TCONS_00065752-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065752-protein
Unique NameTCONS_00065752-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length209

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065752-protein ID=TCONS_00065752-protein|Name=TCONS_00065752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MGKDQKLVKEPTVHRRKLVMVGDGACGKTSLLYVFTKDEMPTSYVPTIFD
NYVADMEVENGKQVELALFDTAGQEEYDQLRILMYPDADVIVICYSIDSP
DSFMNVVEKWAPEVKHFCPGVPIILCGNKKDLRNNEDVKLKLQGHKQVPV
QIEDGIQAARAIDAVSFVECSALTKAGVMDLFETAARSAMAKNSKKKNKK
FKSAKCCLV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041191XLOC_041191Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065752TCONS_00065752Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 119..132
score: 52.87
coord: 39..55
score: 28.13
coord: 57..79
score: 41.11
coord: 16..37
score: 45.0
coord: 167..189
score: 34.58
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 21..206
e-value: 7.9E-4
score: 6.0
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 17..192
e-value: 6.4E-17
score: 72.2
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 18..192
e-value: 4.6E-96
score: 335.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 13..192
e-value: 1.8E-14
score: 64.1
NoneNo IPR availableGENE3D3.40.50.300coord: 88..193
e-value: 1.6E-28
score: 98.3
NoneNo IPR availableGENE3D3.30.70.1390coord: 14..85
e-value: 7.1E-19
score: 67.1
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 17..189
e-value: 5.5E-50
score: 169.0
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 15..163
e-value: 5.6E-37
score: 125.0
IPR003578Small GTPase superfamily, Rho typePROSITEPS51420RHOcoord: 9..189
score: 23.966
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 15..189

Blast
[Close]
BLAST of TCONS_00065752-protein vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 5.712e-82
Identity = 118/185 (63.78%), Postives = 146/185 (78.92%), Query Frame = 0 
Query:   15 RRKLVMVGDGACGKTSLLYVFTKDEMPTSYVPTIFDNYVADMEVENGKQVELALFDTAGQEEYDQLRILMYPDADVIVICYSIDSPDSFMNVVEKWAPEVKHFCPGVPIILCGNKKDLRNNEDVKLKLQGHKQVPVQIEDGIQAARAIDAVSFVECSALTKAGVMDLFETAARSAM-AKNSKKKN 198
            R+KLV+VGDGACGKT LL VF+KD+ P  YVPT+F+NYVAD+EV +GKQVELAL+DTAGQE+YD+LR L YPD DVI++C+SIDSPDS  N+ EKW PEVKHFCP VPIIL GNKKDLRN+E  + +L   KQ PV+ E+G   A  I A  ++ECSA TK GV ++FE A R+A+ A+  KKK+
Sbjct:    5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKS 188
The following BLAST results are available for this feature:
BLAST of TCONS_00065752-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA5.712e-8263.78Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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