACACAGACCTGAGAAAGAagtcgaaaaaattgaaattcctgaCATTCCGA TAAAAACTGTACAGAATAGAAATCTGACAAAGGTTGAAAAGCAATCAATC CTTTTGTCTGTATTCCTCTCTTATGAATACGATGTCGTTATTAGTTAATG ACAGTTAGAGACAACAACATTTTTCTTAGTAATAAAAACAGGAACCTAGT AGGCATTAAAACGGTAGCAAAACCCTAATACAAGAATTTCCGAATGGAAT CAAAACACCCCtagtttataaaaaacaacaatattCAACAAATAAACTGT GACTCATGTCAAGATTGCAttatcttttacaaaaaatcttgACATTTTAT ATTGAGACAATTTTGTTAAAAGATACAGTAGTGAACCAACGTTACTCTtc ggttccaaataaacgggggggttcgaataaacgggggggttggaaaattt tctagattttaataaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNagattaataaacgggggggtcctaataaggtcc gggggggttggaaaattttcgaaaaattaacaagcgggggggcccgttta tttggaacctaagagtaagtttTTTTGCGGTTTTATTTTTGTGGCGTTTT GAAGTATTTTAATTGATCTGTTTGTTACAAATTTCAAATATCTCTGGAAA AATTACTCAATCTAAAATtatgagaaatttcaaaaaaaagaccCAAATac atttttgtatgaaaaaaaattctatataTCTGATTCCAATTATTCTCTTT ATCTTTATAGGTTGAACTTGCATTATTCGACACTGCGGGACAAGAAGAAT ATGACCAACTCCGTATACTCATGTACCCAGATGCCGACGTTATCGTTATC TGTTACAGCATTGACAGTCCGGACAGTTTCATGAACGTCGTCGAAAAATG GGCTCCGGAAGTTAAACATTTCTGTCCGGGAGTACCAATTATTTTATGCG GAAATAAGAAAGACTTGAGAAATAACGAAGATGTTAAGTTAAAGTTACAA GGACATAAACAAGTTCCCGTTCAAATTGAAGATGGTATTCAAGCCGCGCG GGCGATCGATGCGGTCTCTTTTGTTGAATGCTCGGCGCTAACAAAAGCAG GAGTAATGGATTTATTTGAAACGGCTGCTCGTTCGGCAATGGCTAAAAAT TCtaagaagaaaaataagaaattcaaGAGTGCGAAATGTTGTTTGGTTTG ATGGAGAATAGAGTTTCTATGAAAGAAATGATGGAGATATTTTGTTGTGA AAATCACATGAGAAAAGTTACACGAAAACAAAATGTCATTCGAAACCTTG TGTTCATGACAAACGTATTGACAGCTCATCTTGTAGTCAATGTAAGATTC CATAATGGTAGCTTGACAGCGTGGTGTAatctttcttaaaatattcaata ATACTCATGAATGGGACAACGTGAGACGGTGTAGTGCAATCCTGTCGCAA CATCACAGcaagaaggaaagaaaaatgtgattcattttttatttacgAGT ATTGCCTCACACATTATTCTCACACCGAAAACCCATATTCAAGATGGTGG ATGGTGAAAATCCCTAACCAATTTTCCTTTGAGGGTTAAACCACACACGT TCTAACGACGTGCAGATCCAtacaaaattgacgtcagaaagACTGATAAA GCTTCGATGAAACATCCGACAACTGAATAGACTATTGATAACGAATTAAT CAGTTCTATTTAtacgaaaattcaaaatttatgataaTCAAAGTTACGTN N

Coding sequence (CDS) from alignment at scaffold_444:25711..29711+

>TCONS_00065752 ID=TCONS_00065752|Name=TCONS_00065752|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_444:25711..29711+ (Clytia hemisphaerica)
ATGGGTAAAGATCAAAAATTAGTGAAAGAGCCTACAGTTCATCGACGCAA
GTTGGTCATGGTAGGAGATGGCGCTTGTGGTAAAACAAGTTTATTGTACG
TTTTCACCAAAGATGAGATGCCAACATCTTATGTTCCAACAATCTTTGAC
AATTATGTTGCTGACATGGAAGTTGAAAATGGCAAACAGGTTGAACTTGC
ATTATTCGACACTGCGGGACAAGAAGAATATGACCAACTCCGTATACTCA
TGTACCCAGATGCCGACGTTATCGTTATCTGTTACAGCATTGACAGTCCG
GACAGTTTCATGAACGTCGTCGAAAAATGGGCTCCGGAAGTTAAACATTT
CTGTCCGGGAGTACCAATTATTTTATGCGGAAATAAGAAAGACTTGAGAA
ATAACGAAGATGTTAAGTTAAAGTTACAAGGACATAAACAAGTTCCCGTT
CAAATTGAAGATGGTATTCAAGCCGCGCGGGCGATCGATGCGGTCTCTTT
TGTTGAATGCTCGGCGCTAACAAAAGCAGGAGTAATGGATTTATTTGAAA
CGGCTGCTCGTTCGGCAATGGCTAAAAATTCtaagaagaaaaataagaaa
ttcaaGAGTGCGAAATGTTGTTTGGTTTGAATGGGTAAAGATCAAAAATT
AGTGAAAGAGCCTACAGTTCATCGACGCAAGTTGGTCATGGTAGGAGATG
GCGCTTGTGGTAAAACAAGTTTATTGTACGTTTTCACCAAAGATGAGATG
CCAACATCTTATGTTCCAACAATCTTTGACAATTATGTTGCTGACATGGA
AGTTGAAAATGGCAAACAGGTTGAACTTGCATTATTCGACACTGCGGGAC
AAGAAGAATATGACCAACTCCGTATACTCATGTACCCAGATGCCGACGTT
ATCGTTATCTGTTACAGCATTGACAGTCCGGACAGTTTCATGAACGTCGT
CGAAAAATGGGCTCCGGAAGTTAAACATTTCTGTCCGGGAGTACCAATTA
TTTTATGCGGAAATAAGAAAGACTTGAGAAATAACGAAGATGTTAAGTTA
AAGTTACAAGGACATAAACAAGTTCCCGTTCAAATTGAAGATGGTATTCA
AGCCGCGCGGGCGATCGATGCGGTCTCTTTTGTTGAATGCTCGGCGCTAA
CAAAAGCAGGAGTAATGGATTTATTTGAAACGGCTGCTCGTTCGGCAATG
GCTAAAAATTCtaagaagaaaaataagaaattcaaGAGTGCGAAATGTTG
TTTGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041191XLOC_041191Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065752-proteinTCONS_00065752-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065752-exon-scaffold_444-1491911889:25711..26233TCONS_00065752-exon-scaffold_444-1491911889:25711..26233Clytia hemisphaericaexon
TCONS_00065752-exon-scaffold_444-1510915933:25711..26233TCONS_00065752-exon-scaffold_444-1510915933:25711..26233Clytia hemisphaericaexon
TCONS_00065752-exon-scaffold_444-1575043694:25711..26233TCONS_00065752-exon-scaffold_444-1575043694:25711..26233Clytia hemisphaericaexon
TCONS_00065752-exon-scaffold_444-1491911889:28721..29711TCONS_00065752-exon-scaffold_444-1491911889:28721..29711Clytia hemisphaericaexon
TCONS_00065752-exon-scaffold_444-1510915933:28721..29711TCONS_00065752-exon-scaffold_444-1510915933:28721..29711Clytia hemisphaericaexon
TCONS_00065752-exon-scaffold_444-1575043694:28721..29711TCONS_00065752-exon-scaffold_444-1575043694:28721..29711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:25711..29711 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.271545 1.18454 0.442291 0.778818 85.053 68.041 52.9926 57.517 63.4062 216.054 84.1793 106.079 66.5443 59.4402 72.5922 52.5396 45.1051 49.5549 73.566 64.4878 55.9304 60.2288 26.0695 32.7565 51.7033 41.177 66.2691 58.4445 129.358 105.336
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
BLAST of TCONS_00065752 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.223e-72
Identity = 111/169 (65.68%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  377 RRKLVMVGDGACGKTSLLYVFTKDEMPTSYVPTIFDNYVADMEVENGKQVELALFDTAGQEEYDQLRILMYPDADVIVICYSIDSPDSFMNVVEKWAPEVKHFCPGVPIILCGNKKDLRNNEDVKLKLQGHKQVPVQIEDGIQAARAIDAVSFVECSALTKAGVMDLFE 883
            R+KLV+VGDGACGKT LL VF+KD+ P  YVPT+F+NYVAD+EV +GKQVELAL+DTAGQE+YD+LR L YPD DVI++C+SIDSPDS  N+ EKW PEVKHFCP VPIIL GNKKDLRN+E  + +L   KQ PV+ E+G   A  I A  ++ECSA TK GV ++FE
Sbjct:    5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172          
The following BLAST results are available for this feature:
BLAST of TCONS_00065752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA3.223e-7265.68Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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